data_2I5F # _model_server_result.job_id FyL-iIArw2i_4jVlw2m3XQ _model_server_result.datetime_utc '2025-01-05 01:31:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":550}' # _entry.id 2I5F # _exptl.entry_id 2I5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.055 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2R,3R,4R,5S,6S)-6-HYDROXYCYCLOHEXANE-1,2,3,4,5-PENTAYL PENTAKIS[DIHYDROGEN (PHOSPHATE)]' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I5F _cell.length_a 32.15 _cell.length_b 47.7 _cell.length_c 64.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H17 O21 P5' _chem_comp.formula_weight 580.055 _chem_comp.id 5IP _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2R,3R,4R,5S,6S)-6-HYDROXYCYCLOHEXANE-1,2,3,4,5-PENTAYL PENTAKIS[DIHYDROGEN (PHOSPHATE)]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms D-MYO-INS(1,2,3,5,6)P5 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O46 P6 5IP sing 1 n n O46 HO46 5IP sing 2 n n P6 O36 5IP doub 3 n n P6 O16 5IP sing 4 n n P6 O26 5IP sing 5 n n O26 HO26 5IP sing 6 n n O16 C6 5IP sing 7 n n C6 C1 5IP sing 8 n n C6 C5 5IP sing 9 n n C6 H6 5IP sing 10 n n C1 C2 5IP sing 11 n n C1 O11 5IP sing 12 n n C1 H1 5IP sing 13 n n O11 P1 5IP sing 14 n n P1 O41 5IP doub 15 n n P1 O31 5IP sing 16 n n P1 O21 5IP sing 17 n n O31 HO31 5IP sing 18 n n O21 HO21 5IP sing 19 n n C5 C4 5IP sing 20 n n C5 O15 5IP sing 21 n n C5 H5 5IP sing 22 n n O15 P5 5IP sing 23 n n P5 O45 5IP doub 24 n n P5 O35 5IP sing 25 n n P5 O25 5IP sing 26 n n O35 HO35 5IP sing 27 n n O25 HO25 5IP sing 28 n n C4 C3 5IP sing 29 n n C4 O14 5IP sing 30 n n C4 H4 5IP sing 31 n n O14 HO14 5IP sing 32 n n C3 O13 5IP sing 33 n n C3 C2 5IP sing 34 n n C3 H3 5IP sing 35 n n O13 P3 5IP sing 36 n n P3 O43 5IP doub 37 n n P3 O23 5IP sing 38 n n P3 O33 5IP sing 39 n n O33 HO33 5IP sing 40 n n O23 HO23 5IP sing 41 n n C2 O12 5IP sing 42 n n C2 H2 5IP sing 43 n n O12 P2 5IP sing 44 n n P2 O32 5IP doub 45 n n P2 O42 5IP sing 46 n n P2 O22 5IP sing 47 n n O22 HO22 5IP sing 48 n n O42 HO42 5IP sing 49 n n # _atom_sites.entry_id 2I5F _atom_sites.fract_transf_matrix[1][1] 0.031104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5IP A 1 550 550 5IP 5IP . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . C 3 HOH A 63 63 63 HOH HOH . C 3 HOH A 64 64 64 HOH HOH . C 3 HOH A 65 65 65 HOH HOH . C 3 HOH A 66 66 66 HOH HOH . C 3 HOH A 67 67 67 HOH HOH . C 3 HOH A 68 68 68 HOH HOH . C 3 HOH A 69 69 69 HOH HOH . C 3 HOH A 70 70 70 HOH HOH . C 3 HOH A 71 71 71 HOH HOH . C 3 HOH A 72 72 72 HOH HOH . C 3 HOH A 73 73 73 HOH HOH . C 3 HOH A 74 74 74 HOH HOH . C 3 HOH A 75 75 75 HOH HOH . C 3 HOH A 76 76 76 HOH HOH . C 3 HOH A 77 77 77 HOH HOH . C 3 HOH A 78 78 78 HOH HOH . C 3 HOH A 79 79 79 HOH HOH . C 3 HOH A 80 80 80 HOH HOH . C 3 HOH A 81 81 81 HOH HOH . C 3 HOH A 82 82 82 HOH HOH . C 3 HOH A 83 83 83 HOH HOH . C 3 HOH A 84 84 84 HOH HOH . C 3 HOH A 85 85 85 HOH HOH . C 3 HOH A 86 86 86 HOH HOH . C 3 HOH A 87 87 87 HOH HOH . C 3 HOH A 88 88 88 HOH HOH . C 3 HOH A 89 89 89 HOH HOH . C 3 HOH A 90 90 90 HOH HOH . C 3 HOH A 91 91 91 HOH HOH . C 3 HOH A 92 92 92 HOH HOH . C 3 HOH A 93 94 94 HOH HOH . C 3 HOH A 94 95 95 HOH HOH . C 3 HOH A 95 96 96 HOH HOH . C 3 HOH A 96 97 97 HOH HOH . C 3 HOH A 97 98 98 HOH HOH . C 3 HOH A 98 99 99 HOH HOH . C 3 HOH A 99 100 100 HOH HOH . C 3 HOH A 100 101 101 HOH HOH . C 3 HOH A 101 102 102 HOH HOH . C 3 HOH A 102 103 103 HOH HOH . C 3 HOH A 103 104 104 HOH HOH . C 3 HOH A 104 105 105 HOH HOH . C 3 HOH A 105 106 106 HOH HOH . C 3 HOH A 106 107 107 HOH HOH . C 3 HOH A 107 108 108 HOH HOH . C 3 HOH A 108 109 109 HOH HOH . C 3 HOH A 109 110 110 HOH HOH . C 3 HOH A 110 111 111 HOH HOH . C 3 HOH A 111 112 112 HOH HOH . C 3 HOH A 112 113 113 HOH HOH . C 3 HOH A 113 114 114 HOH HOH . C 3 HOH A 114 115 115 HOH HOH . C 3 HOH A 115 116 116 HOH HOH . C 3 HOH A 116 117 117 HOH HOH . C 3 HOH A 117 118 118 HOH HOH . C 3 HOH A 118 119 119 HOH HOH . C 3 HOH A 119 120 120 HOH HOH . C 3 HOH A 120 121 121 HOH HOH . C 3 HOH A 121 122 122 HOH HOH . C 3 HOH A 122 123 123 HOH HOH . C 3 HOH A 123 124 124 HOH HOH . C 3 HOH A 124 125 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O46 5IP . . . B 2 8.238 -12.118 -1.122 1 17 ? O46 5IP 550 A 1 HETATM 2 P P6 5IP . . . B 2 6.746 -11.994 -1.593 1 27.67 ? P6 5IP 550 A 1 HETATM 3 O O26 5IP . . . B 2 6.061 -11.981 -0.215 1 27.26 ? O26 5IP 550 A 1 HETATM 4 O O36 5IP . . . B 2 6.532 -10.889 -2.723 1 25.69 ? O36 5IP 550 A 1 HETATM 5 O O16 5IP . . . B 2 6.48 -13.375 -2.452 1 18.34 ? O16 5IP 550 A 1 HETATM 6 C C6 5IP . . . B 2 5.547 -13.117 -3.569 1 30.71 ? C6 5IP 550 A 1 HETATM 7 C C1 5IP . . . B 2 6.311 -13.407 -4.819 1 34.41 ? C1 5IP 550 A 1 HETATM 8 O O11 5IP . . . B 2 7.652 -13.694 -4.398 1 33.31 ? O11 5IP 550 A 1 HETATM 9 P P1 5IP . . . B 2 9.193 -13.679 -4.938 1 37.75 ? P1 5IP 550 A 1 HETATM 10 O O41 5IP . . . B 2 9.183 -14.852 -5.903 1 36.95 ? O41 5IP 550 A 1 HETATM 11 O O31 5IP . . . B 2 9.524 -12.336 -5.569 1 34.64 ? O31 5IP 550 A 1 HETATM 12 O O21 5IP . . . B 2 9.853 -13.886 -3.582 1 33.96 ? O21 5IP 550 A 1 HETATM 13 C C5 5IP . . . B 2 4.327 -13.974 -3.436 1 34.63 ? C5 5IP 550 A 1 HETATM 14 O O15 5IP . . . B 2 3.51 -13.633 -2.49 1 39.66 ? O15 5IP 550 A 1 HETATM 15 P P5 5IP . . . B 2 3.121 -14.3 -1.076 1 33.29 ? P5 5IP 550 A 1 HETATM 16 O O45 5IP . . . B 2 2.521 -15.697 -1.035 1 41.5 ? O45 5IP 550 A 1 HETATM 17 O O35 5IP . . . B 2 2.325 -13.016 -0.997 1 39.02 ? O35 5IP 550 A 1 HETATM 18 O O25 5IP . . . B 2 4.741 -14.112 -0.115 1 26.93 ? O25 5IP 550 A 1 HETATM 19 C C4 5IP . . . B 2 3.424 -14.571 -4.655 1 31.13 ? C4 5IP 550 A 1 HETATM 20 O O14 5IP . . . B 2 2.527 -15.69 -4.222 1 36.11 ? O14 5IP 550 A 1 HETATM 21 C C3 5IP . . . B 2 4.319 -15.239 -5.647 1 29.43 ? C3 5IP 550 A 1 HETATM 22 O O13 5IP . . . B 2 3.412 -15.367 -6.774 1 31.11 ? O13 5IP 550 A 1 HETATM 23 P P3 5IP . . . B 2 3.723 -16.332 -8.005 1 31.11 ? P3 5IP 550 A 1 HETATM 24 O O43 5IP . . . B 2 3.686 -15.528 -9.289 1 41.15 ? O43 5IP 550 A 1 HETATM 25 O O33 5IP . . . B 2 5.045 -17.037 -7.694 1 31.63 ? O33 5IP 550 A 1 HETATM 26 O O23 5IP . . . B 2 2.467 -17.193 -7.836 1 37.16 ? O23 5IP 550 A 1 HETATM 27 C C2 5IP . . . B 2 5.591 -14.339 -5.86 1 32.63 ? C2 5IP 550 A 1 HETATM 28 O O12 5IP . . . B 2 5.166 -13.155 -6.436 1 32.02 ? O12 5IP 550 A 1 HETATM 29 P P2 5IP . . . B 2 5.763 -12.879 -7.89 1 26.29 ? P2 5IP 550 A 1 HETATM 30 O O22 5IP . . . B 2 7.181 -12.303 -7.958 1 25.16 ? O22 5IP 550 A 1 HETATM 31 O O32 5IP . . . B 2 5.882 -14.227 -8.634 1 27.29 ? O32 5IP 550 A 1 HETATM 32 O O42 5IP . . . B 2 4.683 -11.919 -8.471 1 36.84 ? O42 5IP 550 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #