data_2I4N # _model_server_result.job_id 4Ub2Nzh0ryA9Z7XsHL8OyA _model_server_result.datetime_utc '2024-11-30 17:58:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i4n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":439}' # _entry.id 2I4N # _exptl.entry_id 2I4N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 449.463 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.43 _cell.angle_gamma 90 _cell.entry_id 2I4N _cell.length_a 217.9 _cell.length_b 107.47 _cell.length_c 110.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I4N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,G,H 1 1 C,F,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 56.047664 0 -95.416429 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C13 H19 N7 O7 S2' _chem_comp.formula_weight 449.463 _chem_comp.id 5CA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 5CA sing 1 n n N H 5CA sing 2 n n N HN2 5CA sing 3 n n CA CB 5CA sing 4 n n CA C 5CA sing 5 n n CA HA 5CA sing 6 n n CB SG 5CA sing 7 n n CB HB1 5CA sing 8 n n CB HB2 5CA sing 9 n n SG HG 5CA sing 10 n n C O 5CA doub 11 n n C N3S 5CA sing 12 n n N3S S 5CA sing 13 n n N3S H3S 5CA sing 14 n n S O1S 5CA doub 15 n n S O2S 5CA doub 16 n n S O5' 5CA sing 17 n n O5' C5' 5CA sing 18 n n C5' C4' 5CA sing 19 n n C5' "H5'1" 5CA sing 20 n n C5' "H5'2" 5CA sing 21 n n C4' O4' 5CA sing 22 n n C4' C3' 5CA sing 23 n n C4' H4' 5CA sing 24 n n O4' C1' 5CA sing 25 n n C3' O3' 5CA sing 26 n n C3' C2' 5CA sing 27 n n C3' H3' 5CA sing 28 n n O3' H3T 5CA sing 29 n n C2' O2' 5CA sing 30 n n C2' C1' 5CA sing 31 n n C2' H2' 5CA sing 32 n n O2' "HO'2" 5CA sing 33 n n C1' N9 5CA sing 34 n n C1' H1' 5CA sing 35 n n N9 C8 5CA sing 36 n y N9 C4 5CA sing 37 n y C8 N7 5CA doub 38 n y C8 H8 5CA sing 39 n n N7 C5 5CA sing 40 n y C5 C6 5CA doub 41 n y C5 C4 5CA sing 42 n y C6 N6 5CA sing 43 n n C6 N1 5CA sing 44 n y N6 H61 5CA sing 45 n n N6 H62 5CA sing 46 n n N1 C2 5CA doub 47 n y C2 N3 5CA sing 48 n y C2 H2 5CA sing 49 n n N3 C4 5CA doub 50 n y # _atom_sites.entry_id 2I4N _atom_sites.fract_transf_matrix[1][1] 0.004589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002696 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 5CA A 1 439 101 5CA 5CA . E 2 5CA B 1 439 102 5CA 5CA . F 2 5CA C 1 439 103 5CA 5CA . G 3 HOH A 1 440 8 HOH HOH . G 3 HOH A 2 441 9 HOH HOH . G 3 HOH A 3 442 10 HOH HOH . G 3 HOH A 4 443 11 HOH HOH . G 3 HOH A 5 444 14 HOH HOH . G 3 HOH A 6 445 19 HOH HOH . G 3 HOH A 7 446 21 HOH HOH . G 3 HOH A 8 447 22 HOH HOH . G 3 HOH A 9 448 24 HOH HOH . G 3 HOH A 10 449 33 HOH HOH . G 3 HOH A 11 450 34 HOH HOH . G 3 HOH A 12 451 35 HOH HOH . G 3 HOH A 13 452 46 HOH HOH . G 3 HOH A 14 453 47 HOH HOH . G 3 HOH A 15 454 49 HOH HOH . G 3 HOH A 16 455 50 HOH HOH . G 3 HOH A 17 456 51 HOH HOH . G 3 HOH A 18 457 52 HOH HOH . G 3 HOH A 19 458 53 HOH HOH . G 3 HOH A 20 459 54 HOH HOH . G 3 HOH A 21 460 56 HOH HOH . G 3 HOH A 22 461 57 HOH HOH . G 3 HOH A 23 462 66 HOH HOH . G 3 HOH A 24 463 68 HOH HOH . G 3 HOH A 25 464 69 HOH HOH . G 3 HOH A 26 465 70 HOH HOH . G 3 HOH A 27 466 74 HOH HOH . G 3 HOH A 28 467 75 HOH HOH . H 3 HOH B 1 440 12 HOH HOH . H 3 HOH B 2 441 13 HOH HOH . H 3 HOH B 3 442 15 HOH HOH . H 3 HOH B 4 443 16 HOH HOH . H 3 HOH B 5 444 17 HOH HOH . H 3 HOH B 6 445 18 HOH HOH . H 3 HOH B 7 446 20 HOH HOH . H 3 HOH B 8 447 23 HOH HOH . H 3 HOH B 9 448 25 HOH HOH . H 3 HOH B 10 449 26 HOH HOH . H 3 HOH B 11 450 27 HOH HOH . H 3 HOH B 12 451 28 HOH HOH . H 3 HOH B 13 452 29 HOH HOH . H 3 HOH B 14 453 30 HOH HOH . H 3 HOH B 15 454 31 HOH HOH . H 3 HOH B 16 455 32 HOH HOH . H 3 HOH B 17 456 48 HOH HOH . H 3 HOH B 18 457 55 HOH HOH . H 3 HOH B 19 458 58 HOH HOH . H 3 HOH B 20 459 59 HOH HOH . H 3 HOH B 21 460 60 HOH HOH . H 3 HOH B 22 461 61 HOH HOH . H 3 HOH B 23 462 62 HOH HOH . H 3 HOH B 24 463 63 HOH HOH . H 3 HOH B 25 464 64 HOH HOH . H 3 HOH B 26 465 65 HOH HOH . H 3 HOH B 27 466 67 HOH HOH . H 3 HOH B 28 467 71 HOH HOH . H 3 HOH B 29 468 72 HOH HOH . H 3 HOH B 30 469 73 HOH HOH . I 3 HOH C 1 440 1 HOH HOH . I 3 HOH C 2 441 2 HOH HOH . I 3 HOH C 3 442 3 HOH HOH . I 3 HOH C 4 443 4 HOH HOH . I 3 HOH C 5 444 5 HOH HOH . I 3 HOH C 6 445 6 HOH HOH . I 3 HOH C 7 446 7 HOH HOH . I 3 HOH C 8 447 36 HOH HOH . I 3 HOH C 9 448 37 HOH HOH . I 3 HOH C 10 449 38 HOH HOH . I 3 HOH C 11 450 39 HOH HOH . I 3 HOH C 12 451 40 HOH HOH . I 3 HOH C 13 452 41 HOH HOH . I 3 HOH C 14 453 42 HOH HOH . I 3 HOH C 15 454 43 HOH HOH . I 3 HOH C 16 455 44 HOH HOH . I 3 HOH C 17 456 45 HOH HOH . I 3 HOH C 18 457 76 HOH HOH . I 3 HOH C 19 458 79 HOH HOH . I 3 HOH C 20 459 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 5CA . . . F 2 18.193 22.457 -34.088 1 45.55 ? N 5CA 439 C 1 HETATM 2 C CA 5CA . . . F 2 18.592 21.784 -32.867 1 45.54 ? CA 5CA 439 C 1 HETATM 3 C CB 5CA . . . F 2 18.485 20.297 -33.096 1 45.69 ? CB 5CA 439 C 1 HETATM 4 S SG 5CA . . . F 2 18.099 20.013 -34.824 1 44.33 ? SG 5CA 439 C 1 HETATM 5 C C 5CA . . . F 2 20.016 22.108 -32.599 1 45.84 ? C 5CA 439 C 1 HETATM 6 O O 5CA . . . F 2 20.61 22.742 -33.468 1 46.16 ? O 5CA 439 C 1 HETATM 7 N N3S 5CA . . . F 2 20.547 21.693 -31.438 1 45.57 ? N3S 5CA 439 C 1 HETATM 8 S S 5CA . . . F 2 22.017 22.011 -31.122 1 46.88 ? S 5CA 439 C 1 HETATM 9 O O1S 5CA . . . F 2 22.352 23.43 -31.391 1 46.03 ? O1S 5CA 439 C 1 HETATM 10 O O2S 5CA . . . F 2 22.291 21.662 -29.702 1 48.96 ? O2S 5CA 439 C 1 HETATM 11 O O5' 5CA . . . F 2 23.04 21.238 -32.124 1 45.08 ? O5' 5CA 439 C 1 HETATM 12 C C5' 5CA . . . F 2 23.025 19.827 -32.1 1 43.42 ? C5' 5CA 439 C 1 HETATM 13 C C4' 5CA . . . F 2 24.456 19.451 -31.863 1 41.88 ? C4' 5CA 439 C 1 HETATM 14 O O4' 5CA . . . F 2 25.284 20.191 -32.748 1 40.84 ? O4' 5CA 439 C 1 HETATM 15 C C3' 5CA . . . F 2 24.935 19.863 -30.484 1 40.62 ? C3' 5CA 439 C 1 HETATM 16 O O3' 5CA . . . F 2 24.526 18.966 -29.457 1 37.36 ? O3' 5CA 439 C 1 HETATM 17 C C2' 5CA . . . F 2 26.432 19.894 -30.684 1 40.88 ? C2' 5CA 439 C 1 HETATM 18 O O2' 5CA . . . F 2 26.996 18.601 -30.474 1 39.59 ? O2' 5CA 439 C 1 HETATM 19 C C1' 5CA . . . F 2 26.588 20.26 -32.151 1 42.1 ? C1' 5CA 439 C 1 HETATM 20 N N9 5CA . . . F 2 27.174 21.616 -32.32 1 43.21 ? N9 5CA 439 C 1 HETATM 21 C C8 5CA . . . F 2 26.58 22.808 -32.094 1 43.39 ? C8 5CA 439 C 1 HETATM 22 N N7 5CA . . . F 2 27.448 23.819 -32.393 1 43.03 ? N7 5CA 439 C 1 HETATM 23 C C5 5CA . . . F 2 28.59 23.24 -32.785 1 41.69 ? C5 5CA 439 C 1 HETATM 24 C C6 5CA . . . F 2 29.881 23.763 -33.235 1 41.99 ? C6 5CA 439 C 1 HETATM 25 N N6 5CA . . . F 2 30.087 25.086 -33.28 1 42.97 ? N6 5CA 439 C 1 HETATM 26 N N1 5CA . . . F 2 30.842 22.899 -33.609 1 42.96 ? N1 5CA 439 C 1 HETATM 27 C C2 5CA . . . F 2 30.607 21.576 -33.531 1 43.11 ? C2 5CA 439 C 1 HETATM 28 N N3 5CA . . . F 2 29.429 21.051 -33.121 1 42.6 ? N3 5CA 439 C 1 HETATM 29 C C4 5CA . . . F 2 28.418 21.865 -32.744 1 43.01 ? C4 5CA 439 C 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #