data_2I2F # _model_server_result.job_id vsnZlSLoUZAG1y0cdC_rtQ _model_server_result.datetime_utc '2024-10-19 22:32:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2I2F # _exptl.entry_id 2I2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I2F _cell.length_a 62.428 _cell.length_b 76.361 _cell.length_c 119.202 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.428 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.428 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2I2F _atom_sites.fract_transf_matrix[1][1] 0.016018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 273 101 PO4 PO4 . C 3 NAD A 1 274 201 NAD NAD . D 4 GOL A 1 301 301 GOL GOL . E 5 HOH A 1 302 1 HOH HOH . E 5 HOH A 2 303 2 HOH HOH . E 5 HOH A 3 304 3 HOH HOH . E 5 HOH A 4 305 4 HOH HOH . E 5 HOH A 5 306 5 HOH HOH . E 5 HOH A 6 307 6 HOH HOH . E 5 HOH A 7 308 7 HOH HOH . E 5 HOH A 8 309 8 HOH HOH . E 5 HOH A 9 310 9 HOH HOH . E 5 HOH A 10 311 10 HOH HOH . E 5 HOH A 11 312 11 HOH HOH . E 5 HOH A 12 313 12 HOH HOH . E 5 HOH A 13 314 13 HOH HOH . E 5 HOH A 14 315 14 HOH HOH . E 5 HOH A 15 316 16 HOH HOH . E 5 HOH A 16 317 17 HOH HOH . E 5 HOH A 17 318 18 HOH HOH . E 5 HOH A 18 319 19 HOH HOH . E 5 HOH A 19 320 20 HOH HOH . E 5 HOH A 20 321 21 HOH HOH . E 5 HOH A 21 322 22 HOH HOH . E 5 HOH A 22 323 23 HOH HOH . E 5 HOH A 23 324 24 HOH HOH . E 5 HOH A 24 325 25 HOH HOH . E 5 HOH A 25 326 26 HOH HOH . E 5 HOH A 26 327 27 HOH HOH . E 5 HOH A 27 328 28 HOH HOH . E 5 HOH A 28 329 29 HOH HOH . E 5 HOH A 29 330 30 HOH HOH . E 5 HOH A 30 331 31 HOH HOH . E 5 HOH A 31 332 32 HOH HOH . E 5 HOH A 32 333 33 HOH HOH . E 5 HOH A 33 334 34 HOH HOH . E 5 HOH A 34 335 35 HOH HOH . E 5 HOH A 35 336 36 HOH HOH . E 5 HOH A 36 337 37 HOH HOH . E 5 HOH A 37 338 38 HOH HOH . E 5 HOH A 38 339 39 HOH HOH . E 5 HOH A 39 340 40 HOH HOH . E 5 HOH A 40 341 41 HOH HOH . E 5 HOH A 41 342 42 HOH HOH . E 5 HOH A 42 343 43 HOH HOH . E 5 HOH A 43 344 44 HOH HOH . E 5 HOH A 44 345 45 HOH HOH . E 5 HOH A 45 346 46 HOH HOH . E 5 HOH A 46 347 47 HOH HOH . E 5 HOH A 47 348 48 HOH HOH . E 5 HOH A 48 349 49 HOH HOH . E 5 HOH A 49 350 50 HOH HOH . E 5 HOH A 50 351 51 HOH HOH . E 5 HOH A 51 352 52 HOH HOH . E 5 HOH A 52 353 53 HOH HOH . E 5 HOH A 53 354 54 HOH HOH . E 5 HOH A 54 355 55 HOH HOH . E 5 HOH A 55 356 56 HOH HOH . E 5 HOH A 56 357 57 HOH HOH . E 5 HOH A 57 358 58 HOH HOH . E 5 HOH A 58 359 59 HOH HOH . E 5 HOH A 59 360 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 32.233 26.309 12.952 1 28.53 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . D 4 33.216 25.814 12.056 1 28.63 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . D 4 31.249 25.212 13.354 1 27.57 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . D 4 30.146 25.75 14.05 1 28.97 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . D 4 31.922 24.167 14.234 1 26.84 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . D 4 31.372 22.921 13.878 1 24.3 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #