data_2I4N # _model_server_result.job_id L6YrjBYFNNXNQ31I9TTOlw _model_server_result.datetime_utc '2024-11-14 09:56:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i4n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":439}' # _entry.id 2I4N # _exptl.entry_id 2I4N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 449.463 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.43 _cell.angle_gamma 90 _cell.entry_id 2I4N _cell.length_a 217.9 _cell.length_b 107.47 _cell.length_c 110.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I4N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,G,H 1 1 C,F,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 56.047664 0 -95.416429 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C13 H19 N7 O7 S2' _chem_comp.formula_weight 449.463 _chem_comp.id 5CA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 5CA sing 1 n n N H 5CA sing 2 n n N HN2 5CA sing 3 n n CA CB 5CA sing 4 n n CA C 5CA sing 5 n n CA HA 5CA sing 6 n n CB SG 5CA sing 7 n n CB HB1 5CA sing 8 n n CB HB2 5CA sing 9 n n SG HG 5CA sing 10 n n C O 5CA doub 11 n n C N3S 5CA sing 12 n n N3S S 5CA sing 13 n n N3S H3S 5CA sing 14 n n S O1S 5CA doub 15 n n S O2S 5CA doub 16 n n S O5' 5CA sing 17 n n O5' C5' 5CA sing 18 n n C5' C4' 5CA sing 19 n n C5' "H5'1" 5CA sing 20 n n C5' "H5'2" 5CA sing 21 n n C4' O4' 5CA sing 22 n n C4' C3' 5CA sing 23 n n C4' H4' 5CA sing 24 n n O4' C1' 5CA sing 25 n n C3' O3' 5CA sing 26 n n C3' C2' 5CA sing 27 n n C3' H3' 5CA sing 28 n n O3' H3T 5CA sing 29 n n C2' O2' 5CA sing 30 n n C2' C1' 5CA sing 31 n n C2' H2' 5CA sing 32 n n O2' "HO'2" 5CA sing 33 n n C1' N9 5CA sing 34 n n C1' H1' 5CA sing 35 n n N9 C8 5CA sing 36 n y N9 C4 5CA sing 37 n y C8 N7 5CA doub 38 n y C8 H8 5CA sing 39 n n N7 C5 5CA sing 40 n y C5 C6 5CA doub 41 n y C5 C4 5CA sing 42 n y C6 N6 5CA sing 43 n n C6 N1 5CA sing 44 n y N6 H61 5CA sing 45 n n N6 H62 5CA sing 46 n n N1 C2 5CA doub 47 n y C2 N3 5CA sing 48 n y C2 H2 5CA sing 49 n n N3 C4 5CA doub 50 n y # _atom_sites.entry_id 2I4N _atom_sites.fract_transf_matrix[1][1] 0.004589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002696 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 5CA A 1 439 101 5CA 5CA . E 2 5CA B 1 439 102 5CA 5CA . F 2 5CA C 1 439 103 5CA 5CA . G 3 HOH A 1 440 8 HOH HOH . G 3 HOH A 2 441 9 HOH HOH . G 3 HOH A 3 442 10 HOH HOH . G 3 HOH A 4 443 11 HOH HOH . G 3 HOH A 5 444 14 HOH HOH . G 3 HOH A 6 445 19 HOH HOH . G 3 HOH A 7 446 21 HOH HOH . G 3 HOH A 8 447 22 HOH HOH . G 3 HOH A 9 448 24 HOH HOH . G 3 HOH A 10 449 33 HOH HOH . G 3 HOH A 11 450 34 HOH HOH . G 3 HOH A 12 451 35 HOH HOH . G 3 HOH A 13 452 46 HOH HOH . G 3 HOH A 14 453 47 HOH HOH . G 3 HOH A 15 454 49 HOH HOH . G 3 HOH A 16 455 50 HOH HOH . G 3 HOH A 17 456 51 HOH HOH . G 3 HOH A 18 457 52 HOH HOH . G 3 HOH A 19 458 53 HOH HOH . G 3 HOH A 20 459 54 HOH HOH . G 3 HOH A 21 460 56 HOH HOH . G 3 HOH A 22 461 57 HOH HOH . G 3 HOH A 23 462 66 HOH HOH . G 3 HOH A 24 463 68 HOH HOH . G 3 HOH A 25 464 69 HOH HOH . G 3 HOH A 26 465 70 HOH HOH . G 3 HOH A 27 466 74 HOH HOH . G 3 HOH A 28 467 75 HOH HOH . H 3 HOH B 1 440 12 HOH HOH . H 3 HOH B 2 441 13 HOH HOH . H 3 HOH B 3 442 15 HOH HOH . H 3 HOH B 4 443 16 HOH HOH . H 3 HOH B 5 444 17 HOH HOH . H 3 HOH B 6 445 18 HOH HOH . H 3 HOH B 7 446 20 HOH HOH . H 3 HOH B 8 447 23 HOH HOH . H 3 HOH B 9 448 25 HOH HOH . H 3 HOH B 10 449 26 HOH HOH . H 3 HOH B 11 450 27 HOH HOH . H 3 HOH B 12 451 28 HOH HOH . H 3 HOH B 13 452 29 HOH HOH . H 3 HOH B 14 453 30 HOH HOH . H 3 HOH B 15 454 31 HOH HOH . H 3 HOH B 16 455 32 HOH HOH . H 3 HOH B 17 456 48 HOH HOH . H 3 HOH B 18 457 55 HOH HOH . H 3 HOH B 19 458 58 HOH HOH . H 3 HOH B 20 459 59 HOH HOH . H 3 HOH B 21 460 60 HOH HOH . H 3 HOH B 22 461 61 HOH HOH . H 3 HOH B 23 462 62 HOH HOH . H 3 HOH B 24 463 63 HOH HOH . H 3 HOH B 25 464 64 HOH HOH . H 3 HOH B 26 465 65 HOH HOH . H 3 HOH B 27 466 67 HOH HOH . H 3 HOH B 28 467 71 HOH HOH . H 3 HOH B 29 468 72 HOH HOH . H 3 HOH B 30 469 73 HOH HOH . I 3 HOH C 1 440 1 HOH HOH . I 3 HOH C 2 441 2 HOH HOH . I 3 HOH C 3 442 3 HOH HOH . I 3 HOH C 4 443 4 HOH HOH . I 3 HOH C 5 444 5 HOH HOH . I 3 HOH C 6 445 6 HOH HOH . I 3 HOH C 7 446 7 HOH HOH . I 3 HOH C 8 447 36 HOH HOH . I 3 HOH C 9 448 37 HOH HOH . I 3 HOH C 10 449 38 HOH HOH . I 3 HOH C 11 450 39 HOH HOH . I 3 HOH C 12 451 40 HOH HOH . I 3 HOH C 13 452 41 HOH HOH . I 3 HOH C 14 453 42 HOH HOH . I 3 HOH C 15 454 43 HOH HOH . I 3 HOH C 16 455 44 HOH HOH . I 3 HOH C 17 456 45 HOH HOH . I 3 HOH C 18 457 76 HOH HOH . I 3 HOH C 19 458 79 HOH HOH . I 3 HOH C 20 459 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 5CA . . . D 2 78.629 -2.603 23.245 1 50 ? N 5CA 439 A 1 HETATM 2 C CA 5CA . . . D 2 77.387 -3.125 22.739 1 49.98 ? CA 5CA 439 A 1 HETATM 3 C CB 5CA . . . D 2 77.496 -2.566 21.36 1 49.79 ? CB 5CA 439 A 1 HETATM 4 S SG 5CA . . . D 2 76.453 -1.146 21.434 1 51.94 ? SG 5CA 439 A 1 HETATM 5 C C 5CA . . . D 2 77.355 -4.607 22.527 1 49.86 ? C 5CA 439 A 1 HETATM 6 O O 5CA . . . D 2 78.364 -5.177 22.12 1 49.21 ? O 5CA 439 A 1 HETATM 7 N N3S 5CA . . . D 2 76.179 -5.226 22.757 1 49.85 ? N3S 5CA 439 A 1 HETATM 8 S S 5CA . . . D 2 75.935 -6.745 22.523 1 50.63 ? S 5CA 439 A 1 HETATM 9 O O1S 5CA . . . D 2 77.185 -7.54 22.699 1 48.57 ? O1S 5CA 439 A 1 HETATM 10 O O2S 5CA . . . D 2 74.789 -7.183 23.376 1 49.81 ? O2S 5CA 439 A 1 HETATM 11 O O5' 5CA . . . D 2 75.543 -7.06 20.967 1 48.49 ? O5' 5CA 439 A 1 HETATM 12 C C5' 5CA . . . D 2 74.514 -6.309 20.353 1 46.86 ? C5' 5CA 439 A 1 HETATM 13 C C4' 5CA . . . D 2 73.742 -7.237 19.443 1 46.7 ? C4' 5CA 439 A 1 HETATM 14 O O4' 5CA . . . D 2 74.613 -7.847 18.508 1 46.63 ? O4' 5CA 439 A 1 HETATM 15 C C3' 5CA . . . D 2 73.147 -8.391 20.2 1 47.12 ? C3' 5CA 439 A 1 HETATM 16 O O3' 5CA . . . D 2 71.905 -8.009 20.803 1 47.74 ? O3' 5CA 439 A 1 HETATM 17 C C2' 5CA . . . D 2 73.058 -9.468 19.132 1 47.19 ? C2' 5CA 439 A 1 HETATM 18 O O2' 5CA . . . D 2 71.789 -9.538 18.478 1 49.6 ? O2' 5CA 439 A 1 HETATM 19 C C1' 5CA . . . D 2 74.115 -9.108 18.12 1 47.05 ? C1' 5CA 439 A 1 HETATM 20 N N9 5CA . . . D 2 75.188 -10.093 18.294 1 47.95 ? N9 5CA 439 A 1 HETATM 21 C C8 5CA . . . D 2 75.944 -10.253 19.39 1 47.94 ? C8 5CA 439 A 1 HETATM 22 N N7 5CA . . . D 2 76.812 -11.273 19.184 1 48.47 ? N7 5CA 439 A 1 HETATM 23 C C5 5CA . . . D 2 76.582 -11.756 17.947 1 49.23 ? C5 5CA 439 A 1 HETATM 24 C C6 5CA . . . D 2 77.168 -12.846 17.119 1 48.79 ? C6 5CA 439 A 1 HETATM 25 N N6 5CA . . . D 2 78.178 -13.614 17.6 1 48.58 ? N6 5CA 439 A 1 HETATM 26 N N1 5CA . . . D 2 76.682 -13.046 15.867 1 48.23 ? N1 5CA 439 A 1 HETATM 27 C C2 5CA . . . D 2 75.687 -12.286 15.395 1 47.95 ? C2 5CA 439 A 1 HETATM 28 N N3 5CA . . . D 2 75.138 -11.302 16.125 1 49.1 ? N3 5CA 439 A 1 HETATM 29 C C4 5CA . . . D 2 75.558 -11.008 17.388 1 49.41 ? C4 5CA 439 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #