data_2I3C # _model_server_result.job_id wJ4Q7id9KNVxgBv6t2NMIw _model_server_result.datetime_utc '2024-11-27 06:00:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":315}' # _entry.id 2I3C # _exptl.entry_id 2I3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I3C _cell.length_a 145.551 _cell.length_b 145.551 _cell.length_c 103.396 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 83 A LYS 81 1_555 A N MSE 84 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 84 A MSE 82 1_555 A N SER 85 A SER 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ASN 123 A ASN 121 1_555 A N MSE 124 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C MSE 124 A MSE 122 1_555 A N GLY 125 A GLY 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C GLN 140 A GLN 138 1_555 A N MSE 141 A MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 A C MSE 141 A MSE 139 1_555 A N PHE 142 A PHE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C GLN 196 A GLN 194 1_555 A N MSE 197 A MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 197 A MSE 195 1_555 A N ARG 198 A ARG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C LYS 199 A LYS 197 1_555 A N MSE 200 A MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 200 A MSE 198 1_555 A N ILE 201 A ILE 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C PRO 262 A PRO 260 1_555 A N MSE 263 A MSE 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 263 A MSE 261 1_555 A N PHE 264 A PHE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B C LYS 83 B LYS 81 1_555 B N MSE 84 B MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 B C MSE 84 B MSE 82 1_555 B N SER 85 B SER 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C ASN 123 B ASN 121 1_555 B N MSE 124 B MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 B C MSE 124 B MSE 122 1_555 B N GLY 125 B GLY 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 B C GLN 140 B GLN 138 1_555 B N MSE 141 B MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 B C MSE 141 B MSE 139 1_555 B N PHE 142 B PHE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale19 B C GLN 196 B GLN 194 1_555 B N MSE 197 B MSE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 B C MSE 197 B MSE 195 1_555 B N ARG 198 B ARG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale21 B C LYS 199 B LYS 197 1_555 B N MSE 200 B MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 B C MSE 200 B MSE 198 1_555 B N ILE 201 B ILE 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale23 B C PRO 262 B PRO 260 1_555 B N MSE 263 B MSE 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale24 B C MSE 263 B MSE 261 1_555 B N PHE 264 B PHE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A ND1 HIS 23 A HIS 21 1_555 C ZN ZN . A ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc2 A OE2 GLU 26 A GLU 24 1_555 C ZN ZN . A ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc3 A OE1 GLU 26 A GLU 24 1_555 C ZN ZN . A ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc4 A ND1 HIS 118 A HIS 116 1_555 C ZN ZN . A ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc5 C ZN ZN . A ZN 314 1_555 D O2 PO4 . A PO4 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc6 B ND1 HIS 23 B HIS 21 1_555 H ZN ZN . B ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc7 B OE2 GLU 26 B GLU 24 1_555 H ZN ZN . B ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc8 B OE1 GLU 26 B GLU 24 1_555 H ZN ZN . B ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc9 B ND1 HIS 118 B HIS 116 1_555 H ZN ZN . B ZN 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc10 H ZN ZN . B ZN 314 1_555 I O3 PO4 . B PO4 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 279 n n P O2 PO4 sing 280 n n P O3 PO4 sing 281 n n P O4 PO4 sing 282 n n # _atom_sites.entry_id 2I3C _atom_sites.fract_transf_matrix[1][1] 0.00687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 314 101 ZN ZN . D 3 PO4 A 1 315 201 PO4 PO4 . E 3 PO4 A 1 316 202 PO4 PO4 . F 3 PO4 A 1 317 206 PO4 PO4 . G 3 PO4 A 1 318 208 PO4 PO4 . H 2 ZN B 1 314 102 ZN ZN . I 3 PO4 B 1 315 203 PO4 PO4 . J 3 PO4 B 1 316 204 PO4 PO4 . K 3 PO4 B 1 317 205 PO4 PO4 . L 3 PO4 B 1 318 207 PO4 PO4 . M 4 HOH A 1 319 3 HOH HOH . M 4 HOH A 2 320 4 HOH HOH . M 4 HOH A 3 321 6 HOH HOH . M 4 HOH A 4 322 12 HOH HOH . M 4 HOH A 5 323 17 HOH HOH . M 4 HOH A 6 324 19 HOH HOH . M 4 HOH A 7 325 21 HOH HOH . M 4 HOH A 8 326 25 HOH HOH . M 4 HOH A 9 327 28 HOH HOH . M 4 HOH A 10 328 30 HOH HOH . M 4 HOH A 11 329 31 HOH HOH . M 4 HOH A 12 330 32 HOH HOH . M 4 HOH A 13 331 33 HOH HOH . M 4 HOH A 14 332 35 HOH HOH . N 4 HOH B 1 319 1 HOH HOH . N 4 HOH B 2 320 2 HOH HOH . N 4 HOH B 3 321 5 HOH HOH . N 4 HOH B 4 322 7 HOH HOH . N 4 HOH B 5 323 8 HOH HOH . N 4 HOH B 6 324 9 HOH HOH . N 4 HOH B 7 325 10 HOH HOH . N 4 HOH B 8 326 11 HOH HOH . N 4 HOH B 9 327 13 HOH HOH . N 4 HOH B 10 328 14 HOH HOH . N 4 HOH B 11 329 15 HOH HOH . N 4 HOH B 12 330 16 HOH HOH . N 4 HOH B 13 331 18 HOH HOH . N 4 HOH B 14 332 20 HOH HOH . N 4 HOH B 15 333 22 HOH HOH . N 4 HOH B 16 334 23 HOH HOH . N 4 HOH B 17 335 24 HOH HOH . N 4 HOH B 18 336 26 HOH HOH . N 4 HOH B 19 337 27 HOH HOH . N 4 HOH B 20 338 29 HOH HOH . N 4 HOH B 21 339 34 HOH HOH . N 4 HOH B 22 340 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 -43.154 9.374 -40.026 1 62.93 ? P PO4 315 A 1 HETATM 2 O O1 PO4 . . . D 3 -41.881 8.643 -40.378 1 59.76 ? O1 PO4 315 A 1 HETATM 3 O O2 PO4 . . . D 3 -43.695 9.965 -41.313 1 54.2 ? O2 PO4 315 A 1 HETATM 4 O O3 PO4 . . . D 3 -44.155 8.393 -39.468 1 64.2 ? O3 PO4 315 A 1 HETATM 5 O O4 PO4 . . . D 3 -42.916 10.384 -38.926 1 49.3 ? O4 PO4 315 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #