data_2I2B # _model_server_result.job_id 61XZBuR6-iS0V9AkRw1M9w _model_server_result.datetime_utc '2024-12-02 13:06:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 2I2B # _exptl.entry_id 2I2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I2B _cell.length_a 63.243 _cell.length_b 74.565 _cell.length_c 118.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.243 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.243 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 2I2B _atom_sites.fract_transf_matrix[1][1] 0.015812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CC5 A 1 273 101 CC5 CC5 . C 2 CC5 A 1 274 102 CC5 CC5 . D 3 CIT A 1 301 301 CIT CIT . E 4 GOL A 1 401 401 GOL GOL . F 5 HOH A 1 402 1 HOH HOH . F 5 HOH A 2 403 2 HOH HOH . F 5 HOH A 3 404 3 HOH HOH . F 5 HOH A 4 405 4 HOH HOH . F 5 HOH A 5 406 5 HOH HOH . F 5 HOH A 6 407 6 HOH HOH . F 5 HOH A 7 408 7 HOH HOH . F 5 HOH A 8 409 8 HOH HOH . F 5 HOH A 9 410 9 HOH HOH . F 5 HOH A 10 411 10 HOH HOH . F 5 HOH A 11 412 11 HOH HOH . F 5 HOH A 12 413 12 HOH HOH . F 5 HOH A 13 414 13 HOH HOH . F 5 HOH A 14 415 14 HOH HOH . F 5 HOH A 15 416 15 HOH HOH . F 5 HOH A 16 417 16 HOH HOH . F 5 HOH A 17 418 17 HOH HOH . F 5 HOH A 18 419 18 HOH HOH . F 5 HOH A 19 420 19 HOH HOH . F 5 HOH A 20 421 20 HOH HOH . F 5 HOH A 21 422 21 HOH HOH . F 5 HOH A 22 423 22 HOH HOH . F 5 HOH A 23 424 23 HOH HOH . F 5 HOH A 24 425 24 HOH HOH . F 5 HOH A 25 426 25 HOH HOH . F 5 HOH A 26 427 26 HOH HOH . F 5 HOH A 27 428 27 HOH HOH . F 5 HOH A 28 429 28 HOH HOH . F 5 HOH A 29 430 29 HOH HOH . F 5 HOH A 30 431 30 HOH HOH . F 5 HOH A 31 432 31 HOH HOH . F 5 HOH A 32 433 32 HOH HOH . F 5 HOH A 33 434 33 HOH HOH . F 5 HOH A 34 435 34 HOH HOH . F 5 HOH A 35 436 35 HOH HOH . F 5 HOH A 36 437 36 HOH HOH . F 5 HOH A 37 438 37 HOH HOH . F 5 HOH A 38 439 38 HOH HOH . F 5 HOH A 39 440 39 HOH HOH . F 5 HOH A 40 441 44 HOH HOH . F 5 HOH A 41 442 45 HOH HOH . F 5 HOH A 42 443 46 HOH HOH . F 5 HOH A 43 444 47 HOH HOH . F 5 HOH A 44 445 48 HOH HOH . F 5 HOH A 45 446 49 HOH HOH . F 5 HOH A 46 447 50 HOH HOH . F 5 HOH A 47 448 51 HOH HOH . F 5 HOH A 48 449 52 HOH HOH . F 5 HOH A 49 450 53 HOH HOH . F 5 HOH A 50 451 54 HOH HOH . F 5 HOH A 51 452 55 HOH HOH . F 5 HOH A 52 453 56 HOH HOH . F 5 HOH A 53 454 57 HOH HOH . F 5 HOH A 54 455 58 HOH HOH . F 5 HOH A 55 456 59 HOH HOH . F 5 HOH A 56 457 60 HOH HOH . F 5 HOH A 57 458 61 HOH HOH . F 5 HOH A 58 459 62 HOH HOH . F 5 HOH A 59 460 63 HOH HOH . F 5 HOH A 60 461 64 HOH HOH . F 5 HOH A 61 462 65 HOH HOH . F 5 HOH A 62 463 66 HOH HOH . F 5 HOH A 63 464 67 HOH HOH . F 5 HOH A 64 465 68 HOH HOH . F 5 HOH A 65 466 69 HOH HOH . F 5 HOH A 66 467 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 36.728 17.755 16.643 0.7 21.36 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . E 4 37.544 18.888 16.405 0.7 21.24 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . E 4 37.506 16.547 17.164 0.7 20.26 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . E 4 38.485 16.164 16.237 0.7 19.22 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . E 4 36.567 15.372 17.4 0.7 21.39 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . E 4 36.936 14.626 18.545 0.7 20.07 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #