data_2I36 # _model_server_result.job_id tWr4gLep_uvUPE1bju3QsA _model_server_result.datetime_utc '2025-01-03 01:53:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 2I36 # _exptl.entry_id 2I36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2I36 _cell.length_a 159.866 _cell.length_b 159.866 _cell.length_c 142.15 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G 2 1 C,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG A 505 NAG 2 n D NAG 2 D 2 NAG A 504 NAG 2 n D MAN 3 D 3 MAN A 503 MAN 3 n E NAG 1 E 1 NAG A 705 NAG 3 n E NAG 2 E 2 NAG A 704 NAG 2 n F NAG 1 F 1 NAG B 505 NAG 2 n F NAG 2 F 2 NAG B 504 NAG 2 n F MAN 3 F 3 MAN B 503 MAN 3 n G NAG 1 G 1 NAG B 705 NAG 3 n G NAG 2 G 2 NAG B 704 NAG 2 n H NAG 1 H 1 NAG C 505 NAG 2 n H NAG 2 H 2 NAG C 504 NAG 2 n H MAN 3 H 3 MAN C 503 MAN 3 n I NAG 1 I 1 NAG C 705 NAG 3 n I NAG 2 I 2 NAG C 704 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 111 B CYS 110 1_555 B SG CYS 188 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 111 C CYS 110 1_555 C SG CYS 188 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A ND2 ASN 3 A ASN 2 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 A ND2 ASN 16 A ASN 15 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A SG CYS 324 A CYS 323 1_555 J C1 PLM . A PLM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? covale ? covale5 B C ACE 1 B ACE 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B ND2 ASN 3 B ASN 2 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale7 B ND2 ASN 16 B ASN 15 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale8 C C ACE 1 C ACE 0 1_555 C N MET 2 C MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 C ND2 ASN 3 C ASN 2 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale10 C ND2 ASN 16 C ASN 15 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 D O4 NAG . D NAG 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 F O4 NAG . F NAG 2 1_555 F C1 MAN . F MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale16 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale17 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale18 H O4 NAG . H NAG 2 1_555 H C1 MAN . H MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale19 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 318 n n C1 O2 PLM doub 319 n n C1 C2 PLM sing 320 n n O1 H PLM sing 321 n n C2 C3 PLM sing 322 n n C2 H21 PLM sing 323 n n C2 H22 PLM sing 324 n n C3 C4 PLM sing 325 n n C3 H31 PLM sing 326 n n C3 H32 PLM sing 327 n n C4 C5 PLM sing 328 n n C4 H41 PLM sing 329 n n C4 H42 PLM sing 330 n n C5 C6 PLM sing 331 n n C5 H51 PLM sing 332 n n C5 H52 PLM sing 333 n n C6 C7 PLM sing 334 n n C6 H61 PLM sing 335 n n C6 H62 PLM sing 336 n n C7 C8 PLM sing 337 n n C7 H71 PLM sing 338 n n C7 H72 PLM sing 339 n n C8 C9 PLM sing 340 n n C8 H81 PLM sing 341 n n C8 H82 PLM sing 342 n n C9 CA PLM sing 343 n n C9 H91 PLM sing 344 n n C9 H92 PLM sing 345 n n CA CB PLM sing 346 n n CA HA1 PLM sing 347 n n CA HA2 PLM sing 348 n n CB CC PLM sing 349 n n CB HB1 PLM sing 350 n n CB HB2 PLM sing 351 n n CC CD PLM sing 352 n n CC HC1 PLM sing 353 n n CC HC2 PLM sing 354 n n CD CE PLM sing 355 n n CD HD1 PLM sing 356 n n CD HD2 PLM sing 357 n n CE CF PLM sing 358 n n CE HE1 PLM sing 359 n n CE HE2 PLM sing 360 n n CF CG PLM sing 361 n n CF HF1 PLM sing 362 n n CF HF2 PLM sing 363 n n CG HG1 PLM sing 364 n n CG HG2 PLM sing 365 n n CG HG3 PLM sing 366 n n # _atom_sites.entry_id 2I36 _atom_sites.fract_transf_matrix[1][1] 0.006255 _atom_sites.fract_transf_matrix[1][2] 0.003611 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id J _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id PLM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id PLM _pdbx_nonpoly_scheme.auth_mon_id PLY _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . J 4 -34.246 47.895 67.184 1 185 ? C1 PLM 401 A 1 HETATM 2 O O2 PLM . . . J 4 -33.943 47.538 68.311 1 185 ? O2 PLM 401 A 1 HETATM 3 C C2 PLM . . . J 4 -34.427 46.875 66.084 1 185 ? C2 PLM 401 A 1 HETATM 4 C C3 PLM . . . J 4 -35.778 47.079 65.407 1 185 ? C3 PLM 401 A 1 HETATM 5 C C4 PLM . . . J 4 -36.897 46.42 66.207 1 185 ? C4 PLM 401 A 1 HETATM 6 C C5 PLM . . . J 4 -37.956 45.821 65.288 1 185 ? C5 PLM 401 A 1 HETATM 7 C C6 PLM . . . J 4 -37.337 44.845 64.294 1 185 ? C6 PLM 401 A 1 HETATM 8 C C7 PLM . . . J 4 -38.327 44.481 63.194 1 185 ? C7 PLM 401 A 1 HETATM 9 C C8 PLM . . . J 4 -37.781 43.361 62.315 1 185 ? C8 PLM 401 A 1 HETATM 10 C C9 PLM . . . J 4 -38.719 43.065 61.151 1 185 ? C9 PLM 401 A 1 HETATM 11 C CA PLM . . . J 4 -37.984 42.341 60.028 1 185 ? CA PLM 401 A 1 HETATM 12 C CB PLM . . . J 4 -38.794 42.36 58.736 1 185 ? CB PLM 401 A 1 HETATM 13 C CC PLM . . . J 4 -38.046 43.094 57.629 1 185 ? CC PLM 401 A 1 HETATM 14 C CD PLM . . . J 4 -37.109 42.157 56.875 1 185 ? CD PLM 401 A 1 HETATM 15 C CE PLM . . . J 4 -37.109 42.464 55.381 1 185 ? CE PLM 401 A 1 HETATM 16 C CF PLM . . . J 4 -35.825 43.172 54.964 1 185 ? CF PLM 401 A 1 HETATM 17 C CG PLM . . . J 4 -35.88 43.575 53.506 1 185 ? CG PLM 401 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 17 #