data_2I5J # _model_server_result.job_id TlZHnjvuqMJSwRWi4wvIEw _model_server_result.datetime_utc '2025-03-04 16:18:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2003}' # _entry.id 2I5J # _exptl.entry_id 2I5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.48 _cell.angle_gamma 90 _cell.entry_id 2I5J _cell.length_a 224.815 _cell.length_b 68.896 _cell.length_c 104.662 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC ? 3000 SUC 3 n C FRU 2 C 2 FRU ? 3000 SUC 3 n D GLC 1 D 1 GLC ? 3001 SUC 3 n D FRU 2 D 2 FRU ? 3001 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing covale ? covale2 D C1 GLC . D GLC 1 1_555 D O2 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing metalc ? metalc1 A OD1 ASP 443 A ASP 443 1_555 H MG MG . A MG 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc2 A OD1 ASP 498 A ASP 498 1_555 H MG MG . A MG 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 107 n n C1 O1 GLC sing 108 n n C1 O5 GLC sing 109 n n C1 H1 GLC sing 110 n n C2 C3 GLC sing 111 n n C2 O2 GLC sing 112 n n C2 H2 GLC sing 113 n n C3 C4 GLC sing 114 n n C3 O3 GLC sing 115 n n C3 H3 GLC sing 116 n n C4 C5 GLC sing 117 n n C4 O4 GLC sing 118 n n C4 H4 GLC sing 119 n n C5 C6 GLC sing 120 n n C5 O5 GLC sing 121 n n C5 H5 GLC sing 122 n n C6 O6 GLC sing 123 n n C6 H61 GLC sing 124 n n C6 H62 GLC sing 125 n n O1 HO1 GLC sing 126 n n O2 HO2 GLC sing 127 n n O3 HO3 GLC sing 128 n n O4 HO4 GLC sing 129 n n O6 HO6 GLC sing 130 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2I5J _atom_sites.fract_transf_matrix[1][1] 0.004448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001316 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GLC A 1 2001 2001 GLC GLC . F 4 GLC A 1 2002 2002 GLC GLC . G 5 K05 A 1 4001 4001 K05 K05 . H 6 MG A 1 5001 5001 MG MG . I 4 GLC B 1 2003 2003 GLC GLC . J 7 HOH A 1 1001 1001 HOH WAT . J 7 HOH A 2 1004 1004 HOH WAT . J 7 HOH A 3 1005 1005 HOH WAT . J 7 HOH A 4 1006 1006 HOH WAT . J 7 HOH A 5 1010 1010 HOH WAT . J 7 HOH A 6 1013 1013 HOH WAT . J 7 HOH A 7 1021 1021 HOH WAT . J 7 HOH A 8 1022 1022 HOH WAT . J 7 HOH A 9 1023 1023 HOH WAT . J 7 HOH A 10 1024 1024 HOH WAT . J 7 HOH A 11 1026 1026 HOH WAT . J 7 HOH A 12 1029 1029 HOH WAT . J 7 HOH A 13 1030 1030 HOH WAT . J 7 HOH A 14 1031 1031 HOH WAT . J 7 HOH A 15 1032 1032 HOH WAT . J 7 HOH A 16 1033 1033 HOH WAT . J 7 HOH A 17 1034 1034 HOH WAT . J 7 HOH A 18 1035 1035 HOH WAT . J 7 HOH A 19 1036 1036 HOH WAT . K 7 HOH B 1 1002 1002 HOH WAT . K 7 HOH B 2 1003 1003 HOH WAT . K 7 HOH B 3 1007 1007 HOH WAT . K 7 HOH B 4 1008 1008 HOH WAT . K 7 HOH B 5 1009 1009 HOH WAT . K 7 HOH B 6 1011 1011 HOH WAT . K 7 HOH B 7 1012 1012 HOH WAT . K 7 HOH B 8 1014 1014 HOH WAT . K 7 HOH B 9 1015 1015 HOH WAT . K 7 HOH B 10 1016 1016 HOH WAT . K 7 HOH B 11 1017 1017 HOH WAT . K 7 HOH B 12 1018 1018 HOH WAT . K 7 HOH B 13 1019 1019 HOH WAT . K 7 HOH B 14 1020 1020 HOH WAT . K 7 HOH B 15 1025 1025 HOH WAT . K 7 HOH B 16 1027 1027 HOH WAT . K 7 HOH B 17 1028 1028 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . I 4 79.34 7.732 46.604 1 142.03 ? C1 GLC 2003 B 1 HETATM 2 C C2 GLC . . . I 4 78.349 7.969 45.451 1 138.9 ? C2 GLC 2003 B 1 HETATM 3 C C3 GLC . . . I 4 76.92 7.719 45.963 1 137.37 ? C3 GLC 2003 B 1 HETATM 4 C C4 GLC . . . I 4 76.814 6.318 46.616 1 134.68 ? C4 GLC 2003 B 1 HETATM 5 C C5 GLC . . . I 4 77.997 5.959 47.568 1 134.37 ? C5 GLC 2003 B 1 HETATM 6 C C6 GLC . . . I 4 78.054 4.439 47.785 1 124.03 ? C6 GLC 2003 B 1 HETATM 7 O O1 GLC . . . I 4 79.003 8.523 47.703 1 150 ? O1 GLC 2003 B 1 HETATM 8 O O2 GLC . . . I 4 78.487 9.294 44.947 1 120.79 ? O2 GLC 2003 B 1 HETATM 9 O O3 GLC . . . I 4 76.017 7.796 44.867 1 124.65 ? O3 GLC 2003 B 1 HETATM 10 O O4 GLC . . . I 4 75.604 6.246 47.358 1 122.65 ? O4 GLC 2003 B 1 HETATM 11 O O5 GLC . . . I 4 79.279 6.348 46.998 1 141.35 ? O5 GLC 2003 B 1 HETATM 12 O O6 GLC . . . I 4 79.284 4.017 48.372 1 101.57 ? O6 GLC 2003 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #