data_2I2B # _model_server_result.job_id mJu54OgkjJgbIOgTz3CJwg _model_server_result.datetime_utc '2025-07-21 00:53:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":273}' # _entry.id 2I2B # _exptl.entry_id 2I2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-D-ERYTHROFURANOSYL-ADENOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I2B _cell.length_a 63.243 _cell.length_b 74.565 _cell.length_c 118.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.243 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.243 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C9 H11 N5 O3' _chem_comp.formula_weight 237.215 _chem_comp.id CC5 _chem_comp.mon_nstd_flag . _chem_comp.name BETA-D-ERYTHROFURANOSYL-ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CC5 doub 70 n y N1 C6 CC5 sing 71 n y C2 N3 CC5 sing 72 n y C2 H2 CC5 sing 73 n n N3 C4 CC5 doub 74 n y C4 N9 CC5 sing 75 n y C4 C5 CC5 sing 76 n y N9 C8 CC5 sing 77 n y N9 C1' CC5 sing 78 n n C8 N7 CC5 doub 79 n y C8 H8 CC5 sing 80 n n N7 C5 CC5 sing 81 n y C5 C6 CC5 doub 82 n y C6 N6 CC5 sing 83 n n N6 H6N1 CC5 sing 84 n n N6 H6N2 CC5 sing 85 n n C1' C2' CC5 sing 86 n n C1' O4' CC5 sing 87 n n C1' H1' CC5 sing 88 n n C2' C3' CC5 sing 89 n n C2' O2' CC5 sing 90 n n C2' H2' CC5 sing 91 n n C3' C4' CC5 sing 92 n n C3' O3' CC5 sing 93 n n C3' H3' CC5 sing 94 n n C4' O4' CC5 sing 95 n n C4' "H4'1" CC5 sing 96 n n C4' "H4'2" CC5 sing 97 n n O2' HA CC5 sing 98 n n O3' HB CC5 sing 99 n n # _atom_sites.entry_id 2I2B _atom_sites.fract_transf_matrix[1][1] 0.015812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CC5 A 1 273 101 CC5 CC5 . C 2 CC5 A 1 274 102 CC5 CC5 . D 3 CIT A 1 301 301 CIT CIT . E 4 GOL A 1 401 401 GOL GOL . F 5 HOH A 1 402 1 HOH HOH . F 5 HOH A 2 403 2 HOH HOH . F 5 HOH A 3 404 3 HOH HOH . F 5 HOH A 4 405 4 HOH HOH . F 5 HOH A 5 406 5 HOH HOH . F 5 HOH A 6 407 6 HOH HOH . F 5 HOH A 7 408 7 HOH HOH . F 5 HOH A 8 409 8 HOH HOH . F 5 HOH A 9 410 9 HOH HOH . F 5 HOH A 10 411 10 HOH HOH . F 5 HOH A 11 412 11 HOH HOH . F 5 HOH A 12 413 12 HOH HOH . F 5 HOH A 13 414 13 HOH HOH . F 5 HOH A 14 415 14 HOH HOH . F 5 HOH A 15 416 15 HOH HOH . F 5 HOH A 16 417 16 HOH HOH . F 5 HOH A 17 418 17 HOH HOH . F 5 HOH A 18 419 18 HOH HOH . F 5 HOH A 19 420 19 HOH HOH . F 5 HOH A 20 421 20 HOH HOH . F 5 HOH A 21 422 21 HOH HOH . F 5 HOH A 22 423 22 HOH HOH . F 5 HOH A 23 424 23 HOH HOH . F 5 HOH A 24 425 24 HOH HOH . F 5 HOH A 25 426 25 HOH HOH . F 5 HOH A 26 427 26 HOH HOH . F 5 HOH A 27 428 27 HOH HOH . F 5 HOH A 28 429 28 HOH HOH . F 5 HOH A 29 430 29 HOH HOH . F 5 HOH A 30 431 30 HOH HOH . F 5 HOH A 31 432 31 HOH HOH . F 5 HOH A 32 433 32 HOH HOH . F 5 HOH A 33 434 33 HOH HOH . F 5 HOH A 34 435 34 HOH HOH . F 5 HOH A 35 436 35 HOH HOH . F 5 HOH A 36 437 36 HOH HOH . F 5 HOH A 37 438 37 HOH HOH . F 5 HOH A 38 439 38 HOH HOH . F 5 HOH A 39 440 39 HOH HOH . F 5 HOH A 40 441 44 HOH HOH . F 5 HOH A 41 442 45 HOH HOH . F 5 HOH A 42 443 46 HOH HOH . F 5 HOH A 43 444 47 HOH HOH . F 5 HOH A 44 445 48 HOH HOH . F 5 HOH A 45 446 49 HOH HOH . F 5 HOH A 46 447 50 HOH HOH . F 5 HOH A 47 448 51 HOH HOH . F 5 HOH A 48 449 52 HOH HOH . F 5 HOH A 49 450 53 HOH HOH . F 5 HOH A 50 451 54 HOH HOH . F 5 HOH A 51 452 55 HOH HOH . F 5 HOH A 52 453 56 HOH HOH . F 5 HOH A 53 454 57 HOH HOH . F 5 HOH A 54 455 58 HOH HOH . F 5 HOH A 55 456 59 HOH HOH . F 5 HOH A 56 457 60 HOH HOH . F 5 HOH A 57 458 61 HOH HOH . F 5 HOH A 58 459 62 HOH HOH . F 5 HOH A 59 460 63 HOH HOH . F 5 HOH A 60 461 64 HOH HOH . F 5 HOH A 61 462 65 HOH HOH . F 5 HOH A 62 463 66 HOH HOH . F 5 HOH A 63 464 67 HOH HOH . F 5 HOH A 64 465 68 HOH HOH . F 5 HOH A 65 466 69 HOH HOH . F 5 HOH A 66 467 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CC5 . . . B 2 19.779 4.28 7.801 1 21.77 ? N1 CC5 273 A 1 HETATM 2 C C2 CC5 . . . B 2 20.098 5.393 8.451 1 21.64 ? C2 CC5 273 A 1 HETATM 3 N N3 CC5 . . . B 2 19.22 6.355 8.668 1 21.32 ? N3 CC5 273 A 1 HETATM 4 C C4 CC5 . . . B 2 17.965 6.234 8.211 1 21.22 ? C4 CC5 273 A 1 HETATM 5 N N9 CC5 . . . B 2 16.905 7.03 8.279 1 21.81 ? N9 CC5 273 A 1 HETATM 6 C C8 CC5 . . . B 2 15.89 6.413 7.656 1 21.99 ? C8 CC5 273 A 1 HETATM 7 N N7 CC5 . . . B 2 16.305 5.23 7.193 1 22.31 ? N7 CC5 273 A 1 HETATM 8 C C5 CC5 . . . B 2 17.586 5.088 7.527 1 21.53 ? C5 CC5 273 A 1 HETATM 9 C C6 CC5 . . . B 2 18.536 4.089 7.329 1 21.41 ? C6 CC5 273 A 1 HETATM 10 N N6 CC5 . . . B 2 18.241 2.966 6.678 1 21.86 ? N6 CC5 273 A 1 HETATM 11 C C1' CC5 . . . B 2 16.884 8.377 8.94 1 21.22 ? C1' CC5 273 A 1 HETATM 12 C C2' CC5 . . . B 2 16.734 9.489 7.885 1 20.92 ? C2' CC5 273 A 1 HETATM 13 C C3' CC5 . . . B 2 15.52 10.303 8.365 1 20.97 ? C3' CC5 273 A 1 HETATM 14 C C4' CC5 . . . B 2 15.4 9.912 9.845 1 19.63 ? C4' CC5 273 A 1 HETATM 15 O O4' CC5 . . . B 2 15.772 8.521 9.863 1 20.5 ? O4' CC5 273 A 1 HETATM 16 O O2' CC5 . . . B 2 17.923 10.299 7.882 1 20.41 ? O2' CC5 273 A 1 HETATM 17 O O3' CC5 . . . B 2 15.765 11.721 8.242 1 18.53 ? O3' CC5 273 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #