data_2I2A # _model_server_result.job_id uwNa8RB7HhGFVvnj06mlEQ _model_server_result.datetime_utc '2024-12-02 10:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":273}' # _entry.id 2I2A # _exptl.entry_id 2I2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I2A _cell.length_a 61.902 _cell.length_b 77.429 _cell.length_c 117.797 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 61.902 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 61.902 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 250 n n PA O2A NAP sing 251 n n PA O5B NAP sing 252 n n PA O3 NAP sing 253 n n O2A HOA2 NAP sing 254 n n O5B C5B NAP sing 255 n n C5B C4B NAP sing 256 n n C5B H51A NAP sing 257 n n C5B H52A NAP sing 258 n n C4B O4B NAP sing 259 n n C4B C3B NAP sing 260 n n C4B H4B NAP sing 261 n n O4B C1B NAP sing 262 n n C3B O3B NAP sing 263 n n C3B C2B NAP sing 264 n n C3B H3B NAP sing 265 n n O3B HO3A NAP sing 266 n n C2B O2B NAP sing 267 n n C2B C1B NAP sing 268 n n C2B H2B NAP sing 269 n n O2B P2B NAP sing 270 n n C1B N9A NAP sing 271 n n C1B H1B NAP sing 272 n n N9A C8A NAP sing 273 n y N9A C4A NAP sing 274 n y C8A N7A NAP doub 275 n y C8A H8A NAP sing 276 n n N7A C5A NAP sing 277 n y C5A C6A NAP sing 278 n y C5A C4A NAP doub 279 n y C6A N6A NAP sing 280 n n C6A N1A NAP doub 281 n y N6A H61A NAP sing 282 n n N6A H62A NAP sing 283 n n N1A C2A NAP sing 284 n y C2A N3A NAP doub 285 n y C2A H2A NAP sing 286 n n N3A C4A NAP sing 287 n y O3 PN NAP sing 288 n n PN O1N NAP doub 289 n n PN O2N NAP sing 290 n n PN O5D NAP sing 291 n n O5D C5D NAP sing 292 n n C5D C4D NAP sing 293 n n C5D H51N NAP sing 294 n n C5D H52N NAP sing 295 n n C4D O4D NAP sing 296 n n C4D C3D NAP sing 297 n n C4D H4D NAP sing 298 n n O4D C1D NAP sing 299 n n C3D O3D NAP sing 300 n n C3D C2D NAP sing 301 n n C3D H3D NAP sing 302 n n O3D HO3N NAP sing 303 n n C2D O2D NAP sing 304 n n C2D C1D NAP sing 305 n n C2D H2D NAP sing 306 n n O2D HO2N NAP sing 307 n n C1D N1N NAP sing 308 n n C1D H1D NAP sing 309 n n N1N C2N NAP sing 310 n y N1N C6N NAP doub 311 n y C2N C3N NAP doub 312 n y C2N H2N NAP sing 313 n n C3N C7N NAP sing 314 n n C3N C4N NAP sing 315 n y C7N O7N NAP doub 316 n n C7N N7N NAP sing 317 n n N7N H71N NAP sing 318 n n N7N H72N NAP sing 319 n n C4N C5N NAP doub 320 n y C4N H4N NAP sing 321 n n C5N C6N NAP sing 322 n y C5N H5N NAP sing 323 n n C6N H6N NAP sing 324 n n P2B O1X NAP doub 325 n n P2B O2X NAP sing 326 n n P2B O3X NAP sing 327 n n O2X HOP2 NAP sing 328 n n O3X HOP3 NAP sing 329 n n # _atom_sites.entry_id 2I2A _atom_sites.fract_transf_matrix[1][1] 0.016155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 273 201 NAP NAP . C 3 GOL A 1 301 301 GOL GOL . D 4 HOH A 1 302 1 HOH HOH . D 4 HOH A 2 303 2 HOH HOH . D 4 HOH A 3 304 3 HOH HOH . D 4 HOH A 4 305 4 HOH HOH . D 4 HOH A 5 306 5 HOH HOH . D 4 HOH A 6 307 6 HOH HOH . D 4 HOH A 7 308 7 HOH HOH . D 4 HOH A 8 309 8 HOH HOH . D 4 HOH A 9 310 9 HOH HOH . D 4 HOH A 10 311 10 HOH HOH . D 4 HOH A 11 312 11 HOH HOH . D 4 HOH A 12 313 12 HOH HOH . D 4 HOH A 13 314 13 HOH HOH . D 4 HOH A 14 315 14 HOH HOH . D 4 HOH A 15 316 16 HOH HOH . D 4 HOH A 16 317 17 HOH HOH . D 4 HOH A 17 318 18 HOH HOH . D 4 HOH A 18 319 19 HOH HOH . D 4 HOH A 19 320 20 HOH HOH . D 4 HOH A 20 321 21 HOH HOH . D 4 HOH A 21 322 22 HOH HOH . D 4 HOH A 22 323 23 HOH HOH . D 4 HOH A 23 324 24 HOH HOH . D 4 HOH A 24 325 25 HOH HOH . D 4 HOH A 25 326 26 HOH HOH . D 4 HOH A 26 327 27 HOH HOH . D 4 HOH A 27 328 28 HOH HOH . D 4 HOH A 28 329 29 HOH HOH . D 4 HOH A 29 330 30 HOH HOH . D 4 HOH A 30 331 31 HOH HOH . D 4 HOH A 31 332 32 HOH HOH . D 4 HOH A 32 333 33 HOH HOH . D 4 HOH A 33 334 34 HOH HOH . D 4 HOH A 34 335 35 HOH HOH . D 4 HOH A 35 336 36 HOH HOH . D 4 HOH A 36 337 37 HOH HOH . D 4 HOH A 37 338 38 HOH HOH . D 4 HOH A 38 339 39 HOH HOH . D 4 HOH A 39 340 40 HOH HOH . D 4 HOH A 40 341 41 HOH HOH . D 4 HOH A 41 342 42 HOH HOH . D 4 HOH A 42 343 43 HOH HOH . D 4 HOH A 43 344 44 HOH HOH . D 4 HOH A 44 345 45 HOH HOH . D 4 HOH A 45 346 46 HOH HOH . D 4 HOH A 46 347 47 HOH HOH . D 4 HOH A 47 348 48 HOH HOH . D 4 HOH A 48 349 49 HOH HOH . D 4 HOH A 49 350 50 HOH HOH . D 4 HOH A 50 351 51 HOH HOH . D 4 HOH A 51 352 52 HOH HOH . D 4 HOH A 52 353 53 HOH HOH . D 4 HOH A 53 354 54 HOH HOH . D 4 HOH A 54 355 55 HOH HOH . D 4 HOH A 55 356 56 HOH HOH . D 4 HOH A 56 357 57 HOH HOH . D 4 HOH A 57 358 58 HOH HOH . D 4 HOH A 58 359 59 HOH HOH . D 4 HOH A 59 360 60 HOH HOH . D 4 HOH A 60 361 61 HOH HOH . D 4 HOH A 61 362 62 HOH HOH . D 4 HOH A 62 363 63 HOH HOH . D 4 HOH A 63 364 64 HOH HOH . D 4 HOH A 64 365 65 HOH HOH . D 4 HOH A 65 366 66 HOH HOH . D 4 HOH A 66 367 67 HOH HOH . D 4 HOH A 67 368 68 HOH HOH . D 4 HOH A 68 369 69 HOH HOH . D 4 HOH A 69 370 70 HOH HOH . D 4 HOH A 70 371 71 HOH HOH . D 4 HOH A 71 372 72 HOH HOH . D 4 HOH A 72 373 73 HOH HOH . D 4 HOH A 73 374 74 HOH HOH . D 4 HOH A 74 375 75 HOH HOH . D 4 HOH A 75 376 76 HOH HOH . D 4 HOH A 76 377 77 HOH HOH . D 4 HOH A 77 378 78 HOH HOH . D 4 HOH A 78 379 79 HOH HOH . D 4 HOH A 79 380 80 HOH HOH . D 4 HOH A 80 381 81 HOH HOH . D 4 HOH A 81 382 82 HOH HOH . D 4 HOH A 82 383 83 HOH HOH . D 4 HOH A 83 384 84 HOH HOH . D 4 HOH A 84 385 85 HOH HOH . D 4 HOH A 85 386 86 HOH HOH . D 4 HOH A 86 387 87 HOH HOH . D 4 HOH A 87 388 88 HOH HOH . D 4 HOH A 88 389 89 HOH HOH . D 4 HOH A 89 390 90 HOH HOH . D 4 HOH A 90 391 91 HOH HOH . D 4 HOH A 91 392 92 HOH HOH . D 4 HOH A 92 393 93 HOH HOH . D 4 HOH A 93 394 94 HOH HOH . D 4 HOH A 94 395 95 HOH HOH . D 4 HOH A 95 396 96 HOH HOH . D 4 HOH A 96 397 97 HOH HOH . D 4 HOH A 97 398 98 HOH HOH . D 4 HOH A 98 399 99 HOH HOH . D 4 HOH A 99 400 100 HOH HOH . D 4 HOH A 100 401 101 HOH HOH . D 4 HOH A 101 402 102 HOH HOH . D 4 HOH A 102 403 103 HOH HOH . D 4 HOH A 103 404 104 HOH HOH . D 4 HOH A 104 405 105 HOH HOH . D 4 HOH A 105 406 106 HOH HOH . D 4 HOH A 106 407 107 HOH HOH . D 4 HOH A 107 408 108 HOH HOH . D 4 HOH A 108 409 109 HOH HOH . D 4 HOH A 109 410 110 HOH HOH . D 4 HOH A 110 411 111 HOH HOH . D 4 HOH A 111 412 112 HOH HOH . D 4 HOH A 112 413 113 HOH HOH . D 4 HOH A 113 414 114 HOH HOH . D 4 HOH A 114 415 115 HOH HOH . D 4 HOH A 115 416 116 HOH HOH . D 4 HOH A 116 417 117 HOH HOH . D 4 HOH A 117 418 118 HOH HOH . D 4 HOH A 118 419 119 HOH HOH . D 4 HOH A 119 420 120 HOH HOH . D 4 HOH A 120 421 121 HOH HOH . D 4 HOH A 121 422 122 HOH HOH . D 4 HOH A 122 423 123 HOH HOH . D 4 HOH A 123 424 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 12.98 6.756 12.248 0.8 27.59 ? PA NAP 273 A 1 HETATM 2 O O1A NAP . . . B 2 12.645 5.776 13.3 0.8 28.7 ? O1A NAP 273 A 1 HETATM 3 O O2A NAP . . . B 2 13.173 6.084 10.935 0.8 27.3 ? O2A NAP 273 A 1 HETATM 4 O O5B NAP . . . B 2 14.256 7.633 12.725 0.8 26.86 ? O5B NAP 273 A 1 HETATM 5 C C5B NAP . . . B 2 15.569 7.185 12.458 1 24.57 ? C5B NAP 273 A 1 HETATM 6 C C4B NAP . . . B 2 16.594 7.752 13.434 1 22.55 ? C4B NAP 273 A 1 HETATM 7 O O4B NAP . . . B 2 17.269 8.832 12.828 1 22.33 ? O4B NAP 273 A 1 HETATM 8 C C3B NAP . . . B 2 16.022 8.305 14.729 1 22.5 ? C3B NAP 273 A 1 HETATM 9 O O3B NAP . . . B 2 16.477 7.492 15.785 1 23.12 ? O3B NAP 273 A 1 HETATM 10 C C2B NAP . . . B 2 16.585 9.727 14.836 1 21.63 ? C2B NAP 273 A 1 HETATM 11 O O2B NAP . . . B 2 17.035 10.049 16.141 1 20.61 ? O2B NAP 273 A 1 HETATM 12 C C1B NAP . . . B 2 17.725 9.704 13.826 1 20.36 ? C1B NAP 273 A 1 HETATM 13 N N9A NAP . . . B 2 18.07 10.997 13.191 1 20.14 ? N9A NAP 273 A 1 HETATM 14 C C8A NAP . . . B 2 17.247 12.031 12.835 1 19.25 ? C8A NAP 273 A 1 HETATM 15 N N7A NAP . . . B 2 17.997 13.005 12.281 1 19.69 ? N7A NAP 273 A 1 HETATM 16 C C5A NAP . . . B 2 19.295 12.614 12.27 1 20.18 ? C5A NAP 273 A 1 HETATM 17 C C6A NAP . . . B 2 20.482 13.212 11.823 1 19.55 ? C6A NAP 273 A 1 HETATM 18 N N6A NAP . . . B 2 20.484 14.389 11.195 1 20.29 ? N6A NAP 273 A 1 HETATM 19 N N1A NAP . . . B 2 21.677 12.536 11.972 1 19.82 ? N1A NAP 273 A 1 HETATM 20 C C2A NAP . . . B 2 21.697 11.269 12.538 1 20.23 ? C2A NAP 273 A 1 HETATM 21 N N3A NAP . . . B 2 20.527 10.68 12.968 1 18.83 ? N3A NAP 273 A 1 HETATM 22 C C4A NAP . . . B 2 19.345 11.343 12.837 1 19.93 ? C4A NAP 273 A 1 HETATM 23 O O3 NAP . . . B 2 11.804 7.855 12.143 0.8 28.11 ? O3 NAP 273 A 1 HETATM 24 P PN NAP . . . B 2 11.392 8.569 10.748 0.8 27.92 ? PN NAP 273 A 1 HETATM 25 O O1N NAP . . . B 2 10.723 9.844 11.111 0.8 28.16 ? O1N NAP 273 A 1 HETATM 26 O O2N NAP . . . B 2 10.745 7.572 9.861 0.8 27.81 ? O2N NAP 273 A 1 HETATM 27 O O5D NAP . . . B 2 12.764 8.94 10.037 1 26.01 ? O5D NAP 273 A 1 HETATM 28 C C5D NAP . . . B 2 13.292 10.224 10.158 1 23.94 ? C5D NAP 273 A 1 HETATM 29 C C4D NAP . . . B 2 14.724 10.098 9.69 1 22.94 ? C4D NAP 273 A 1 HETATM 30 O O4D NAP . . . B 2 15.164 8.754 9.758 1 22.71 ? O4D NAP 273 A 1 HETATM 31 C C3D NAP . . . B 2 14.845 10.486 8.235 1 21.2 ? C3D NAP 273 A 1 HETATM 32 O O3D NAP . . . B 2 14.912 11.904 8.147 1 20.2 ? O3D NAP 273 A 1 HETATM 33 C C2D NAP . . . B 2 16.062 9.674 7.783 1 20.36 ? C2D NAP 273 A 1 HETATM 34 O O2D NAP . . . B 2 17.256 10.419 7.848 1 18.73 ? O2D NAP 273 A 1 HETATM 35 C C1D NAP . . . B 2 16.153 8.513 8.765 1 20.06 ? C1D NAP 273 A 1 HETATM 36 N N1N NAP . . . B 2 15.967 7.189 8.103 1 19.48 ? N1N NAP 273 A 1 HETATM 37 C C2N NAP . . . B 2 17.069 6.392 8.025 1 17.26 ? C2N NAP 273 A 1 HETATM 38 C C3N NAP . . . B 2 17.021 5.151 7.421 1 18.55 ? C3N NAP 273 A 1 HETATM 39 C C7N NAP . . . B 2 18.328 4.42 7.237 1 18.24 ? C7N NAP 273 A 1 HETATM 40 O O7N NAP . . . B 2 19.517 5.005 7.707 1 16.77 ? O7N NAP 273 A 1 HETATM 41 N N7N NAP . . . B 2 18.287 3.214 6.657 1 15.39 ? N7N NAP 273 A 1 HETATM 42 C C4N NAP . . . B 2 15.808 4.686 6.891 1 17.83 ? C4N NAP 273 A 1 HETATM 43 C C5N NAP . . . B 2 14.68 5.506 6.963 1 16.88 ? C5N NAP 273 A 1 HETATM 44 C C6N NAP . . . B 2 14.771 6.758 7.577 1 17.57 ? C6N NAP 273 A 1 HETATM 45 P P2B NAP . . . B 2 16.03 10.221 17.4 0.8 18.72 ? P2B NAP 273 A 1 HETATM 46 O O1X NAP . . . B 2 16.668 11.17 18.377 0.8 17.97 ? O1X NAP 273 A 1 HETATM 47 O O2X NAP . . . B 2 15.829 8.881 18.067 0.8 19.12 ? O2X NAP 273 A 1 HETATM 48 O O3X NAP . . . B 2 14.685 10.764 16.97 0.8 19.49 ? O3X NAP 273 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #