data_2I2C # _model_server_result.job_id 1iJg8kSA7UAt3NLNka2K9g _model_server_result.datetime_utc '2024-11-22 15:03:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":273}' # _entry.id 2I2C # _exptl.entry_id 2I2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 564.598 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S,3S,4R,5R,2'S,3'S,4'R,5'R)-2,2'-[DITHIOBIS(METHYLENE)]BIS[5-(6-AMINO-9H-PURIN-9-YL)TETRAHYDROFURAN-3,4-DIOL]" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I2C _cell.length_a 63.07 _cell.length_b 75.297 _cell.length_c 118.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.07 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.07 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H24 N10 O6 S2' _chem_comp.formula_weight 564.598 _chem_comp.id DTA _chem_comp.mon_nstd_flag . _chem_comp.name "(2S,3S,4R,5R,2'S,3'S,4'R,5'R)-2,2'-[DITHIOBIS(METHYLENE)]BIS[5-(6-AMINO-9H-PURIN-9-YL)TETRAHYDROFURAN-3,4-DIOL]" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DI-(5'-THIOADENOSINE)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N62 C62 DTA sing 83 n n N62 H621 DTA sing 84 n n N62 H622 DTA sing 85 n n C62 C52 DTA doub 86 n y C62 N12 DTA sing 87 n y N12 C22 DTA doub 88 n y C22 N32 DTA sing 89 n y C22 H22 DTA sing 90 n n N32 C42 DTA doub 91 n y C42 C52 DTA sing 92 n y C42 N92 DTA sing 93 n y C52 N72 DTA sing 94 n y N72 C82 DTA doub 95 n y C82 N92 DTA sing 96 n y C82 H82 DTA sing 97 n n N92 C1' DTA sing 98 n n C1' C2' DTA sing 99 n n C1' O4' DTA sing 100 n n C1' H1' DTA sing 101 n n O4' C4' DTA sing 102 n n C2' O2' DTA sing 103 n n C2' C3' DTA sing 104 n n C2' H2' DTA sing 105 n n O2' HO2' DTA sing 106 n n C3' O3' DTA sing 107 n n C3' C4' DTA sing 108 n n C3' H3' DTA sing 109 n n O3' HO3' DTA sing 110 n n C4' C5' DTA sing 111 n n C4' H4' DTA sing 112 n n C5' S5' DTA sing 113 n n C5' "H5'1" DTA sing 114 n n C5' "H5'2" DTA sing 115 n n S5' S5R DTA sing 116 n n S5R C5R DTA sing 117 n n C5R C4R DTA sing 118 n n C5R H5R1 DTA sing 119 n n C5R H5R2 DTA sing 120 n n C4R O4R DTA sing 121 n n C4R C3R DTA sing 122 n n C4R H4R DTA sing 123 n n O4R C1R DTA sing 124 n n C3R C2R DTA sing 125 n n C3R O3R DTA sing 126 n n C3R H3R DTA sing 127 n n O3R HO3R DTA sing 128 n n C2R C1R DTA sing 129 n n C2R O2R DTA sing 130 n n C2R H2R DTA sing 131 n n O2R HO2R DTA sing 132 n n C1R N91 DTA sing 133 n n C1R H1R DTA sing 134 n n N91 C81 DTA sing 135 n y N91 C41 DTA sing 136 n y C81 N71 DTA doub 137 n y C81 H81 DTA sing 138 n n N71 C51 DTA sing 139 n y C51 C61 DTA sing 140 n y C51 C41 DTA doub 141 n y C41 N31 DTA sing 142 n y N31 C21 DTA doub 143 n y C21 N11 DTA sing 144 n y C21 H21 DTA sing 145 n n N11 C61 DTA doub 146 n y C61 N61 DTA sing 147 n n N61 H611 DTA sing 148 n n N61 H612 DTA sing 149 n n # _atom_sites.entry_id 2I2C _atom_sites.fract_transf_matrix[1][1] 0.015855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTA A 1 273 201 DTA DTA . C 3 PG4 A 1 301 301 PG4 PG4 . D 4 HOH A 1 302 1 HOH HOH . D 4 HOH A 2 303 2 HOH HOH . D 4 HOH A 3 304 3 HOH HOH . D 4 HOH A 4 305 4 HOH HOH . D 4 HOH A 5 306 5 HOH HOH . D 4 HOH A 6 307 6 HOH HOH . D 4 HOH A 7 308 7 HOH HOH . D 4 HOH A 8 309 8 HOH HOH . D 4 HOH A 9 310 9 HOH HOH . D 4 HOH A 10 311 10 HOH HOH . D 4 HOH A 11 312 11 HOH HOH . D 4 HOH A 12 313 12 HOH HOH . D 4 HOH A 13 314 13 HOH HOH . D 4 HOH A 14 315 14 HOH HOH . D 4 HOH A 15 316 16 HOH HOH . D 4 HOH A 16 317 18 HOH HOH . D 4 HOH A 17 318 19 HOH HOH . D 4 HOH A 18 319 20 HOH HOH . D 4 HOH A 19 320 21 HOH HOH . D 4 HOH A 20 321 22 HOH HOH . D 4 HOH A 21 322 24 HOH HOH . D 4 HOH A 22 323 26 HOH HOH . D 4 HOH A 23 324 27 HOH HOH . D 4 HOH A 24 325 28 HOH HOH . D 4 HOH A 25 326 29 HOH HOH . D 4 HOH A 26 327 30 HOH HOH . D 4 HOH A 27 328 31 HOH HOH . D 4 HOH A 28 329 32 HOH HOH . D 4 HOH A 29 330 33 HOH HOH . D 4 HOH A 30 331 34 HOH HOH . D 4 HOH A 31 332 35 HOH HOH . D 4 HOH A 32 333 36 HOH HOH . D 4 HOH A 33 334 37 HOH HOH . D 4 HOH A 34 335 38 HOH HOH . D 4 HOH A 35 336 39 HOH HOH . D 4 HOH A 36 337 40 HOH HOH . D 4 HOH A 37 338 41 HOH HOH . D 4 HOH A 38 339 42 HOH HOH . D 4 HOH A 39 340 43 HOH HOH . D 4 HOH A 40 341 44 HOH HOH . D 4 HOH A 41 342 45 HOH HOH . D 4 HOH A 42 343 46 HOH HOH . D 4 HOH A 43 344 47 HOH HOH . D 4 HOH A 44 345 48 HOH HOH . D 4 HOH A 45 346 49 HOH HOH . D 4 HOH A 46 347 50 HOH HOH . D 4 HOH A 47 348 51 HOH HOH . D 4 HOH A 48 349 52 HOH HOH . D 4 HOH A 49 350 53 HOH HOH . D 4 HOH A 50 351 54 HOH HOH . D 4 HOH A 51 352 55 HOH HOH . D 4 HOH A 52 353 56 HOH HOH . D 4 HOH A 53 354 57 HOH HOH . D 4 HOH A 54 355 58 HOH HOH . D 4 HOH A 55 356 59 HOH HOH . D 4 HOH A 56 357 60 HOH HOH . D 4 HOH A 57 358 61 HOH HOH . D 4 HOH A 58 359 62 HOH HOH . D 4 HOH A 59 360 63 HOH HOH . D 4 HOH A 60 361 64 HOH HOH . D 4 HOH A 61 362 65 HOH HOH . D 4 HOH A 62 363 66 HOH HOH . D 4 HOH A 63 364 67 HOH HOH . D 4 HOH A 64 365 68 HOH HOH . D 4 HOH A 65 366 69 HOH HOH . D 4 HOH A 66 367 70 HOH HOH . D 4 HOH A 67 368 71 HOH HOH . D 4 HOH A 68 369 73 HOH HOH . D 4 HOH A 69 370 74 HOH HOH . D 4 HOH A 70 371 75 HOH HOH . D 4 HOH A 71 372 77 HOH HOH . D 4 HOH A 72 373 78 HOH HOH . D 4 HOH A 73 374 79 HOH HOH . D 4 HOH A 74 375 80 HOH HOH . D 4 HOH A 75 376 83 HOH HOH . D 4 HOH A 76 377 84 HOH HOH . D 4 HOH A 77 378 85 HOH HOH . D 4 HOH A 78 379 86 HOH HOH . D 4 HOH A 79 380 87 HOH HOH . D 4 HOH A 80 381 88 HOH HOH . D 4 HOH A 81 382 89 HOH HOH . D 4 HOH A 82 383 90 HOH HOH . D 4 HOH A 83 384 91 HOH HOH . D 4 HOH A 84 385 92 HOH HOH . D 4 HOH A 85 386 93 HOH HOH . D 4 HOH A 86 387 94 HOH HOH . D 4 HOH A 87 388 95 HOH HOH . D 4 HOH A 88 389 96 HOH HOH . D 4 HOH A 89 390 97 HOH HOH . D 4 HOH A 90 391 99 HOH HOH . D 4 HOH A 91 392 100 HOH HOH . D 4 HOH A 92 393 102 HOH HOH . D 4 HOH A 93 394 104 HOH HOH . D 4 HOH A 94 395 106 HOH HOH . D 4 HOH A 95 396 107 HOH HOH . D 4 HOH A 96 397 108 HOH HOH . D 4 HOH A 97 398 109 HOH HOH . D 4 HOH A 98 399 110 HOH HOH . D 4 HOH A 99 400 111 HOH HOH . D 4 HOH A 100 401 112 HOH HOH . D 4 HOH A 101 402 113 HOH HOH . D 4 HOH A 102 403 114 HOH HOH . D 4 HOH A 103 404 118 HOH HOH . D 4 HOH A 104 405 119 HOH HOH . D 4 HOH A 105 406 121 HOH HOH . D 4 HOH A 106 407 122 HOH HOH . D 4 HOH A 107 408 123 HOH HOH . D 4 HOH A 108 409 124 HOH HOH . D 4 HOH A 109 410 125 HOH HOH . D 4 HOH A 110 411 127 HOH HOH . D 4 HOH A 111 412 128 HOH HOH . D 4 HOH A 112 413 130 HOH HOH . D 4 HOH A 113 414 132 HOH HOH . D 4 HOH A 114 415 133 HOH HOH . D 4 HOH A 115 416 134 HOH HOH . D 4 HOH A 116 417 136 HOH HOH . D 4 HOH A 117 418 137 HOH HOH . D 4 HOH A 118 419 138 HOH HOH . D 4 HOH A 119 420 139 HOH HOH . D 4 HOH A 120 421 141 HOH HOH . D 4 HOH A 121 422 142 HOH HOH . D 4 HOH A 122 423 143 HOH HOH . D 4 HOH A 123 424 144 HOH HOH . D 4 HOH A 124 425 145 HOH HOH . D 4 HOH A 125 426 146 HOH HOH . D 4 HOH A 126 427 147 HOH HOH . D 4 HOH A 127 428 148 HOH HOH . D 4 HOH A 128 429 149 HOH HOH . D 4 HOH A 129 430 150 HOH HOH . D 4 HOH A 130 431 151 HOH HOH . D 4 HOH A 131 432 152 HOH HOH . D 4 HOH A 132 433 153 HOH HOH . D 4 HOH A 133 434 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N62 DTA . . . B 2 18.559 3.094 6.706 1 30.28 ? N62 DTA 273 A 1 HETATM 2 C C62 DTA . . . B 2 18.724 4.25 7.366 1 30.49 ? C62 DTA 273 A 1 HETATM 3 N N12 DTA . . . B 2 19.929 4.553 7.872 1 29.16 ? N12 DTA 273 A 1 HETATM 4 C C22 DTA . . . B 2 20.159 5.671 8.541 1 31.08 ? C22 DTA 273 A 1 HETATM 5 N N32 DTA . . . B 2 19.198 6.559 8.738 1 30.65 ? N32 DTA 273 A 1 HETATM 6 C C42 DTA . . . B 2 17.958 6.319 8.26 1 30.7 ? C42 DTA 273 A 1 HETATM 7 C C52 DTA . . . B 2 17.679 5.159 7.557 1 30.2 ? C52 DTA 273 A 1 HETATM 8 N N72 DTA . . . B 2 16.388 5.202 7.217 1 31.38 ? N72 DTA 273 A 1 HETATM 9 C C82 DTA . . . B 2 15.874 6.35 7.683 1 30.37 ? C82 DTA 273 A 1 HETATM 10 N N92 DTA . . . B 2 16.839 7.031 8.319 1 30.7 ? N92 DTA 273 A 1 HETATM 11 C C1' DTA . . . B 2 16.751 8.349 9.005 1 30.58 ? C1' DTA 273 A 1 HETATM 12 O O4' DTA . . . B 2 15.552 8.444 9.809 1 31.3 ? O4' DTA 273 A 1 HETATM 13 C C2' DTA . . . B 2 16.651 9.464 7.955 1 30.54 ? C2' DTA 273 A 1 HETATM 14 O O2' DTA . . . B 2 17.833 10.271 8.007 1 29.57 ? O2' DTA 273 A 1 HETATM 15 C C3' DTA . . . B 2 15.419 10.264 8.407 1 31.32 ? C3' DTA 273 A 1 HETATM 16 O O3' DTA . . . B 2 15.647 11.668 8.327 1 30.52 ? O3' DTA 273 A 1 HETATM 17 C C4' DTA . . . B 2 15.243 9.836 9.863 1 31.95 ? C4' DTA 273 A 1 HETATM 18 C C5' DTA . . . B 2 13.778 10.034 10.267 1 32.94 ? C5' DTA 273 A 1 HETATM 19 S S5' DTA . . . B 2 13.307 9.307 11.885 0.5 34.68 ? S5' DTA 273 A 1 HETATM 20 S S5R DTA . . . B 2 14.92 9.549 13.121 0.5 34.06 ? S5R DTA 273 A 1 HETATM 21 C C5R DTA . . . B 2 15.454 7.838 13.54 1 34.06 ? C5R DTA 273 A 1 HETATM 22 C C4R DTA . . . B 2 16.975 7.671 13.825 1 33.55 ? C4R DTA 273 A 1 HETATM 23 O O4R DTA . . . B 2 17.744 8.572 12.974 1 34.41 ? O4R DTA 273 A 1 HETATM 24 C C3R DTA . . . B 2 17.348 8.026 15.275 1 33.84 ? C3R DTA 273 A 1 HETATM 25 O O3R DTA . . . B 2 18.281 7.058 15.788 1 33.97 ? O3R DTA 273 A 1 HETATM 26 C C2R DTA . . . B 2 18.006 9.4 15.154 1 32.96 ? C2R DTA 273 A 1 HETATM 27 O O2R DTA . . . B 2 18.974 9.618 16.194 1 33.26 ? O2R DTA 273 A 1 HETATM 28 C C1R DTA . . . B 2 18.706 9.261 13.815 1 32.22 ? C1R DTA 273 A 1 HETATM 29 N N91 DTA . . . B 2 19.023 10.576 13.193 1 31.71 ? N91 DTA 273 A 1 HETATM 30 C C81 DTA . . . B 2 18.155 11.526 12.828 1 31.22 ? C81 DTA 273 A 1 HETATM 31 N N71 DTA . . . B 2 18.819 12.557 12.305 1 30.78 ? N71 DTA 273 A 1 HETATM 32 C C51 DTA . . . B 2 20.116 12.254 12.324 1 31.25 ? C51 DTA 273 A 1 HETATM 33 C C41 DTA . . . B 2 20.245 10.991 12.888 1 31.39 ? C41 DTA 273 A 1 HETATM 34 N N31 DTA . . . B 2 21.465 10.438 13.038 1 31.48 ? N31 DTA 273 A 1 HETATM 35 C C21 DTA . . . B 2 22.548 11.094 12.64 1 31.4 ? C21 DTA 273 A 1 HETATM 36 N N11 DTA . . . B 2 22.462 12.304 12.096 1 31.1 ? N11 DTA 273 A 1 HETATM 37 C C61 DTA . . . B 2 21.276 12.914 11.914 1 31.66 ? C61 DTA 273 A 1 HETATM 38 N N61 DTA . . . B 2 21.218 14.127 11.362 1 31.4 ? N61 DTA 273 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #