data_2I3Y # _model_server_result.job_id o00U_j69bAHngo0amXc30Q _model_server_result.datetime_utc '2025-03-04 15:04:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":221}' # _entry.id 2I3Y # _exptl.entry_id 2I3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2I3Y _cell.length_a 104.544 _cell.length_b 104.544 _cell.length_c 71.663 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 104.544 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 104.544 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2I3Y _atom_sites.fract_transf_matrix[1][1] 0.009565 _atom_sites.fract_transf_matrix[1][2] 0.005523 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 221 1 EDO EDO . C 3 HOH A 1 222 1 HOH HOH . C 3 HOH A 2 223 2 HOH HOH . C 3 HOH A 3 224 3 HOH HOH . C 3 HOH A 4 225 4 HOH HOH . C 3 HOH A 5 226 5 HOH HOH . C 3 HOH A 6 227 6 HOH HOH . C 3 HOH A 7 228 7 HOH HOH . C 3 HOH A 8 229 8 HOH HOH . C 3 HOH A 9 230 9 HOH HOH . C 3 HOH A 10 231 10 HOH HOH . C 3 HOH A 11 232 11 HOH HOH . C 3 HOH A 12 233 12 HOH HOH . C 3 HOH A 13 234 13 HOH HOH . C 3 HOH A 14 235 14 HOH HOH . C 3 HOH A 15 236 15 HOH HOH . C 3 HOH A 16 237 16 HOH HOH . C 3 HOH A 17 238 17 HOH HOH . C 3 HOH A 18 239 18 HOH HOH . C 3 HOH A 19 240 19 HOH HOH . C 3 HOH A 20 241 21 HOH HOH . C 3 HOH A 21 242 22 HOH HOH . C 3 HOH A 22 243 23 HOH HOH . C 3 HOH A 23 244 24 HOH HOH . C 3 HOH A 24 245 25 HOH HOH . C 3 HOH A 25 246 26 HOH HOH . C 3 HOH A 26 247 27 HOH HOH . C 3 HOH A 27 248 28 HOH HOH . C 3 HOH A 28 249 29 HOH HOH . C 3 HOH A 29 250 32 HOH HOH . C 3 HOH A 30 251 33 HOH HOH . C 3 HOH A 31 252 34 HOH HOH . C 3 HOH A 32 253 35 HOH HOH . C 3 HOH A 33 254 36 HOH HOH . C 3 HOH A 34 255 38 HOH HOH . C 3 HOH A 35 256 39 HOH HOH . C 3 HOH A 36 257 41 HOH HOH . C 3 HOH A 37 258 43 HOH HOH . C 3 HOH A 38 259 44 HOH HOH . C 3 HOH A 39 260 45 HOH HOH . C 3 HOH A 40 261 46 HOH HOH . C 3 HOH A 41 262 47 HOH HOH . C 3 HOH A 42 263 48 HOH HOH . C 3 HOH A 43 264 49 HOH HOH . C 3 HOH A 44 265 50 HOH HOH . C 3 HOH A 45 266 52 HOH HOH . C 3 HOH A 46 267 54 HOH HOH . C 3 HOH A 47 268 55 HOH HOH . C 3 HOH A 48 269 56 HOH HOH . C 3 HOH A 49 270 57 HOH HOH . C 3 HOH A 50 271 58 HOH HOH . C 3 HOH A 51 272 59 HOH HOH . C 3 HOH A 52 273 60 HOH HOH . C 3 HOH A 53 274 63 HOH HOH . C 3 HOH A 54 275 66 HOH HOH . C 3 HOH A 55 276 67 HOH HOH . C 3 HOH A 56 277 69 HOH HOH . C 3 HOH A 57 278 72 HOH HOH . C 3 HOH A 58 279 73 HOH HOH . C 3 HOH A 59 280 77 HOH HOH . C 3 HOH A 60 281 78 HOH HOH . C 3 HOH A 61 282 80 HOH HOH . C 3 HOH A 62 283 81 HOH HOH . C 3 HOH A 63 284 83 HOH HOH . C 3 HOH A 64 285 84 HOH HOH . C 3 HOH A 65 286 86 HOH HOH . C 3 HOH A 66 287 89 HOH HOH . C 3 HOH A 67 288 92 HOH HOH . C 3 HOH A 68 289 93 HOH HOH . C 3 HOH A 69 290 97 HOH HOH . C 3 HOH A 70 291 102 HOH HOH . C 3 HOH A 71 292 124 HOH HOH . C 3 HOH A 72 293 125 HOH HOH . C 3 HOH A 73 294 126 HOH HOH . C 3 HOH A 74 295 128 HOH HOH . C 3 HOH A 75 296 130 HOH HOH . C 3 HOH A 76 297 131 HOH HOH . C 3 HOH A 77 298 132 HOH HOH . C 3 HOH A 78 299 133 HOH HOH . C 3 HOH A 79 300 134 HOH HOH . C 3 HOH A 80 301 135 HOH HOH . C 3 HOH A 81 302 136 HOH HOH . C 3 HOH A 82 303 137 HOH HOH . C 3 HOH A 83 304 138 HOH HOH . C 3 HOH A 84 305 139 HOH HOH . C 3 HOH A 85 306 140 HOH HOH . C 3 HOH A 86 307 141 HOH HOH . C 3 HOH A 87 308 142 HOH HOH . C 3 HOH A 88 309 143 HOH HOH . C 3 HOH A 89 310 144 HOH HOH . C 3 HOH A 90 311 145 HOH HOH . C 3 HOH A 91 312 147 HOH HOH . C 3 HOH A 92 313 148 HOH HOH . C 3 HOH A 93 314 149 HOH HOH . C 3 HOH A 94 315 150 HOH HOH . C 3 HOH A 95 316 151 HOH HOH . C 3 HOH A 96 317 152 HOH HOH . C 3 HOH A 97 318 153 HOH HOH . C 3 HOH A 98 319 154 HOH HOH . C 3 HOH A 99 320 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 60.857 11.805 -6.771 1 60.99 ? C1 EDO 221 A 1 HETATM 2 O O1 EDO . . . B 2 60.577 12.934 -5.926 1 58.57 ? O1 EDO 221 A 1 HETATM 3 C C2 EDO . . . B 2 62.227 11.916 -7.437 1 62.44 ? C2 EDO 221 A 1 HETATM 4 O O2 EDO . . . B 2 62.752 10.607 -7.737 1 64.69 ? O2 EDO 221 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #