data_2I5W # _model_server_result.job_id 0eOUYdoi2BXEYmjVmZHZ_g _model_server_result.datetime_utc '2024-11-29 16:14:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":325}' # _entry.id 2I5W # _exptl.entry_id 2I5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2I5W _cell.length_a 91.524 _cell.length_b 91.524 _cell.length_c 211.848 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 4 F DG 23 1_555 B P 8OG 5 F 8OG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale2 B O3' 8OG 5 F 8OG 24 1_555 B P DT 6 F DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? metalc ? metalc1 B OP1 DC 7 F DC 26 1_555 D CA CA . F CA 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 B OP2 DC 7 F DC 26 1_555 D CA CA . F CA 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc3 D CA CA . F CA 61 1_555 C O CYS 233 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc4 D CA CA . F CA 61 1_555 C O LEU 235 A LEU 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? metalc ? metalc5 D CA CA . F CA 61 1_555 C O VAL 238 A VAL 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc6 E CA CA . A CA 324 1_555 I O HOH . A HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc7 E CA CA . A CA 324 1_555 I O HOH . A HOH 372 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 E DG 2 1_555 B N3 DC 10 F DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 E DG 2 1_555 B O2 DC 10 F DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 E DG 2 1_555 B N4 DC 10 F DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 3 E DT 3 1_555 B N1 DA 9 F DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 3 E DT 3 1_555 B N6 DA 9 F DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 4 E DA 4 1_555 B N3 DT 8 F DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 4 E DA 4 1_555 B O4 DT 8 F DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 5 E DG 5 1_555 B N3 DC 7 F DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 5 E DG 5 1_555 B O2 DC 7 F DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 5 E DG 5 1_555 B N4 DC 7 F DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 6 E DA 6 1_555 B N3 DT 6 F DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 6 E DA 6 1_555 B O4 DT 6 F DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 7 E DC 7 1_555 B N1 8OG 5 F 8OG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 7 E DC 7 1_555 B O6 8OG 5 F 8OG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 7 E DC 7 1_555 B N2 8OG 5 F 8OG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 9 E DT 9 1_555 B N1 DA 3 F DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 9 E DT 9 1_555 B N6 DA 3 F DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 10 E DG 10 1_555 B N3 DC 2 F DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 10 E DG 10 1_555 B O2 DC 2 F DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 10 E DG 10 1_555 B N4 DC 2 F DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DG 11 E DG 11 1_555 B N3 DC 1 F DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 DG 11 E DG 11 1_555 B O2 DC 1 F DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 DG 11 E DG 11 1_555 B N4 DC 1 F DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 318 n n C1 C2 GOL sing 319 n n C1 H11 GOL sing 320 n n C1 H12 GOL sing 321 n n O1 HO1 GOL sing 322 n n C2 O2 GOL sing 323 n n C2 C3 GOL sing 324 n n C2 H2 GOL sing 325 n n O2 HO2 GOL sing 326 n n C3 O3 GOL sing 327 n n C3 H31 GOL sing 328 n n C3 H32 GOL sing 329 n n O3 HO3 GOL sing 330 n n # _atom_sites.entry_id 2I5W _atom_sites.fract_transf_matrix[1][1] 0.010926 _atom_sites.fract_transf_matrix[1][2] 0.006308 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA F 1 61 1 CA CA . E 4 CA A 1 324 2 CA CA . F 5 GOL A 1 325 1 GOL GOL . G 6 HOH E 1 23 23 HOH HOH . H 6 HOH F 1 62 29 HOH HOH . I 6 HOH A 1 326 1 HOH HOH . I 6 HOH A 2 327 2 HOH HOH . I 6 HOH A 3 328 3 HOH HOH . I 6 HOH A 4 329 4 HOH HOH . I 6 HOH A 5 330 5 HOH HOH . I 6 HOH A 6 331 7 HOH HOH . I 6 HOH A 7 332 8 HOH HOH . I 6 HOH A 8 333 9 HOH HOH . I 6 HOH A 9 334 10 HOH HOH . I 6 HOH A 10 335 11 HOH HOH . I 6 HOH A 11 336 12 HOH HOH . I 6 HOH A 12 337 13 HOH HOH . I 6 HOH A 13 338 14 HOH HOH . I 6 HOH A 14 339 15 HOH HOH . I 6 HOH A 15 340 16 HOH HOH . I 6 HOH A 16 341 17 HOH HOH . I 6 HOH A 17 342 18 HOH HOH . I 6 HOH A 18 343 19 HOH HOH . I 6 HOH A 19 344 20 HOH HOH . I 6 HOH A 20 345 21 HOH HOH . I 6 HOH A 21 346 22 HOH HOH . I 6 HOH A 22 347 24 HOH HOH . I 6 HOH A 23 348 25 HOH HOH . I 6 HOH A 24 349 26 HOH HOH . I 6 HOH A 25 350 27 HOH HOH . I 6 HOH A 26 351 28 HOH HOH . I 6 HOH A 27 352 30 HOH HOH . I 6 HOH A 28 353 31 HOH HOH . I 6 HOH A 29 354 32 HOH HOH . I 6 HOH A 30 355 33 HOH HOH . I 6 HOH A 31 356 34 HOH HOH . I 6 HOH A 32 357 35 HOH HOH . I 6 HOH A 33 358 37 HOH HOH . I 6 HOH A 34 359 38 HOH HOH . I 6 HOH A 35 360 39 HOH HOH . I 6 HOH A 36 361 40 HOH HOH . I 6 HOH A 37 362 41 HOH HOH . I 6 HOH A 38 363 42 HOH HOH . I 6 HOH A 39 364 43 HOH HOH . I 6 HOH A 40 365 44 HOH HOH . I 6 HOH A 41 366 45 HOH HOH . I 6 HOH A 42 367 46 HOH HOH . I 6 HOH A 43 368 47 HOH HOH . I 6 HOH A 44 369 48 HOH HOH . I 6 HOH A 45 370 49 HOH HOH . I 6 HOH A 46 371 50 HOH HOH . I 6 HOH A 47 372 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 18.932 3.88 43.895 1 70.65 ? C1 GOL 325 A 1 HETATM 2 O O1 GOL . . . F 5 17.724 4.395 44.824 1 70.34 ? O1 GOL 325 A 1 HETATM 3 C C2 GOL . . . F 5 18.986 3.966 42.502 1 72.2 ? C2 GOL 325 A 1 HETATM 4 O O2 GOL . . . F 5 17.78 3.725 41.95 1 73.52 ? O2 GOL 325 A 1 HETATM 5 C C3 GOL . . . F 5 20.121 4.237 42.152 1 72.51 ? C3 GOL 325 A 1 HETATM 6 O O3 GOL . . . F 5 21.654 4.575 42.226 1 65.09 ? O3 GOL 325 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 591 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #