data_2I5J # _model_server_result.job_id N2AIqIexa4OFAZw4HitUFw _model_server_result.datetime_utc '2025-03-04 16:36:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":4001}' # _entry.id 2I5J # _exptl.entry_id 2I5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.341 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(E)-3,4-DIHYDROXY-N'-[(2-METHOXYNAPHTHALEN-1-YL)METHYLENE]BENZOHYDRAZIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.48 _cell.angle_gamma 90 _cell.entry_id 2I5J _cell.length_a 224.815 _cell.length_b 68.896 _cell.length_c 104.662 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC ? 3000 SUC 3 n C FRU 2 C 2 FRU ? 3000 SUC 3 n D GLC 1 D 1 GLC ? 3001 SUC 3 n D FRU 2 D 2 FRU ? 3001 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing covale ? covale2 D C1 GLC . D GLC 1 1_555 D O2 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing metalc ? metalc1 A OD1 ASP 443 A ASP 443 1_555 H MG MG . A MG 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc2 A OD1 ASP 498 A ASP 498 1_555 H MG MG . A MG 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'C19 H16 N2 O4' _chem_comp.formula_weight 336.341 _chem_comp.id K05 _chem_comp.mon_nstd_flag . _chem_comp.name "(E)-3,4-DIHYDROXY-N'-[(2-METHOXYNAPHTHALEN-1-YL)METHYLENE]BENZOHYDRAZIDE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C11 K05 doub 221 e n N1 N2 K05 sing 222 n n N2 C3 K05 sing 223 n n N2 HN2 K05 sing 224 n n C3 O3 K05 doub 225 n n C3 C1' K05 sing 226 n n C1' C2' K05 doub 227 n y C1' C6' K05 sing 228 n y C2' C3' K05 sing 229 n y C2' H2' K05 sing 230 n n C3' OH4 K05 sing 231 n n C3' C4' K05 doub 232 n y C4' C5' K05 sing 233 n y C4' OH3 K05 sing 234 n n C5' C6' K05 doub 235 n y C5' H5' K05 sing 236 n n C6' H6' K05 sing 237 n n OH3 HOH3 K05 sing 238 n n OH4 HOH4 K05 sing 239 n n C11 C12 K05 sing 240 n n C11 H112 K05 sing 241 n n C12 C13 K05 doub 242 n y C12 C29 K05 sing 243 n y C13 C14 K05 sing 244 n y C13 O13 K05 sing 245 n n O13 C10 K05 sing 246 n n C14 C15 K05 doub 247 n y C14 H14 K05 sing 248 n n C15 C25 K05 sing 249 n y C15 H15 K05 sing 250 n n C25 C16 K05 doub 251 n y C25 C29 K05 sing 252 n y C16 C17 K05 sing 253 n y C16 H16 K05 sing 254 n n C17 C18 K05 doub 255 n y C17 H17 K05 sing 256 n n C18 C19 K05 sing 257 n y C18 H18 K05 sing 258 n n C19 C29 K05 doub 259 n y C19 H19 K05 sing 260 n n C10 H101 K05 sing 261 n n C10 H102 K05 sing 262 n n C10 H103 K05 sing 263 n n # _atom_sites.entry_id 2I5J _atom_sites.fract_transf_matrix[1][1] 0.004448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001316 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GLC A 1 2001 2001 GLC GLC . F 4 GLC A 1 2002 2002 GLC GLC . G 5 K05 A 1 4001 4001 K05 K05 . H 6 MG A 1 5001 5001 MG MG . I 4 GLC B 1 2003 2003 GLC GLC . J 7 HOH A 1 1001 1001 HOH WAT . J 7 HOH A 2 1004 1004 HOH WAT . J 7 HOH A 3 1005 1005 HOH WAT . J 7 HOH A 4 1006 1006 HOH WAT . J 7 HOH A 5 1010 1010 HOH WAT . J 7 HOH A 6 1013 1013 HOH WAT . J 7 HOH A 7 1021 1021 HOH WAT . J 7 HOH A 8 1022 1022 HOH WAT . J 7 HOH A 9 1023 1023 HOH WAT . J 7 HOH A 10 1024 1024 HOH WAT . J 7 HOH A 11 1026 1026 HOH WAT . J 7 HOH A 12 1029 1029 HOH WAT . J 7 HOH A 13 1030 1030 HOH WAT . J 7 HOH A 14 1031 1031 HOH WAT . J 7 HOH A 15 1032 1032 HOH WAT . J 7 HOH A 16 1033 1033 HOH WAT . J 7 HOH A 17 1034 1034 HOH WAT . J 7 HOH A 18 1035 1035 HOH WAT . J 7 HOH A 19 1036 1036 HOH WAT . K 7 HOH B 1 1002 1002 HOH WAT . K 7 HOH B 2 1003 1003 HOH WAT . K 7 HOH B 3 1007 1007 HOH WAT . K 7 HOH B 4 1008 1008 HOH WAT . K 7 HOH B 5 1009 1009 HOH WAT . K 7 HOH B 6 1011 1011 HOH WAT . K 7 HOH B 7 1012 1012 HOH WAT . K 7 HOH B 8 1014 1014 HOH WAT . K 7 HOH B 9 1015 1015 HOH WAT . K 7 HOH B 10 1016 1016 HOH WAT . K 7 HOH B 11 1017 1017 HOH WAT . K 7 HOH B 12 1018 1018 HOH WAT . K 7 HOH B 13 1019 1019 HOH WAT . K 7 HOH B 14 1020 1020 HOH WAT . K 7 HOH B 15 1025 1025 HOH WAT . K 7 HOH B 16 1027 1027 HOH WAT . K 7 HOH B 17 1028 1028 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 K05 . . . G 5 46.4 -25.472 18.136 1 91.56 ? N1 K05 4001 A 1 HETATM 2 N N2 K05 . . . G 5 46.978 -24.794 19.068 1 108.28 ? N2 K05 4001 A 1 HETATM 3 C C3 K05 . . . G 5 46.411 -24.761 20.447 1 111.67 ? C3 K05 4001 A 1 HETATM 4 O O3 K05 . . . G 5 45.157 -25.528 20.772 1 111.3 ? O3 K05 4001 A 1 HETATM 5 C C1' K05 . . . G 5 47.086 -23.969 21.475 1 108.88 ? C1' K05 4001 A 1 HETATM 6 C C2' K05 . . . G 5 48.138 -22.96 21.187 1 99.12 ? C2' K05 4001 A 1 HETATM 7 C C3' K05 . . . G 5 48.747 -22.216 22.327 1 103.01 ? C3' K05 4001 A 1 HETATM 8 C C4' K05 . . . G 5 48.341 -22.458 23.69 1 103.43 ? C4' K05 4001 A 1 HETATM 9 C C5' K05 . . . G 5 47.301 -23.451 23.986 1 104.81 ? C5' K05 4001 A 1 HETATM 10 C C6' K05 . . . G 5 46.704 -24.178 22.893 1 108.42 ? C6' K05 4001 A 1 HETATM 11 O OH3 K05 . . . G 5 48.955 -21.731 24.673 1 113.74 ? OH3 K05 4001 A 1 HETATM 12 O OH4 K05 . . . G 5 49.712 -21.279 22.155 1 86.28 ? OH4 K05 4001 A 1 HETATM 13 C C11 K05 . . . G 5 46.673 -25.038 16.866 1 88.33 ? C11 K05 4001 A 1 HETATM 14 C C12 K05 . . . G 5 46.119 -25.624 15.651 1 93.3 ? C12 K05 4001 A 1 HETATM 15 C C13 K05 . . . G 5 45.232 -24.694 14.847 1 107.68 ? C13 K05 4001 A 1 HETATM 16 O O13 K05 . . . G 5 45.05 -23.424 15.373 1 105.98 ? O13 K05 4001 A 1 HETATM 17 C C14 K05 . . . G 5 44.588 -25.198 13.568 1 107.45 ? C14 K05 4001 A 1 HETATM 18 C C15 K05 . . . G 5 44.819 -26.527 13.079 1 103.88 ? C15 K05 4001 A 1 HETATM 19 C C25 K05 . . . G 5 45.658 -27.44 13.826 1 108.63 ? C25 K05 4001 A 1 HETATM 20 C C16 K05 . . . G 5 45.881 -28.803 13.301 1 109.93 ? C16 K05 4001 A 1 HETATM 21 C C17 K05 . . . G 5 46.731 -29.734 14.041 1 109.45 ? C17 K05 4001 A 1 HETATM 22 C C18 K05 . . . G 5 47.371 -29.283 15.284 1 108.42 ? C18 K05 4001 A 1 HETATM 23 C C19 K05 . . . G 5 47.196 -27.952 15.858 1 111.92 ? C19 K05 4001 A 1 HETATM 24 C C29 K05 . . . G 5 46.366 -26.991 15.159 1 102.07 ? C29 K05 4001 A 1 HETATM 25 C C10 K05 . . . G 5 44.254 -22.42 14.77 1 89.06 ? C10 K05 4001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #