data_2I5R # _model_server_result.job_id VynTuFLs9XraybnaAZSueQ _model_server_result.datetime_utc '2025-02-05 16:05:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":402}' # _entry.id 2I5R # _exptl.entry_id 2I5R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I5R _cell.length_a 36.667 _cell.length_b 73.031 _cell.length_c 114.922 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,O 1 1 B,G,H,I,P 2 1 C,J,K,L,M,N,Q 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 61 A ASP 58 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 A OD2 ASP 63 A ASP 60 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 A OE2 GLU 91 A GLU 88 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc4 D MG MG . A MG 301 1_555 O O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc5 D MG MG . A MG 301 1_555 O O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc6 D MG MG . A MG 301 1_555 O O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 B OD2 ASP 61 B ASP 58 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc8 B OD2 ASP 63 B ASP 60 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc9 G MG MG . B MG 302 1_555 P O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc10 G MG MG . B MG 302 1_555 P O HOH . B HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2I5R _atom_sites.fract_transf_matrix[1][1] 0.027272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 301 301 MG MG . E 3 GOL A 1 400 400 GOL GOL . F 3 GOL A 1 404 404 GOL GOL . G 2 MG B 1 302 302 MG MG . H 3 GOL B 1 401 401 GOL GOL . I 3 GOL B 1 403 403 GOL GOL . J 4 SO4 C 1 501 501 SO4 SO4 . K 4 SO4 C 1 502 502 SO4 SO4 . L 5 MES C 1 601 601 MES MES . M 3 GOL C 1 402 402 GOL GOL . N 3 GOL C 1 405 405 GOL GOL . O 6 HOH A 1 405 15 HOH HOH . O 6 HOH A 2 406 16 HOH HOH . O 6 HOH A 3 407 21 HOH HOH . O 6 HOH A 4 408 22 HOH HOH . O 6 HOH A 5 409 27 HOH HOH . O 6 HOH A 6 410 30 HOH HOH . O 6 HOH A 7 411 31 HOH HOH . O 6 HOH A 8 412 33 HOH HOH . O 6 HOH A 9 413 35 HOH HOH . O 6 HOH A 10 414 37 HOH HOH . O 6 HOH A 11 415 39 HOH HOH . O 6 HOH A 12 416 42 HOH HOH . O 6 HOH A 13 417 43 HOH HOH . O 6 HOH A 14 418 45 HOH HOH . O 6 HOH A 15 419 47 HOH HOH . O 6 HOH A 16 420 48 HOH HOH . O 6 HOH A 17 421 50 HOH HOH . O 6 HOH A 18 422 53 HOH HOH . O 6 HOH A 19 423 59 HOH HOH . O 6 HOH A 20 424 61 HOH HOH . O 6 HOH A 21 425 68 HOH HOH . O 6 HOH A 22 426 70 HOH HOH . O 6 HOH A 23 427 71 HOH HOH . O 6 HOH A 24 428 72 HOH HOH . O 6 HOH A 25 429 74 HOH HOH . O 6 HOH A 26 430 75 HOH HOH . O 6 HOH A 27 431 78 HOH HOH . O 6 HOH A 28 432 83 HOH HOH . O 6 HOH A 29 433 93 HOH HOH . O 6 HOH A 30 434 97 HOH HOH . O 6 HOH A 31 435 100 HOH HOH . O 6 HOH A 32 436 103 HOH HOH . O 6 HOH A 33 437 105 HOH HOH . O 6 HOH A 34 438 107 HOH HOH . O 6 HOH A 35 439 108 HOH HOH . O 6 HOH A 36 440 109 HOH HOH . O 6 HOH A 37 441 112 HOH HOH . O 6 HOH A 38 442 114 HOH HOH . O 6 HOH A 39 443 115 HOH HOH . O 6 HOH A 40 444 122 HOH HOH . O 6 HOH A 41 445 126 HOH HOH . O 6 HOH A 42 446 129 HOH HOH . O 6 HOH A 43 447 139 HOH HOH . O 6 HOH A 44 448 141 HOH HOH . O 6 HOH A 45 449 142 HOH HOH . O 6 HOH A 46 450 148 HOH HOH . O 6 HOH A 47 451 149 HOH HOH . O 6 HOH A 48 452 155 HOH HOH . O 6 HOH A 49 453 157 HOH HOH . O 6 HOH A 50 454 160 HOH HOH . O 6 HOH A 51 455 164 HOH HOH . O 6 HOH A 52 456 167 HOH HOH . O 6 HOH A 53 457 168 HOH HOH . O 6 HOH A 54 458 173 HOH HOH . O 6 HOH A 55 459 176 HOH HOH . O 6 HOH A 56 460 183 HOH HOH . O 6 HOH A 57 461 187 HOH HOH . O 6 HOH A 58 462 188 HOH HOH . O 6 HOH A 59 463 190 HOH HOH . O 6 HOH A 60 464 191 HOH HOH . O 6 HOH A 61 465 195 HOH HOH . O 6 HOH A 62 466 199 HOH HOH . O 6 HOH A 63 467 206 HOH HOH . O 6 HOH A 64 468 211 HOH HOH . P 6 HOH B 1 404 8 HOH HOH . P 6 HOH B 2 405 12 HOH HOH . P 6 HOH B 3 406 20 HOH HOH . P 6 HOH B 4 407 24 HOH HOH . P 6 HOH B 5 408 26 HOH HOH . P 6 HOH B 6 409 28 HOH HOH . P 6 HOH B 7 410 29 HOH HOH . P 6 HOH B 8 411 36 HOH HOH . P 6 HOH B 9 412 41 HOH HOH . P 6 HOH B 10 413 44 HOH HOH . P 6 HOH B 11 414 49 HOH HOH . P 6 HOH B 12 415 51 HOH HOH . P 6 HOH B 13 416 52 HOH HOH . P 6 HOH B 14 417 54 HOH HOH . P 6 HOH B 15 418 55 HOH HOH . P 6 HOH B 16 419 58 HOH HOH . P 6 HOH B 17 420 60 HOH HOH . P 6 HOH B 18 421 64 HOH HOH . P 6 HOH B 19 422 65 HOH HOH . P 6 HOH B 20 423 67 HOH HOH . P 6 HOH B 21 424 69 HOH HOH . P 6 HOH B 22 425 73 HOH HOH . P 6 HOH B 23 426 84 HOH HOH . P 6 HOH B 24 427 85 HOH HOH . P 6 HOH B 25 428 87 HOH HOH . P 6 HOH B 26 429 88 HOH HOH . P 6 HOH B 27 430 91 HOH HOH . P 6 HOH B 28 431 95 HOH HOH . P 6 HOH B 29 432 98 HOH HOH . P 6 HOH B 30 433 110 HOH HOH . P 6 HOH B 31 434 111 HOH HOH . P 6 HOH B 32 435 116 HOH HOH . P 6 HOH B 33 436 117 HOH HOH . P 6 HOH B 34 437 118 HOH HOH . P 6 HOH B 35 438 119 HOH HOH . P 6 HOH B 36 439 132 HOH HOH . P 6 HOH B 37 440 145 HOH HOH . P 6 HOH B 38 441 150 HOH HOH . P 6 HOH B 39 442 152 HOH HOH . P 6 HOH B 40 443 153 HOH HOH . P 6 HOH B 41 444 154 HOH HOH . P 6 HOH B 42 445 158 HOH HOH . P 6 HOH B 43 446 159 HOH HOH . P 6 HOH B 44 447 161 HOH HOH . P 6 HOH B 45 448 162 HOH HOH . P 6 HOH B 46 449 163 HOH HOH . P 6 HOH B 47 450 169 HOH HOH . P 6 HOH B 48 451 171 HOH HOH . P 6 HOH B 49 452 174 HOH HOH . P 6 HOH B 50 453 175 HOH HOH . P 6 HOH B 51 454 181 HOH HOH . P 6 HOH B 52 455 182 HOH HOH . P 6 HOH B 53 456 189 HOH HOH . P 6 HOH B 54 457 192 HOH HOH . P 6 HOH B 55 458 194 HOH HOH . P 6 HOH B 56 459 196 HOH HOH . P 6 HOH B 57 460 197 HOH HOH . P 6 HOH B 58 461 201 HOH HOH . P 6 HOH B 59 462 203 HOH HOH . P 6 HOH B 60 463 204 HOH HOH . P 6 HOH B 61 464 205 HOH HOH . P 6 HOH B 62 465 207 HOH HOH . P 6 HOH B 63 466 210 HOH HOH . Q 6 HOH C 1 602 1 HOH HOH . Q 6 HOH C 2 603 2 HOH HOH . Q 6 HOH C 3 604 3 HOH HOH . Q 6 HOH C 4 605 4 HOH HOH . Q 6 HOH C 5 606 5 HOH HOH . Q 6 HOH C 6 607 6 HOH HOH . Q 6 HOH C 7 608 7 HOH HOH . Q 6 HOH C 8 609 9 HOH HOH . Q 6 HOH C 9 610 10 HOH HOH . Q 6 HOH C 10 611 11 HOH HOH . Q 6 HOH C 11 612 13 HOH HOH . Q 6 HOH C 12 613 14 HOH HOH . Q 6 HOH C 13 614 17 HOH HOH . Q 6 HOH C 14 615 18 HOH HOH . Q 6 HOH C 15 616 19 HOH HOH . Q 6 HOH C 16 617 23 HOH HOH . Q 6 HOH C 17 618 25 HOH HOH . Q 6 HOH C 18 619 32 HOH HOH . Q 6 HOH C 19 620 34 HOH HOH . Q 6 HOH C 20 621 38 HOH HOH . Q 6 HOH C 21 622 40 HOH HOH . Q 6 HOH C 22 623 46 HOH HOH . Q 6 HOH C 23 624 56 HOH HOH . Q 6 HOH C 24 625 57 HOH HOH . Q 6 HOH C 25 626 62 HOH HOH . Q 6 HOH C 26 627 63 HOH HOH . Q 6 HOH C 27 628 66 HOH HOH . Q 6 HOH C 28 629 76 HOH HOH . Q 6 HOH C 29 630 77 HOH HOH . Q 6 HOH C 30 631 79 HOH HOH . Q 6 HOH C 31 632 80 HOH HOH . Q 6 HOH C 32 633 81 HOH HOH . Q 6 HOH C 33 634 82 HOH HOH . Q 6 HOH C 34 635 86 HOH HOH . Q 6 HOH C 35 636 89 HOH HOH . Q 6 HOH C 36 637 90 HOH HOH . Q 6 HOH C 37 638 92 HOH HOH . Q 6 HOH C 38 639 94 HOH HOH . Q 6 HOH C 39 640 96 HOH HOH . Q 6 HOH C 40 641 99 HOH HOH . Q 6 HOH C 41 642 101 HOH HOH . Q 6 HOH C 42 643 102 HOH HOH . Q 6 HOH C 43 644 104 HOH HOH . Q 6 HOH C 44 645 106 HOH HOH . Q 6 HOH C 45 646 113 HOH HOH . Q 6 HOH C 46 647 120 HOH HOH . Q 6 HOH C 47 648 121 HOH HOH . Q 6 HOH C 48 649 123 HOH HOH . Q 6 HOH C 49 650 124 HOH HOH . Q 6 HOH C 50 651 125 HOH HOH . Q 6 HOH C 51 652 127 HOH HOH . Q 6 HOH C 52 653 128 HOH HOH . Q 6 HOH C 53 654 130 HOH HOH . Q 6 HOH C 54 655 131 HOH HOH . Q 6 HOH C 55 656 133 HOH HOH . Q 6 HOH C 56 657 134 HOH HOH . Q 6 HOH C 57 658 135 HOH HOH . Q 6 HOH C 58 659 136 HOH HOH . Q 6 HOH C 59 660 137 HOH HOH . Q 6 HOH C 60 661 138 HOH HOH . Q 6 HOH C 61 662 140 HOH HOH . Q 6 HOH C 62 663 143 HOH HOH . Q 6 HOH C 63 664 144 HOH HOH . Q 6 HOH C 64 665 146 HOH HOH . Q 6 HOH C 65 666 147 HOH HOH . Q 6 HOH C 66 667 151 HOH HOH . Q 6 HOH C 67 668 156 HOH HOH . Q 6 HOH C 68 669 165 HOH HOH . Q 6 HOH C 69 670 166 HOH HOH . Q 6 HOH C 70 671 170 HOH HOH . Q 6 HOH C 71 672 172 HOH HOH . Q 6 HOH C 72 673 177 HOH HOH . Q 6 HOH C 73 674 178 HOH HOH . Q 6 HOH C 74 675 179 HOH HOH . Q 6 HOH C 75 676 180 HOH HOH . Q 6 HOH C 76 677 184 HOH HOH . Q 6 HOH C 77 678 185 HOH HOH . Q 6 HOH C 78 679 186 HOH HOH . Q 6 HOH C 79 680 193 HOH HOH . Q 6 HOH C 80 681 198 HOH HOH . Q 6 HOH C 81 682 200 HOH HOH . Q 6 HOH C 82 683 202 HOH HOH . Q 6 HOH C 83 684 208 HOH HOH . Q 6 HOH C 84 685 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 3 22.109 41.064 34.268 1 22.22 ? C1 GOL 402 C 1 HETATM 2 O O1 GOL . . . M 3 22.505 40.348 35.425 1 28.13 ? O1 GOL 402 C 1 HETATM 3 C C2 GOL . . . M 3 22.569 40.297 33.036 1 19.08 ? C2 GOL 402 C 1 HETATM 4 O O2 GOL . . . M 3 23.967 40.087 33.104 0.5 11.35 ? O2 GOL 402 C 1 HETATM 5 C C3 GOL . . . M 3 21.817 38.952 32.984 1 18.9 ? C3 GOL 402 C 1 HETATM 6 O O3 GOL . . . M 3 22.317 38.144 31.933 1 15.78 ? O3 GOL 402 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #