data_2I3H # _model_server_result.job_id 61qB8LsQ1R5mvlpyXLSJcA _model_server_result.datetime_utc '2024-11-28 11:52:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1001}' # _entry.id 2I3H # _exptl.entry_id 2I3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I3H _cell.length_a 87.541 _cell.length_b 87.541 _cell.length_c 73.876 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 PISA hexameric 6 software_defined_assembly 5 PISA hexameric 6 software_defined_assembly 6 PISA trimeric 3 software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,K,M 1 1 B,D,F,G,H,I,J,L,N 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1,2 B,D,F,G,H,I,J,L,N 4 1 A,C,E,K,M 4 2 A,B,D,E,F,G,H,I,J,K,L,N 5 1,2 A,B,C,E,F,G,H,I,J,K,L,M 6 1,2 B,F,G,H,I,J,L 7 1 A,C,E,K,M 7 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 73.876 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 85 A CYS 124 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 A SG CYS 88 A CYS 127 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A NE2 HIS 105 A HIS 144 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 A SG CYS 112 A CYS 151 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 B O SER 54 B SER 93 1_555 G LI LI . B LI 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc6 B OD1 ASP 57 B ASP 96 1_555 G LI LI . B LI 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc7 B ND1 HIS 76 B HIS 115 1_555 G LI LI . B LI 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc8 B SG CYS 85 B CYS 124 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc9 B SG CYS 88 B CYS 127 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc10 B NE2 HIS 105 B HIS 144 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc11 B SG CYS 112 B CYS 151 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc12 I O2 EDO . B EDO 301 1_555 G LI LI . B LI 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2I3H _atom_sites.fract_transf_matrix[1][1] 0.011423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1001 1001 ZN ZN . F 3 ZN B 1 1001 1001 ZN ZN . G 4 LI B 1 1002 1002 LI LI . H 5 BTB B 1 401 1 BTB BTB . I 6 EDO B 1 301 101 EDO EDO . J 6 EDO B 1 302 102 EDO EDO . K 7 HOH A 1 1002 1 HOH HOH . K 7 HOH A 2 1003 3 HOH HOH . K 7 HOH A 3 1004 4 HOH HOH . K 7 HOH A 4 1005 6 HOH HOH . K 7 HOH A 5 1006 7 HOH HOH . K 7 HOH A 6 1007 8 HOH HOH . K 7 HOH A 7 1008 10 HOH HOH . K 7 HOH A 8 1009 12 HOH HOH . K 7 HOH A 9 1010 17 HOH HOH . K 7 HOH A 10 1011 20 HOH HOH . K 7 HOH A 11 1012 22 HOH HOH . K 7 HOH A 12 1013 23 HOH HOH . K 7 HOH A 13 1014 24 HOH HOH . K 7 HOH A 14 1015 25 HOH HOH . K 7 HOH A 15 1016 26 HOH HOH . K 7 HOH A 16 1017 27 HOH HOH . K 7 HOH A 17 1018 29 HOH HOH . K 7 HOH A 18 1019 30 HOH HOH . K 7 HOH A 19 1020 34 HOH HOH . K 7 HOH A 20 1021 37 HOH HOH . K 7 HOH A 21 1022 38 HOH HOH . K 7 HOH A 22 1023 39 HOH HOH . K 7 HOH A 23 1024 44 HOH HOH . K 7 HOH A 24 1025 46 HOH HOH . K 7 HOH A 25 1026 47 HOH HOH . K 7 HOH A 26 1027 48 HOH HOH . K 7 HOH A 27 1028 49 HOH HOH . K 7 HOH A 28 1029 52 HOH HOH . K 7 HOH A 29 1030 54 HOH HOH . K 7 HOH A 30 1031 56 HOH HOH . K 7 HOH A 31 1032 59 HOH HOH . K 7 HOH A 32 1033 61 HOH HOH . K 7 HOH A 33 1034 62 HOH HOH . K 7 HOH A 34 1035 65 HOH HOH . K 7 HOH A 35 1036 67 HOH HOH . K 7 HOH A 36 1037 68 HOH HOH . K 7 HOH A 37 1038 69 HOH HOH . K 7 HOH A 38 1039 70 HOH HOH . K 7 HOH A 39 1040 71 HOH HOH . K 7 HOH A 40 1041 72 HOH HOH . K 7 HOH A 41 1042 73 HOH HOH . K 7 HOH A 42 1043 80 HOH HOH . K 7 HOH A 43 1044 82 HOH HOH . K 7 HOH A 44 1045 86 HOH HOH . K 7 HOH A 45 1046 88 HOH HOH . K 7 HOH A 46 1047 89 HOH HOH . K 7 HOH A 47 1048 92 HOH HOH . K 7 HOH A 48 1049 100 HOH HOH . K 7 HOH A 49 1050 103 HOH HOH . K 7 HOH A 50 1051 104 HOH HOH . K 7 HOH A 51 1052 106 HOH HOH . K 7 HOH A 52 1053 107 HOH HOH . K 7 HOH A 53 1054 110 HOH HOH . K 7 HOH A 54 1055 111 HOH HOH . K 7 HOH A 55 1056 112 HOH HOH . K 7 HOH A 56 1057 114 HOH HOH . K 7 HOH A 57 1058 120 HOH HOH . K 7 HOH A 58 1059 123 HOH HOH . K 7 HOH A 59 1060 124 HOH HOH . K 7 HOH A 60 1061 126 HOH HOH . K 7 HOH A 61 1062 129 HOH HOH . K 7 HOH A 62 1063 130 HOH HOH . K 7 HOH A 63 1064 134 HOH HOH . K 7 HOH A 64 1065 135 HOH HOH . K 7 HOH A 65 1066 137 HOH HOH . K 7 HOH A 66 1067 139 HOH HOH . K 7 HOH A 67 1068 141 HOH HOH . K 7 HOH A 68 1069 142 HOH HOH . K 7 HOH A 69 1070 145 HOH HOH . K 7 HOH A 70 1071 150 HOH HOH . K 7 HOH A 71 1072 152 HOH HOH . K 7 HOH A 72 1073 154 HOH HOH . K 7 HOH A 73 1074 156 HOH HOH . K 7 HOH A 74 1075 157 HOH HOH . K 7 HOH A 75 1076 159 HOH HOH . K 7 HOH A 76 1077 160 HOH HOH . K 7 HOH A 77 1078 161 HOH HOH . K 7 HOH A 78 1079 164 HOH HOH . K 7 HOH A 79 1080 165 HOH HOH . K 7 HOH A 80 1081 166 HOH HOH . K 7 HOH A 81 1082 168 HOH HOH . K 7 HOH A 82 1083 173 HOH HOH . K 7 HOH A 83 1084 175 HOH HOH . K 7 HOH A 84 1085 178 HOH HOH . K 7 HOH A 85 1086 180 HOH HOH . K 7 HOH A 86 1087 184 HOH HOH . K 7 HOH A 87 1088 189 HOH HOH . K 7 HOH A 88 1089 196 HOH HOH . K 7 HOH A 89 1090 198 HOH HOH . K 7 HOH A 90 1091 200 HOH HOH . K 7 HOH A 91 1092 204 HOH HOH . K 7 HOH A 92 1093 205 HOH HOH . K 7 HOH A 93 1094 207 HOH HOH . K 7 HOH A 94 1095 211 HOH HOH . K 7 HOH A 95 1096 213 HOH HOH . K 7 HOH A 96 1097 214 HOH HOH . K 7 HOH A 97 1098 215 HOH HOH . K 7 HOH A 98 1099 216 HOH HOH . K 7 HOH A 99 1100 217 HOH HOH . K 7 HOH A 100 1101 218 HOH HOH . K 7 HOH A 101 1102 221 HOH HOH . K 7 HOH A 102 1103 222 HOH HOH . K 7 HOH A 103 1104 223 HOH HOH . K 7 HOH A 104 1105 229 HOH HOH . K 7 HOH A 105 1106 234 HOH HOH . K 7 HOH A 106 1107 240 HOH HOH . K 7 HOH A 107 1108 242 HOH HOH . K 7 HOH A 108 1109 243 HOH HOH . K 7 HOH A 109 1110 244 HOH HOH . K 7 HOH A 110 1111 245 HOH HOH . K 7 HOH A 111 1112 246 HOH HOH . K 7 HOH A 112 1113 248 HOH HOH . K 7 HOH A 113 1114 254 HOH HOH . K 7 HOH A 114 1115 256 HOH HOH . L 7 HOH B 1 1003 2 HOH HOH . L 7 HOH B 2 1004 5 HOH HOH . L 7 HOH B 3 1005 9 HOH HOH . L 7 HOH B 4 1006 11 HOH HOH . L 7 HOH B 5 1007 13 HOH HOH . L 7 HOH B 6 1008 14 HOH HOH . L 7 HOH B 7 1009 16 HOH HOH . L 7 HOH B 8 1010 18 HOH HOH . L 7 HOH B 9 1011 19 HOH HOH . L 7 HOH B 10 1012 28 HOH HOH . L 7 HOH B 11 1013 31 HOH HOH . L 7 HOH B 12 1014 32 HOH HOH . L 7 HOH B 13 1015 35 HOH HOH . L 7 HOH B 14 1016 36 HOH HOH . L 7 HOH B 15 1017 40 HOH HOH . L 7 HOH B 16 1018 42 HOH HOH . L 7 HOH B 17 1019 43 HOH HOH . L 7 HOH B 18 1020 45 HOH HOH . L 7 HOH B 19 1021 50 HOH HOH . L 7 HOH B 20 1022 53 HOH HOH . L 7 HOH B 21 1023 55 HOH HOH . L 7 HOH B 22 1024 57 HOH HOH . L 7 HOH B 23 1025 58 HOH HOH . L 7 HOH B 24 1026 60 HOH HOH . L 7 HOH B 25 1027 63 HOH HOH . L 7 HOH B 26 1028 64 HOH HOH . L 7 HOH B 27 1029 66 HOH HOH . L 7 HOH B 28 1030 74 HOH HOH . L 7 HOH B 29 1031 75 HOH HOH . L 7 HOH B 30 1032 76 HOH HOH . L 7 HOH B 31 1033 77 HOH HOH . L 7 HOH B 32 1034 78 HOH HOH . L 7 HOH B 33 1035 79 HOH HOH . L 7 HOH B 34 1036 81 HOH HOH . L 7 HOH B 35 1037 83 HOH HOH . L 7 HOH B 36 1038 84 HOH HOH . L 7 HOH B 37 1039 85 HOH HOH . L 7 HOH B 38 1040 87 HOH HOH . L 7 HOH B 39 1041 90 HOH HOH . L 7 HOH B 40 1042 91 HOH HOH . L 7 HOH B 41 1043 93 HOH HOH . L 7 HOH B 42 1044 94 HOH HOH . L 7 HOH B 43 1045 95 HOH HOH . L 7 HOH B 44 1046 96 HOH HOH . L 7 HOH B 45 1047 97 HOH HOH . L 7 HOH B 46 1048 98 HOH HOH . L 7 HOH B 47 1049 99 HOH HOH . L 7 HOH B 48 1050 101 HOH HOH . L 7 HOH B 49 1051 102 HOH HOH . L 7 HOH B 50 1052 105 HOH HOH . L 7 HOH B 51 1053 108 HOH HOH . L 7 HOH B 52 1054 113 HOH HOH . L 7 HOH B 53 1055 115 HOH HOH . L 7 HOH B 54 1056 116 HOH HOH . L 7 HOH B 55 1057 117 HOH HOH . L 7 HOH B 56 1058 118 HOH HOH . L 7 HOH B 57 1059 119 HOH HOH . L 7 HOH B 58 1060 121 HOH HOH . L 7 HOH B 59 1061 122 HOH HOH . L 7 HOH B 60 1062 125 HOH HOH . L 7 HOH B 61 1063 127 HOH HOH . L 7 HOH B 62 1064 128 HOH HOH . L 7 HOH B 63 1065 132 HOH HOH . L 7 HOH B 64 1066 133 HOH HOH . L 7 HOH B 65 1067 138 HOH HOH . L 7 HOH B 66 1068 143 HOH HOH . L 7 HOH B 67 1069 144 HOH HOH . L 7 HOH B 68 1070 146 HOH HOH . L 7 HOH B 69 1071 147 HOH HOH . L 7 HOH B 70 1072 148 HOH HOH . L 7 HOH B 71 1073 149 HOH HOH . L 7 HOH B 72 1074 151 HOH HOH . L 7 HOH B 73 1075 153 HOH HOH . L 7 HOH B 74 1076 155 HOH HOH . L 7 HOH B 75 1077 158 HOH HOH . L 7 HOH B 76 1078 162 HOH HOH . L 7 HOH B 77 1079 163 HOH HOH . L 7 HOH B 78 1080 167 HOH HOH . L 7 HOH B 79 1081 174 HOH HOH . L 7 HOH B 80 1082 177 HOH HOH . L 7 HOH B 81 1083 179 HOH HOH . L 7 HOH B 82 1084 181 HOH HOH . L 7 HOH B 83 1085 182 HOH HOH . L 7 HOH B 84 1086 185 HOH HOH . L 7 HOH B 85 1087 187 HOH HOH . L 7 HOH B 86 1088 190 HOH HOH . L 7 HOH B 87 1089 191 HOH HOH . L 7 HOH B 88 1090 192 HOH HOH . L 7 HOH B 89 1091 199 HOH HOH . L 7 HOH B 90 1092 201 HOH HOH . L 7 HOH B 91 1093 202 HOH HOH . L 7 HOH B 92 1094 208 HOH HOH . L 7 HOH B 93 1095 209 HOH HOH . L 7 HOH B 94 1096 210 HOH HOH . L 7 HOH B 95 1097 212 HOH HOH . L 7 HOH B 96 1098 219 HOH HOH . L 7 HOH B 97 1099 224 HOH HOH . L 7 HOH B 98 1100 225 HOH HOH . L 7 HOH B 99 1101 226 HOH HOH . L 7 HOH B 100 1102 227 HOH HOH . L 7 HOH B 101 1103 235 HOH HOH . L 7 HOH B 102 1104 237 HOH HOH . L 7 HOH B 103 1105 238 HOH HOH . L 7 HOH B 104 1106 239 HOH HOH . L 7 HOH B 105 1107 241 HOH HOH . L 7 HOH B 106 1108 247 HOH HOH . L 7 HOH B 107 1109 249 HOH HOH . L 7 HOH B 108 1110 250 HOH HOH . L 7 HOH B 109 1111 251 HOH HOH . L 7 HOH B 110 1112 255 HOH HOH . M 7 HOH C 1 33 33 HOH HOH . M 7 HOH C 2 169 169 HOH HOH . M 7 HOH C 3 203 203 HOH HOH . N 7 HOH D 1 21 21 HOH HOH . N 7 HOH D 2 41 41 HOH HOH . N 7 HOH D 3 172 172 HOH HOH . N 7 HOH D 4 195 195 HOH HOH . N 7 HOH D 5 236 236 HOH HOH . N 7 HOH D 6 253 253 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 81.897 _atom_site.Cartn_y 54.32 _atom_site.Cartn_z 49.668 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #