data_2I2F # _model_server_result.job_id JIfhhVKli-soDkp1As74xA _model_server_result.datetime_utc '2024-11-22 09:16:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":274}' # _entry.id 2I2F # _exptl.entry_id 2I2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I2F _cell.length_a 62.428 _cell.length_b 76.361 _cell.length_c 119.202 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.428 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.428 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 2I2F _atom_sites.fract_transf_matrix[1][1] 0.016018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 273 101 PO4 PO4 . C 3 NAD A 1 274 201 NAD NAD . D 4 GOL A 1 301 301 GOL GOL . E 5 HOH A 1 302 1 HOH HOH . E 5 HOH A 2 303 2 HOH HOH . E 5 HOH A 3 304 3 HOH HOH . E 5 HOH A 4 305 4 HOH HOH . E 5 HOH A 5 306 5 HOH HOH . E 5 HOH A 6 307 6 HOH HOH . E 5 HOH A 7 308 7 HOH HOH . E 5 HOH A 8 309 8 HOH HOH . E 5 HOH A 9 310 9 HOH HOH . E 5 HOH A 10 311 10 HOH HOH . E 5 HOH A 11 312 11 HOH HOH . E 5 HOH A 12 313 12 HOH HOH . E 5 HOH A 13 314 13 HOH HOH . E 5 HOH A 14 315 14 HOH HOH . E 5 HOH A 15 316 16 HOH HOH . E 5 HOH A 16 317 17 HOH HOH . E 5 HOH A 17 318 18 HOH HOH . E 5 HOH A 18 319 19 HOH HOH . E 5 HOH A 19 320 20 HOH HOH . E 5 HOH A 20 321 21 HOH HOH . E 5 HOH A 21 322 22 HOH HOH . E 5 HOH A 22 323 23 HOH HOH . E 5 HOH A 23 324 24 HOH HOH . E 5 HOH A 24 325 25 HOH HOH . E 5 HOH A 25 326 26 HOH HOH . E 5 HOH A 26 327 27 HOH HOH . E 5 HOH A 27 328 28 HOH HOH . E 5 HOH A 28 329 29 HOH HOH . E 5 HOH A 29 330 30 HOH HOH . E 5 HOH A 30 331 31 HOH HOH . E 5 HOH A 31 332 32 HOH HOH . E 5 HOH A 32 333 33 HOH HOH . E 5 HOH A 33 334 34 HOH HOH . E 5 HOH A 34 335 35 HOH HOH . E 5 HOH A 35 336 36 HOH HOH . E 5 HOH A 36 337 37 HOH HOH . E 5 HOH A 37 338 38 HOH HOH . E 5 HOH A 38 339 39 HOH HOH . E 5 HOH A 39 340 40 HOH HOH . E 5 HOH A 40 341 41 HOH HOH . E 5 HOH A 41 342 42 HOH HOH . E 5 HOH A 42 343 43 HOH HOH . E 5 HOH A 43 344 44 HOH HOH . E 5 HOH A 44 345 45 HOH HOH . E 5 HOH A 45 346 46 HOH HOH . E 5 HOH A 46 347 47 HOH HOH . E 5 HOH A 47 348 48 HOH HOH . E 5 HOH A 48 349 49 HOH HOH . E 5 HOH A 49 350 50 HOH HOH . E 5 HOH A 50 351 51 HOH HOH . E 5 HOH A 51 352 52 HOH HOH . E 5 HOH A 52 353 53 HOH HOH . E 5 HOH A 53 354 54 HOH HOH . E 5 HOH A 54 355 55 HOH HOH . E 5 HOH A 55 356 56 HOH HOH . E 5 HOH A 56 357 57 HOH HOH . E 5 HOH A 57 358 58 HOH HOH . E 5 HOH A 58 359 59 HOH HOH . E 5 HOH A 59 360 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 13.431 6.117 12.094 0.7 26.55 ? PA NAD 274 A 1 HETATM 2 O O1A NAD . . . C 3 13.188 5.042 13.082 0.7 27.03 ? O1A NAD 274 A 1 HETATM 3 O O2A NAD . . . C 3 13.333 5.591 10.713 0.7 26.67 ? O2A NAD 274 A 1 HETATM 4 O O5B NAD . . . C 3 14.881 6.77 12.37 0.7 27.04 ? O5B NAD 274 A 1 HETATM 5 C C5B NAD . . . C 3 15.199 7.333 13.624 0.8 26.4 ? C5B NAD 274 A 1 HETATM 6 C C4B NAD . . . C 3 16.691 7.197 13.922 1 26.16 ? C4B NAD 274 A 1 HETATM 7 O O4B NAD . . . C 3 17.444 8.077 13.101 1 26.38 ? O4B NAD 274 A 1 HETATM 8 C C3B NAD . . . C 3 16.988 7.583 15.364 1 26.33 ? C3B NAD 274 A 1 HETATM 9 O O3B NAD . . . C 3 17.905 6.673 15.927 1 25.52 ? O3B NAD 274 A 1 HETATM 10 C C2B NAD . . . C 3 17.595 8.974 15.265 1 26.5 ? C2B NAD 274 A 1 HETATM 11 O O2B NAD . . . C 3 18.514 9.244 16.305 1 27.39 ? O2B NAD 274 A 1 HETATM 12 C C1B NAD . . . C 3 18.263 8.917 13.899 1 25.53 ? C1B NAD 274 A 1 HETATM 13 N N9A NAD . . . C 3 18.465 10.259 13.318 1 25.44 ? N9A NAD 274 A 1 HETATM 14 C C8A NAD . . . C 3 17.538 11.245 13.075 1 25.09 ? C8A NAD 274 A 1 HETATM 15 N N7A NAD . . . C 3 18.173 12.317 12.54 1 24.66 ? N7A NAD 274 A 1 HETATM 16 C C5A NAD . . . C 3 19.492 12.022 12.438 1 25.04 ? C5A NAD 274 A 1 HETATM 17 C C6A NAD . . . C 3 20.595 12.734 11.968 1 24.84 ? C6A NAD 274 A 1 HETATM 18 N N6A NAD . . . C 3 20.422 13.835 11.241 1 24.42 ? N6A NAD 274 A 1 HETATM 19 N N1A NAD . . . C 3 21.848 12.146 11.995 1 24.82 ? N1A NAD 274 A 1 HETATM 20 C C2A NAD . . . C 3 22.012 10.865 12.476 1 24.86 ? C2A NAD 274 A 1 HETATM 21 N N3A NAD . . . C 3 20.92 10.163 12.944 1 25.66 ? N3A NAD 274 A 1 HETATM 22 C C4A NAD . . . C 3 19.684 10.732 12.921 1 25.22 ? C4A NAD 274 A 1 HETATM 23 O O3 NAD . . . C 3 12.385 7.316 12.356 0.6 27.01 ? O3 NAD 274 A 1 HETATM 24 P PN NAD . . . C 3 11.864 8.296 11.184 0.5 26.92 ? PN NAD 274 A 1 HETATM 25 O O1N NAD . . . C 3 11.043 7.514 10.23 0.5 26.92 ? O1N NAD 274 A 1 HETATM 26 O O2N NAD . . . C 3 11.302 9.505 11.834 0.5 27.2 ? O2N NAD 274 A 1 HETATM 27 O O5D NAD . . . C 3 13.209 8.695 10.407 0.6 26.62 ? O5D NAD 274 A 1 HETATM 28 C C5D NAD . . . C 3 13.842 9.939 10.606 0.8 25.98 ? C5D NAD 274 A 1 HETATM 29 C C4D NAD . . . C 3 15.24 9.846 10.02 1 25.08 ? C4D NAD 274 A 1 HETATM 30 O O4D NAD . . . C 3 15.711 8.507 10.044 1 25.38 ? O4D NAD 274 A 1 HETATM 31 C C3D NAD . . . C 3 15.251 10.251 8.555 1 24.65 ? C3D NAD 274 A 1 HETATM 32 O O3D NAD . . . C 3 15.388 11.654 8.39 1 23.25 ? O3D NAD 274 A 1 HETATM 33 C C2D NAD . . . C 3 16.406 9.443 7.985 1 23.62 ? C2D NAD 274 A 1 HETATM 34 O O2D NAD . . . C 3 17.58 10.209 7.963 1 22.14 ? O2D NAD 274 A 1 HETATM 35 C C1D NAD . . . C 3 16.593 8.281 8.957 1 23.92 ? C1D NAD 274 A 1 HETATM 36 N N1N NAD . . . C 3 16.353 6.985 8.28 1 23.95 ? N1N NAD 274 A 1 HETATM 37 C C2N NAD . . . C 3 17.409 6.128 8.174 1 23.4 ? C2N NAD 274 A 1 HETATM 38 C C3N NAD . . . C 3 17.272 4.896 7.543 1 22.25 ? C3N NAD 274 A 1 HETATM 39 C C7N NAD . . . C 3 18.532 4.128 7.27 1 21.75 ? C7N NAD 274 A 1 HETATM 40 O O7N NAD . . . C 3 19.75 4.729 7.657 1 19.94 ? O7N NAD 274 A 1 HETATM 41 N N7N NAD . . . C 3 18.482 2.924 6.7 1 20.33 ? N7N NAD 274 A 1 HETATM 42 C C4N NAD . . . C 3 16.034 4.527 7.008 1 22.63 ? C4N NAD 274 A 1 HETATM 43 C C5N NAD . . . C 3 14.955 5.407 7.115 1 22.87 ? C5N NAD 274 A 1 HETATM 44 C C6N NAD . . . C 3 15.128 6.635 7.756 1 23.08 ? C6N NAD 274 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #