data_2I29 # _model_server_result.job_id HFSwwFpzjrdp7lQpCgHaBQ _model_server_result.datetime_utc '2024-11-13 18:36:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":273}' # _entry.id 2I29 # _exptl.entry_id 2I29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I29 _cell.length_a 62.503 _cell.length_b 73.538 _cell.length_c 118.745 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.503 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.503 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 257 n n PA O2A NAD sing 258 n n PA O5B NAD sing 259 n n PA O3 NAD sing 260 n n O2A HOA2 NAD sing 261 n n O5B C5B NAD sing 262 n n C5B C4B NAD sing 263 n n C5B H51A NAD sing 264 n n C5B H52A NAD sing 265 n n C4B O4B NAD sing 266 n n C4B C3B NAD sing 267 n n C4B H4B NAD sing 268 n n O4B C1B NAD sing 269 n n C3B O3B NAD sing 270 n n C3B C2B NAD sing 271 n n C3B H3B NAD sing 272 n n O3B HO3A NAD sing 273 n n C2B O2B NAD sing 274 n n C2B C1B NAD sing 275 n n C2B H2B NAD sing 276 n n O2B HO2A NAD sing 277 n n C1B N9A NAD sing 278 n n C1B H1B NAD sing 279 n n N9A C8A NAD sing 280 n y N9A C4A NAD sing 281 n y C8A N7A NAD doub 282 n y C8A H8A NAD sing 283 n n N7A C5A NAD sing 284 n y C5A C6A NAD sing 285 n y C5A C4A NAD doub 286 n y C6A N6A NAD sing 287 n n C6A N1A NAD doub 288 n y N6A H61A NAD sing 289 n n N6A H62A NAD sing 290 n n N1A C2A NAD sing 291 n y C2A N3A NAD doub 292 n y C2A H2A NAD sing 293 n n N3A C4A NAD sing 294 n y O3 PN NAD sing 295 n n PN O1N NAD doub 296 n n PN O2N NAD sing 297 n n PN O5D NAD sing 298 n n O5D C5D NAD sing 299 n n C5D C4D NAD sing 300 n n C5D H51N NAD sing 301 n n C5D H52N NAD sing 302 n n C4D O4D NAD sing 303 n n C4D C3D NAD sing 304 n n C4D H4D NAD sing 305 n n O4D C1D NAD sing 306 n n C3D O3D NAD sing 307 n n C3D C2D NAD sing 308 n n C3D H3D NAD sing 309 n n O3D HO3N NAD sing 310 n n C2D O2D NAD sing 311 n n C2D C1D NAD sing 312 n n C2D H2D NAD sing 313 n n O2D HO2N NAD sing 314 n n C1D N1N NAD sing 315 n n C1D H1D NAD sing 316 n n N1N C2N NAD sing 317 n y N1N C6N NAD doub 318 n y C2N C3N NAD doub 319 n y C2N H2N NAD sing 320 n n C3N C7N NAD sing 321 n n C3N C4N NAD sing 322 n y C7N O7N NAD doub 323 n n C7N N7N NAD sing 324 n n N7N H71N NAD sing 325 n n N7N H72N NAD sing 326 n n C4N C5N NAD doub 327 n y C4N H4N NAD sing 328 n n C5N C6N NAD sing 329 n y C5N H5N NAD sing 330 n n C6N H6N NAD sing 331 n n # _atom_sites.entry_id 2I29 _atom_sites.fract_transf_matrix[1][1] 0.015999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 273 101 NAD NAD . C 3 CIT A 1 274 201 CIT CIT . D 4 HOH A 1 275 1 HOH HOH . D 4 HOH A 2 276 2 HOH HOH . D 4 HOH A 3 277 3 HOH HOH . D 4 HOH A 4 278 4 HOH HOH . D 4 HOH A 5 279 5 HOH HOH . D 4 HOH A 6 280 6 HOH HOH . D 4 HOH A 7 281 7 HOH HOH . D 4 HOH A 8 282 8 HOH HOH . D 4 HOH A 9 283 9 HOH HOH . D 4 HOH A 10 284 10 HOH HOH . D 4 HOH A 11 285 11 HOH HOH . D 4 HOH A 12 286 12 HOH HOH . D 4 HOH A 13 287 13 HOH HOH . D 4 HOH A 14 288 14 HOH HOH . D 4 HOH A 15 289 15 HOH HOH . D 4 HOH A 16 290 16 HOH HOH . D 4 HOH A 17 291 17 HOH HOH . D 4 HOH A 18 292 18 HOH HOH . D 4 HOH A 19 293 19 HOH HOH . D 4 HOH A 20 294 20 HOH HOH . D 4 HOH A 21 295 21 HOH HOH . D 4 HOH A 22 296 22 HOH HOH . D 4 HOH A 23 297 23 HOH HOH . D 4 HOH A 24 298 24 HOH HOH . D 4 HOH A 25 299 25 HOH HOH . D 4 HOH A 26 300 26 HOH HOH . D 4 HOH A 27 301 27 HOH HOH . D 4 HOH A 28 302 28 HOH HOH . D 4 HOH A 29 303 29 HOH HOH . D 4 HOH A 30 304 30 HOH HOH . D 4 HOH A 31 305 31 HOH HOH . D 4 HOH A 32 306 32 HOH HOH . D 4 HOH A 33 307 33 HOH HOH . D 4 HOH A 34 308 34 HOH HOH . D 4 HOH A 35 309 35 HOH HOH . D 4 HOH A 36 310 36 HOH HOH . D 4 HOH A 37 311 37 HOH HOH . D 4 HOH A 38 312 38 HOH HOH . D 4 HOH A 39 313 39 HOH HOH . D 4 HOH A 40 314 40 HOH HOH . D 4 HOH A 41 315 41 HOH HOH . D 4 HOH A 42 316 42 HOH HOH . D 4 HOH A 43 317 43 HOH HOH . D 4 HOH A 44 318 44 HOH HOH . D 4 HOH A 45 319 45 HOH HOH . D 4 HOH A 46 320 46 HOH HOH . D 4 HOH A 47 321 47 HOH HOH . D 4 HOH A 48 322 48 HOH HOH . D 4 HOH A 49 323 49 HOH HOH . D 4 HOH A 50 324 50 HOH HOH . D 4 HOH A 51 325 51 HOH HOH . D 4 HOH A 52 326 52 HOH HOH . D 4 HOH A 53 327 53 HOH HOH . D 4 HOH A 54 328 54 HOH HOH . D 4 HOH A 55 329 55 HOH HOH . D 4 HOH A 56 330 56 HOH HOH . D 4 HOH A 57 331 57 HOH HOH . D 4 HOH A 58 332 58 HOH HOH . D 4 HOH A 59 333 59 HOH HOH . D 4 HOH A 60 334 60 HOH HOH . D 4 HOH A 61 335 61 HOH HOH . D 4 HOH A 62 336 62 HOH HOH . D 4 HOH A 63 337 63 HOH HOH . D 4 HOH A 64 338 64 HOH HOH . D 4 HOH A 65 339 65 HOH HOH . D 4 HOH A 66 340 66 HOH HOH . D 4 HOH A 67 341 67 HOH HOH . D 4 HOH A 68 342 68 HOH HOH . D 4 HOH A 69 343 69 HOH HOH . D 4 HOH A 70 344 70 HOH HOH . D 4 HOH A 71 345 71 HOH HOH . D 4 HOH A 72 346 72 HOH HOH . D 4 HOH A 73 347 73 HOH HOH . D 4 HOH A 74 348 74 HOH HOH . D 4 HOH A 75 349 75 HOH HOH . D 4 HOH A 76 350 76 HOH HOH . D 4 HOH A 77 351 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 13.626 6.647 12.471 0.6 41.09 ? PA NAD 273 A 1 HETATM 2 O O1A NAD . . . B 2 13.674 5.55 13.46 0.6 41.35 ? O1A NAD 273 A 1 HETATM 3 O O2A NAD . . . B 2 13.396 6.079 11.12 0.6 40.85 ? O2A NAD 273 A 1 HETATM 4 O O5B NAD . . . B 2 15.02 7.474 12.536 1 41.58 ? O5B NAD 273 A 1 HETATM 5 C C5B NAD . . . B 2 15.517 7.91 13.781 1 40.12 ? C5B NAD 273 A 1 HETATM 6 C C4B NAD . . . B 2 16.964 7.488 14.007 1 39.1 ? C4B NAD 273 A 1 HETATM 7 O O4B NAD . . . B 2 17.83 8.205 13.146 1 38.83 ? O4B NAD 273 A 1 HETATM 8 C C3B NAD . . . B 2 17.356 7.864 15.426 1 38.9 ? C3B NAD 273 A 1 HETATM 9 O O3B NAD . . . B 2 18.315 6.959 15.927 1 39.57 ? O3B NAD 273 A 1 HETATM 10 C C2B NAD . . . B 2 17.964 9.242 15.254 1 38.39 ? C2B NAD 273 A 1 HETATM 11 O O2B NAD . . . B 2 18.82 9.59 16.331 1 37.41 ? O2B NAD 273 A 1 HETATM 12 C C1B NAD . . . B 2 18.649 9.09 13.895 1 37.28 ? C1B NAD 273 A 1 HETATM 13 N N9A NAD . . . B 2 18.863 10.391 13.231 1 36.79 ? N9A NAD 273 A 1 HETATM 14 C C8A NAD . . . B 2 17.936 11.316 12.816 1 35.81 ? C8A NAD 273 A 1 HETATM 15 N N7A NAD . . . B 2 18.598 12.367 12.28 1 36.43 ? N7A NAD 273 A 1 HETATM 16 C C5A NAD . . . B 2 19.933 12.132 12.333 1 37.18 ? C5A NAD 273 A 1 HETATM 17 C C6A NAD . . . B 2 21.07 12.849 11.943 1 36.79 ? C6A NAD 273 A 1 HETATM 18 N N6A NAD . . . B 2 20.989 13.93 11.188 1 37.11 ? N6A NAD 273 A 1 HETATM 19 N N1A NAD . . . B 2 22.32 12.302 12.148 1 36.73 ? N1A NAD 273 A 1 HETATM 20 C C2A NAD . . . B 2 22.459 11.068 12.75 1 36.27 ? C2A NAD 273 A 1 HETATM 21 N N3A NAD . . . B 2 21.341 10.367 13.137 1 34.98 ? N3A NAD 273 A 1 HETATM 22 C C4A NAD . . . B 2 20.105 10.882 12.929 1 36.39 ? C4A NAD 273 A 1 HETATM 23 O O3 NAD . . . B 2 12.464 7.696 12.903 0.6 41.57 ? O3 NAD 273 A 1 HETATM 24 P PN NAD . . . B 2 12.462 9.263 12.494 0.6 41.73 ? PN NAD 273 A 1 HETATM 25 O O1N NAD . . . B 2 13.467 9.974 13.318 0.6 42.37 ? O1N NAD 273 A 1 HETATM 26 O O2N NAD . . . B 2 11.075 9.775 12.453 0.6 40.92 ? O2N NAD 273 A 1 HETATM 27 O O5D NAD . . . B 2 12.993 9.193 10.979 1 41.47 ? O5D NAD 273 A 1 HETATM 28 C C5D NAD . . . B 2 13.596 10.299 10.367 1 38.79 ? C5D NAD 273 A 1 HETATM 29 C C4D NAD . . . B 2 14.987 9.929 9.868 1 38.13 ? C4D NAD 273 A 1 HETATM 30 O O4D NAD . . . B 2 15.282 8.541 9.853 1 37.96 ? O4D NAD 273 A 1 HETATM 31 C C3D NAD . . . B 2 15.164 10.355 8.43 1 37.76 ? C3D NAD 273 A 1 HETATM 32 O O3D NAD . . . B 2 15.447 11.73 8.367 1 36.74 ? O3D NAD 273 A 1 HETATM 33 C C2D NAD . . . B 2 16.31 9.473 7.943 1 37.75 ? C2D NAD 273 A 1 HETATM 34 O O2D NAD . . . B 2 17.517 10.193 7.996 1 38.88 ? O2D NAD 273 A 1 HETATM 35 C C1D NAD . . . B 2 16.345 8.308 8.92 1 37.78 ? C1D NAD 273 A 1 HETATM 36 N N1N NAD . . . B 2 16.26 6.988 8.225 1 37.36 ? N1N NAD 273 A 1 HETATM 37 C C2N NAD . . . B 2 17.389 6.238 8.155 1 36.39 ? C2N NAD 273 A 1 HETATM 38 C C3N NAD . . . B 2 17.387 4.987 7.534 1 37.66 ? C3N NAD 273 A 1 HETATM 39 C C7N NAD . . . B 2 18.731 4.344 7.37 1 36.96 ? C7N NAD 273 A 1 HETATM 40 O O7N NAD . . . B 2 19.817 5.124 7.789 1 34.45 ? O7N NAD 273 A 1 HETATM 41 N N7N NAD . . . B 2 18.859 3.121 6.869 1 34.03 ? N7N NAD 273 A 1 HETATM 42 C C4N NAD . . . B 2 16.225 4.469 6.966 1 36.54 ? C4N NAD 273 A 1 HETATM 43 C C5N NAD . . . B 2 15.067 5.241 7.04 1 38.15 ? C5N NAD 273 A 1 HETATM 44 C C6N NAD . . . B 2 15.098 6.496 7.666 1 37.99 ? C6N NAD 273 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 44 #