data_2I4M
#
_model_server_result.job_id            6nLgWl0skfDpP6fo8Twg4g 
_model_server_result.datetime_utc      '2024-11-27 19:36:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2i4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":439}' 
#
_entry.id    2I4M 
#
_exptl.entry_id    2I4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.435 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "'5'-O-(N-(L-PROLYL)-SULFAMOYL)ADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2I4M 
_cell.length_a            110.36 
_cell.length_b            211.9 
_cell.length_c            150.2 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2I4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,F,G 1 1 
C,E,H 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 110.36 0 75.1 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C15 H21 N7 O7 S' 
_chem_comp.formula_weight    443.435 
_chem_comp.id                P5A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "'5'-O-(N-(L-PROLYL)-SULFAMOYL)ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CB CG P5A sing 237 n n 
CB CA P5A sing 238 n n 
CB HB1 P5A sing 239 n n 
CB HB2 P5A sing 240 n n 
CG CD P5A sing 241 n n 
CG HG1 P5A sing 242 n n 
CG HG2 P5A sing 243 n n 
C O P5A doub 244 n n 
C CA P5A sing 245 n n 
C N3S P5A sing 246 n n 
N CD P5A sing 247 n n 
N CA P5A sing 248 n n 
N HT1 P5A sing 249 n n 
CD HD1 P5A sing 250 n n 
CD HD2 P5A sing 251 n n 
CA HA P5A sing 252 n n 
N3S S P5A sing 253 n n 
N3S H3S P5A sing 254 n n 
S O1S P5A doub 255 n n 
S O2S P5A doub 256 n n 
S O5' P5A sing 257 n n 
O5' C5' P5A sing 258 n n 
C5' C4' P5A sing 259 n n 
C5' "H1'1" P5A sing 260 n n 
C5' "H1'2" P5A sing 261 n n 
C4' O4' P5A sing 262 n n 
C4' C3' P5A sing 263 n n 
C4' H4' P5A sing 264 n n 
O4' C1' P5A sing 265 n n 
C1' N9 P5A sing 266 n n 
C1' C2' P5A sing 267 n n 
C1' H1' P5A sing 268 n n 
N9 C4 P5A sing 269 n y 
N9 C8 P5A sing 270 n y 
C4 N3 P5A doub 271 n y 
C4 C5 P5A sing 272 n y 
N3 C2 P5A sing 273 n y 
C2 N1 P5A doub 274 n y 
C2 H2 P5A sing 275 n n 
N1 C6 P5A sing 276 n y 
C6 N6 P5A sing 277 n n 
C6 C5 P5A doub 278 n y 
N6 H61 P5A sing 279 n n 
N6 H62 P5A sing 280 n n 
C5 N7 P5A sing 281 n y 
N7 C8 P5A doub 282 n y 
C8 H8 P5A sing 283 n n 
C2' O2' P5A sing 284 n n 
C2' C3' P5A sing 285 n n 
C2' H2' P5A sing 286 n n 
O2' "HO'2" P5A sing 287 n n 
C3' O3' P5A sing 288 n n 
C3' H3' P5A sing 289 n n 
O3' H3T P5A sing 290 n n 
#
_atom_sites.entry_id                     2I4M 
_atom_sites.fract_transf_matrix[1][1]    0.009061 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004719 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006658 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 P5A B 1 439 102 P5A PSD . 
E 2 P5A C 1 439 103 P5A PSD . 
F 3 HOH A 1 439 1 HOH HOH . 
F 3 HOH A 2 440 2 HOH HOH . 
F 3 HOH A 3 441 4 HOH HOH . 
F 3 HOH A 4 442 7 HOH HOH . 
F 3 HOH A 5 443 10 HOH HOH . 
F 3 HOH A 6 444 11 HOH HOH . 
F 3 HOH A 7 445 13 HOH HOH . 
F 3 HOH A 8 446 14 HOH HOH . 
F 3 HOH A 9 447 15 HOH HOH . 
F 3 HOH A 10 448 22 HOH HOH . 
F 3 HOH A 11 449 25 HOH HOH . 
F 3 HOH A 12 450 26 HOH HOH . 
F 3 HOH A 13 451 38 HOH HOH . 
F 3 HOH A 14 452 39 HOH HOH . 
F 3 HOH A 15 453 40 HOH HOH . 
F 3 HOH A 16 454 41 HOH HOH . 
F 3 HOH A 17 455 43 HOH HOH . 
F 3 HOH A 18 456 44 HOH HOH . 
F 3 HOH A 19 457 46 HOH HOH . 
F 3 HOH A 20 458 48 HOH HOH . 
G 3 HOH B 1 440 17 HOH HOH . 
G 3 HOH B 2 441 3 HOH HOH . 
G 3 HOH B 3 442 5 HOH HOH . 
G 3 HOH B 4 443 6 HOH HOH . 
G 3 HOH B 5 444 8 HOH HOH . 
G 3 HOH B 6 445 9 HOH HOH . 
G 3 HOH B 7 446 12 HOH HOH . 
G 3 HOH B 8 447 16 HOH HOH . 
G 3 HOH B 9 448 18 HOH HOH . 
G 3 HOH B 10 449 19 HOH HOH . 
G 3 HOH B 11 450 20 HOH HOH . 
G 3 HOH B 12 451 21 HOH HOH . 
G 3 HOH B 13 452 23 HOH HOH . 
G 3 HOH B 14 453 24 HOH HOH . 
G 3 HOH B 15 454 27 HOH HOH . 
G 3 HOH B 16 455 28 HOH HOH . 
G 3 HOH B 17 456 32 HOH HOH . 
G 3 HOH B 18 457 42 HOH HOH . 
G 3 HOH B 19 458 45 HOH HOH . 
G 3 HOH B 20 459 49 HOH HOH . 
G 3 HOH B 21 460 50 HOH HOH . 
G 3 HOH B 22 461 52 HOH HOH . 
H 3 HOH C 1 440 29 HOH HOH . 
H 3 HOH C 2 441 30 HOH HOH . 
H 3 HOH C 3 442 31 HOH HOH . 
H 3 HOH C 4 443 33 HOH HOH . 
H 3 HOH C 5 444 34 HOH HOH . 
H 3 HOH C 6 445 35 HOH HOH . 
H 3 HOH C 7 446 36 HOH HOH . 
H 3 HOH C 8 447 37 HOH HOH . 
H 3 HOH C 9 448 47 HOH HOH . 
H 3 HOH C 10 449 51 HOH HOH . 
H 3 HOH C 11 450 53 HOH HOH . 
H 3 HOH C 12 451 54 HOH HOH . 
H 3 HOH C 13 452 55 HOH HOH . 
H 3 HOH C 14 453 56 HOH HOH . 
H 3 HOH C 15 454 57 HOH HOH . 
H 3 HOH C 16 455 58 HOH HOH . 
H 3 HOH C 17 456 59 HOH HOH . 
H 3 HOH C 18 457 60 HOH HOH . 
H 3 HOH C 19 458 61 HOH HOH . 
H 3 HOH C 20 459 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CB P5A . . . E 2 37.638 102.131 39.464 0.5 28.25 ? CB P5A 439 C 1 
HETATM 2 C CG P5A . . . E 2 38.838 102.988 39.784 0.5 28.14 ? CG P5A 439 C 1 
HETATM 3 C C P5A . . . E 2 38.322 100.294 38.05 0.5 28.65 ? C P5A 439 C 1 
HETATM 4 O O P5A . . . E 2 39.146 99.463 37.692 0.5 28.48 ? O P5A 439 C 1 
HETATM 5 N N P5A . . . E 2 39.396 100.722 40.179 0.5 28.29 ? N P5A 439 C 1 
HETATM 6 C CD P5A . . . E 2 39.833 102.064 40.456 0.5 28.4 ? CD P5A 439 C 1 
HETATM 7 C CA P5A . . . E 2 38.147 100.698 39.474 0.5 28.5 ? CA P5A 439 C 1 
HETATM 8 N N3S P5A . . . E 2 37.501 100.946 37.241 0.5 28.82 ? N3S P5A 439 C 1 
HETATM 9 S S P5A . . . E 2 37.524 100.663 35.619 0.5 28.47 ? S P5A 439 C 1 
HETATM 10 O O1S P5A . . . E 2 37.753 99.177 35.485 0.5 28.98 ? O1S P5A 439 C 1 
HETATM 11 O O2S P5A . . . E 2 36.286 101.289 35.025 0.5 27.92 ? O2S P5A 439 C 1 
HETATM 12 O O5' P5A . . . E 2 38.808 101.465 35.064 0.5 28.38 ? O5' P5A 439 C 1 
HETATM 13 C C5' P5A . . . E 2 38.851 102.895 35.108 0.5 26.36 ? C5' P5A 439 C 1 
HETATM 14 C C4' P5A . . . E 2 39.422 103.503 33.822 0.5 25.69 ? C4' P5A 439 C 1 
HETATM 15 O O4' P5A . . . E 2 40.71 102.982 33.409 0.5 25.73 ? O4' P5A 439 C 1 
HETATM 16 C C1' P5A . . . E 2 40.752 102.849 31.971 0.5 24.91 ? C1' P5A 439 C 1 
HETATM 17 N N9 P5A . . . E 2 41.033 101.446 31.571 0.5 25.33 ? N9 P5A 439 C 1 
HETATM 18 C C4 P5A . . . E 2 41.913 101.086 30.627 0.5 26.24 ? C4 P5A 439 C 1 
HETATM 19 N N3 P5A . . . E 2 42.739 101.806 29.82 0.5 25.97 ? N3 P5A 439 C 1 
HETATM 20 C C2 P5A . . . E 2 43.534 101.18 28.927 0.5 25.4 ? C2 P5A 439 C 1 
HETATM 21 N N1 P5A . . . E 2 43.559 99.847 28.811 0.5 24.82 ? N1 P5A 439 C 1 
HETATM 22 C C6 P5A . . . E 2 42.768 99.08 29.603 0.5 25.6 ? C6 P5A 439 C 1 
HETATM 23 N N6 P5A . . . E 2 42.82 97.728 29.447 0.5 25.56 ? N6 P5A 439 C 1 
HETATM 24 C C5 P5A . . . E 2 41.918 99.693 30.539 0.5 25.67 ? C5 P5A 439 C 1 
HETATM 25 N N7 P5A . . . E 2 41.022 99.254 31.451 0.5 24.87 ? N7 P5A 439 C 1 
HETATM 26 C C8 P5A . . . E 2 40.477 100.327 32.075 0.5 24.38 ? C8 P5A 439 C 1 
HETATM 27 C C2' P5A . . . E 2 39.379 103.216 31.437 0.5 24.56 ? C2' P5A 439 C 1 
HETATM 28 O O2' P5A . . . E 2 39.414 104.473 30.767 0.5 22.57 ? O2' P5A 439 C 1 
HETATM 29 C C3' P5A . . . E 2 38.482 103.265 32.66 0.5 24.2 ? C3' P5A 439 C 1 
HETATM 30 O O3' P5A . . . E 2 37.528 104.309 32.591 0.5 23.31 ? O3' P5A 439 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#