data_2I6B # _model_server_result.job_id xf1gM2ibGUjkJ32agnYPBg _model_server_result.datetime_utc '2024-10-19 03:57:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 2I6B # _exptl.entry_id 2I6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.476 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[4-(DIMETHYLAMINO)PHENYL]-6-[(6-MORPHOLIN-4-YLPYRIDIN-3-YL)ETHYNYL]PYRIMIDIN-4-AMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.54 _cell.angle_gamma 90 _cell.entry_id 2I6B _cell.length_a 71.18 _cell.length_b 58.2 _cell.length_c 89.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H24 N6 O' _chem_comp.formula_weight 400.476 _chem_comp.id 89I _chem_comp.mon_nstd_flag . _chem_comp.name 5-[4-(DIMETHYLAMINO)PHENYL]-6-[(6-MORPHOLIN-4-YLPYRIDIN-3-YL)ETHYNYL]PYRIMIDIN-4-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 89I doub 1 n y C1 N6 89I sing 2 n y C1 H1 89I sing 3 n n N2 C3 89I sing 4 n y C3 C41 89I sing 5 n n C3 C4 89I doub 6 n y C4 C8 89I sing 7 n y C4 C5 89I sing 8 n y C5 N52 89I sing 9 n n C5 N6 89I doub 10 n y C8 C13 89I doub 11 n y C8 C9 89I sing 12 n y C9 C10 89I doub 13 n y C9 H9 89I sing 14 n n C10 C11 89I sing 15 n y C10 H10 89I sing 16 n n C11 N43 89I sing 17 n n C11 C12 89I doub 18 n y C12 C13 89I sing 19 n y C12 H12 89I sing 20 n n C13 H13 89I sing 21 n n C18 N19 89I doub 22 n y C18 C23 89I sing 23 n y C18 H18 89I sing 24 n n N19 C20 89I sing 25 n y C20 N32 89I sing 26 n n C20 C21 89I doub 27 n y C21 C22 89I sing 28 n y C21 H21 89I sing 29 n n C22 C23 89I doub 30 n y C22 H22 89I sing 31 n n C23 C42 89I sing 32 n n C27 C28 89I sing 33 n n C27 N32 89I sing 34 n n C27 H271 89I sing 35 n n C27 H272 89I sing 36 n n C28 O29 89I sing 37 n n C28 H281 89I sing 38 n n C28 H282 89I sing 39 n n O29 C30 89I sing 40 n n C30 C31 89I sing 41 n n C30 H301 89I sing 42 n n C30 H302 89I sing 43 n n C31 N32 89I sing 44 n n C31 H311 89I sing 45 n n C31 H312 89I sing 46 n n C41 C42 89I trip 47 n n N43 C44 89I sing 48 n n N43 C48 89I sing 49 n n C44 H441 89I sing 50 n n C44 H442 89I sing 51 n n C44 H443 89I sing 52 n n C48 H481 89I sing 53 n n C48 H482 89I sing 54 n n C48 H483 89I sing 55 n n N52 H521 89I sing 56 n n N52 H522 89I sing 57 n n # _atom_sites.entry_id 2I6B _atom_sites.fract_transf_matrix[1][1] 0.014049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00444 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 89I A 1 500 500 89I 89I . D 2 89I B 1 500 500 89I 89I . E 3 HOH A 1 501 1 HOH HOH . E 3 HOH A 2 502 2 HOH HOH . E 3 HOH A 3 503 3 HOH HOH . E 3 HOH A 4 504 4 HOH HOH . E 3 HOH A 5 505 5 HOH HOH . E 3 HOH A 6 506 6 HOH HOH . E 3 HOH A 7 507 7 HOH HOH . E 3 HOH A 8 508 8 HOH HOH . E 3 HOH A 9 509 9 HOH HOH . E 3 HOH A 10 510 10 HOH HOH . E 3 HOH A 11 511 11 HOH HOH . E 3 HOH A 12 512 12 HOH HOH . E 3 HOH A 13 513 13 HOH HOH . E 3 HOH A 14 514 14 HOH HOH . E 3 HOH A 15 515 15 HOH HOH . E 3 HOH A 16 516 16 HOH HOH . E 3 HOH A 17 517 17 HOH HOH . E 3 HOH A 18 518 18 HOH HOH . E 3 HOH A 19 519 19 HOH HOH . E 3 HOH A 20 520 20 HOH HOH . E 3 HOH A 21 521 21 HOH HOH . E 3 HOH A 22 522 22 HOH HOH . E 3 HOH A 23 523 23 HOH HOH . E 3 HOH A 24 524 24 HOH HOH . E 3 HOH A 25 525 25 HOH HOH . E 3 HOH A 26 526 26 HOH HOH . E 3 HOH A 27 527 27 HOH HOH . E 3 HOH A 28 528 28 HOH HOH . E 3 HOH A 29 529 29 HOH HOH . E 3 HOH A 30 530 30 HOH HOH . E 3 HOH A 31 531 31 HOH HOH . E 3 HOH A 32 532 32 HOH HOH . E 3 HOH A 33 533 33 HOH HOH . E 3 HOH A 34 534 34 HOH HOH . E 3 HOH A 35 535 35 HOH HOH . E 3 HOH A 36 536 36 HOH HOH . E 3 HOH A 37 537 37 HOH HOH . E 3 HOH A 38 538 38 HOH HOH . E 3 HOH A 39 539 39 HOH HOH . E 3 HOH A 40 540 40 HOH HOH . E 3 HOH A 41 541 41 HOH HOH . E 3 HOH A 42 542 42 HOH HOH . E 3 HOH A 43 543 43 HOH HOH . E 3 HOH A 44 544 44 HOH HOH . E 3 HOH A 45 545 45 HOH HOH . E 3 HOH A 46 546 46 HOH HOH . E 3 HOH A 47 547 47 HOH HOH . E 3 HOH A 48 548 48 HOH HOH . E 3 HOH A 49 549 49 HOH HOH . E 3 HOH A 50 550 50 HOH HOH . E 3 HOH A 51 551 51 HOH HOH . E 3 HOH A 52 552 52 HOH HOH . E 3 HOH A 53 553 53 HOH HOH . E 3 HOH A 54 554 54 HOH HOH . E 3 HOH A 55 555 56 HOH HOH . E 3 HOH A 56 556 57 HOH HOH . E 3 HOH A 57 557 58 HOH HOH . E 3 HOH A 58 558 59 HOH HOH . E 3 HOH A 59 559 60 HOH HOH . E 3 HOH A 60 560 61 HOH HOH . E 3 HOH A 61 561 62 HOH HOH . E 3 HOH A 62 562 63 HOH HOH . E 3 HOH A 63 563 64 HOH HOH . E 3 HOH A 64 564 65 HOH HOH . E 3 HOH A 65 565 66 HOH HOH . E 3 HOH A 66 566 67 HOH HOH . E 3 HOH A 67 567 68 HOH HOH . E 3 HOH A 68 568 69 HOH HOH . E 3 HOH A 69 569 70 HOH HOH . E 3 HOH A 70 570 71 HOH HOH . E 3 HOH A 71 571 72 HOH HOH . E 3 HOH A 72 572 73 HOH HOH . E 3 HOH A 73 573 74 HOH HOH . E 3 HOH A 74 574 75 HOH HOH . E 3 HOH A 75 575 76 HOH HOH . E 3 HOH A 76 576 77 HOH HOH . E 3 HOH A 77 577 78 HOH HOH . E 3 HOH A 78 578 79 HOH HOH . E 3 HOH A 79 579 81 HOH HOH . E 3 HOH A 80 580 82 HOH HOH . E 3 HOH A 81 581 83 HOH HOH . E 3 HOH A 82 582 84 HOH HOH . E 3 HOH A 83 583 85 HOH HOH . E 3 HOH A 84 584 86 HOH HOH . E 3 HOH A 85 585 87 HOH HOH . E 3 HOH A 86 586 88 HOH HOH . E 3 HOH A 87 587 89 HOH HOH . E 3 HOH A 88 588 90 HOH HOH . E 3 HOH A 89 589 91 HOH HOH . E 3 HOH A 90 590 92 HOH HOH . E 3 HOH A 91 591 93 HOH HOH . E 3 HOH A 92 592 94 HOH HOH . E 3 HOH A 93 593 95 HOH HOH . E 3 HOH A 94 594 96 HOH HOH . E 3 HOH A 95 595 97 HOH HOH . E 3 HOH A 96 596 98 HOH HOH . E 3 HOH A 97 597 99 HOH HOH . E 3 HOH A 98 598 100 HOH HOH . E 3 HOH A 99 599 101 HOH HOH . E 3 HOH A 100 600 102 HOH HOH . E 3 HOH A 101 601 103 HOH HOH . E 3 HOH A 102 602 104 HOH HOH . E 3 HOH A 103 603 105 HOH HOH . E 3 HOH A 104 604 106 HOH HOH . E 3 HOH A 105 605 107 HOH HOH . E 3 HOH A 106 606 108 HOH HOH . E 3 HOH A 107 607 109 HOH HOH . E 3 HOH A 108 608 110 HOH HOH . E 3 HOH A 109 609 111 HOH HOH . E 3 HOH A 110 610 112 HOH HOH . E 3 HOH A 111 611 113 HOH HOH . E 3 HOH A 112 612 114 HOH HOH . E 3 HOH A 113 613 115 HOH HOH . E 3 HOH A 114 614 116 HOH HOH . E 3 HOH A 115 615 117 HOH HOH . E 3 HOH A 116 616 118 HOH HOH . E 3 HOH A 117 617 119 HOH HOH . E 3 HOH A 118 618 120 HOH HOH . E 3 HOH A 119 619 121 HOH HOH . E 3 HOH A 120 620 122 HOH HOH . E 3 HOH A 121 621 123 HOH HOH . E 3 HOH A 122 622 124 HOH HOH . E 3 HOH A 123 623 125 HOH HOH . E 3 HOH A 124 624 134 HOH HOH . F 3 HOH B 1 501 55 HOH HOH . F 3 HOH B 2 502 80 HOH HOH . F 3 HOH B 3 503 126 HOH HOH . F 3 HOH B 4 504 127 HOH HOH . F 3 HOH B 5 505 128 HOH HOH . F 3 HOH B 6 506 129 HOH HOH . F 3 HOH B 7 507 130 HOH HOH . F 3 HOH B 8 508 131 HOH HOH . F 3 HOH B 9 509 132 HOH HOH . F 3 HOH B 10 510 133 HOH HOH . F 3 HOH B 11 511 135 HOH HOH . F 3 HOH B 12 512 136 HOH HOH . F 3 HOH B 13 513 137 HOH HOH . F 3 HOH B 14 514 138 HOH HOH . F 3 HOH B 15 515 139 HOH HOH . F 3 HOH B 16 516 140 HOH HOH . F 3 HOH B 17 517 141 HOH HOH . F 3 HOH B 18 518 142 HOH HOH . F 3 HOH B 19 519 143 HOH HOH . F 3 HOH B 20 520 144 HOH HOH . F 3 HOH B 21 521 145 HOH HOH . F 3 HOH B 22 522 146 HOH HOH . F 3 HOH B 23 523 147 HOH HOH . F 3 HOH B 24 524 148 HOH HOH . F 3 HOH B 25 525 149 HOH HOH . F 3 HOH B 26 526 150 HOH HOH . F 3 HOH B 27 527 151 HOH HOH . F 3 HOH B 28 528 152 HOH HOH . F 3 HOH B 29 529 153 HOH HOH . F 3 HOH B 30 530 154 HOH HOH . F 3 HOH B 31 531 155 HOH HOH . F 3 HOH B 32 532 156 HOH HOH . F 3 HOH B 33 533 157 HOH HOH . F 3 HOH B 34 534 158 HOH HOH . F 3 HOH B 35 535 159 HOH HOH . F 3 HOH B 36 536 160 HOH HOH . F 3 HOH B 37 537 161 HOH HOH . F 3 HOH B 38 538 162 HOH HOH . F 3 HOH B 39 539 163 HOH HOH . F 3 HOH B 40 540 164 HOH HOH . F 3 HOH B 41 541 165 HOH HOH . F 3 HOH B 42 542 166 HOH HOH . F 3 HOH B 43 543 167 HOH HOH . F 3 HOH B 44 544 168 HOH HOH . F 3 HOH B 45 545 169 HOH HOH . F 3 HOH B 46 546 170 HOH HOH . F 3 HOH B 47 547 171 HOH HOH . F 3 HOH B 48 548 172 HOH HOH . F 3 HOH B 49 549 173 HOH HOH . F 3 HOH B 50 550 174 HOH HOH . F 3 HOH B 51 551 175 HOH HOH . F 3 HOH B 52 552 176 HOH HOH . F 3 HOH B 53 553 177 HOH HOH . F 3 HOH B 54 554 178 HOH HOH . F 3 HOH B 55 555 179 HOH HOH . F 3 HOH B 56 556 180 HOH HOH . F 3 HOH B 57 557 181 HOH HOH . F 3 HOH B 58 558 182 HOH HOH . F 3 HOH B 59 559 183 HOH HOH . F 3 HOH B 60 560 184 HOH HOH . F 3 HOH B 61 561 185 HOH HOH . F 3 HOH B 62 562 186 HOH HOH . F 3 HOH B 63 563 187 HOH HOH . F 3 HOH B 64 564 188 HOH HOH . F 3 HOH B 65 565 189 HOH HOH . F 3 HOH B 66 566 190 HOH HOH . F 3 HOH B 67 567 191 HOH HOH . F 3 HOH B 68 568 192 HOH HOH . F 3 HOH B 69 569 193 HOH HOH . F 3 HOH B 70 570 194 HOH HOH . F 3 HOH B 71 571 195 HOH HOH . F 3 HOH B 72 572 196 HOH HOH . F 3 HOH B 73 573 197 HOH HOH . F 3 HOH B 74 574 198 HOH HOH . F 3 HOH B 75 575 199 HOH HOH . F 3 HOH B 76 576 200 HOH HOH . F 3 HOH B 77 577 201 HOH HOH . F 3 HOH B 78 578 202 HOH HOH . F 3 HOH B 79 579 203 HOH HOH . F 3 HOH B 80 580 204 HOH HOH . F 3 HOH B 81 581 205 HOH HOH . F 3 HOH B 82 582 206 HOH HOH . F 3 HOH B 83 583 207 HOH HOH . F 3 HOH B 84 584 208 HOH HOH . F 3 HOH B 85 585 209 HOH HOH . F 3 HOH B 86 586 210 HOH HOH . F 3 HOH B 87 587 211 HOH HOH . F 3 HOH B 88 588 212 HOH HOH . F 3 HOH B 89 589 213 HOH HOH . F 3 HOH B 90 590 214 HOH HOH . F 3 HOH B 91 591 215 HOH HOH . F 3 HOH B 92 592 216 HOH HOH . F 3 HOH B 93 593 217 HOH HOH . F 3 HOH B 94 594 218 HOH HOH . F 3 HOH B 95 595 219 HOH HOH . F 3 HOH B 96 596 220 HOH HOH . F 3 HOH B 97 597 221 HOH HOH . F 3 HOH B 98 598 222 HOH HOH . F 3 HOH B 99 599 223 HOH HOH . F 3 HOH B 100 600 224 HOH HOH . F 3 HOH B 101 601 225 HOH HOH . F 3 HOH B 102 602 226 HOH HOH . F 3 HOH B 103 603 227 HOH HOH . F 3 HOH B 104 604 228 HOH HOH . F 3 HOH B 105 605 229 HOH HOH . F 3 HOH B 106 606 230 HOH HOH . F 3 HOH B 107 607 231 HOH HOH . F 3 HOH B 108 608 232 HOH HOH . F 3 HOH B 109 609 233 HOH HOH . F 3 HOH B 110 610 234 HOH HOH . F 3 HOH B 111 611 235 HOH HOH . F 3 HOH B 112 612 236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 89I . . . D 2 58.373 58.755 10.104 1 34.08 ? C1 89I 500 B 1 HETATM 2 N N2 89I . . . D 2 59.337 59.073 10.937 1 33.73 ? N2 89I 500 B 1 HETATM 3 C C3 89I . . . D 2 60.439 58.335 10.768 1 35.2 ? C3 89I 500 B 1 HETATM 4 C C4 89I . . . D 2 60.622 57.33 9.856 1 38.12 ? C4 89I 500 B 1 HETATM 5 C C5 89I . . . D 2 59.518 57.111 9.053 1 38.86 ? C5 89I 500 B 1 HETATM 6 N N6 89I . . . D 2 58.39 57.802 9.178 1 37.5 ? N6 89I 500 B 1 HETATM 7 C C8 89I . . . D 2 61.894 56.642 9.697 1 36.95 ? C8 89I 500 B 1 HETATM 8 C C9 89I . . . D 2 62.91 57.397 9.195 1 40.63 ? C9 89I 500 B 1 HETATM 9 C C10 89I . . . D 2 64.163 56.876 8.949 1 43.68 ? C10 89I 500 B 1 HETATM 10 C C11 89I . . . D 2 64.469 55.571 9.213 1 41.62 ? C11 89I 500 B 1 HETATM 11 C C12 89I . . . D 2 63.443 54.817 9.752 1 43.14 ? C12 89I 500 B 1 HETATM 12 C C13 89I . . . D 2 62.18 55.336 9.98 1 38.49 ? C13 89I 500 B 1 HETATM 13 C C18 89I . . . D 2 63.596 58.987 14.471 1 38.25 ? C18 89I 500 B 1 HETATM 14 N N19 89I . . . D 2 64.55 58.752 15.377 1 37.73 ? N19 89I 500 B 1 HETATM 15 C C20 89I . . . D 2 65.467 57.832 14.999 1 43.36 ? C20 89I 500 B 1 HETATM 16 C C21 89I . . . D 2 65.424 57.164 13.781 1 41.56 ? C21 89I 500 B 1 HETATM 17 C C22 89I . . . D 2 64.395 57.423 12.895 1 41.81 ? C22 89I 500 B 1 HETATM 18 C C23 89I . . . D 2 63.486 58.379 13.257 1 34.33 ? C23 89I 500 B 1 HETATM 19 C C27 89I . . . D 2 67.406 56.396 15.416 1 48.68 ? C27 89I 500 B 1 HETATM 20 C C28 89I . . . D 2 68.772 56.563 16.078 1 48.52 ? C28 89I 500 B 1 HETATM 21 O O29 89I . . . D 2 68.542 56.891 17.453 1 47.22 ? O29 89I 500 B 1 HETATM 22 C C30 89I . . . D 2 67.901 58.137 17.594 1 47.24 ? C30 89I 500 B 1 HETATM 23 C C31 89I . . . D 2 66.46 57.942 17.183 1 43.44 ? C31 89I 500 B 1 HETATM 24 N N32 89I . . . D 2 66.555 57.516 15.834 1 41.8 ? N32 89I 500 B 1 HETATM 25 C C41 89I . . . D 2 61.522 58.638 11.617 1 36.18 ? C41 89I 500 B 1 HETATM 26 C C42 89I . . . D 2 62.41 58.667 12.449 1 37.02 ? C42 89I 500 B 1 HETATM 27 N N43 89I . . . D 2 65.797 55.141 8.909 1 44.69 ? N43 89I 500 B 1 HETATM 28 C C44 89I . . . D 2 66.073 53.695 9.013 1 41.09 ? C44 89I 500 B 1 HETATM 29 C C48 89I . . . D 2 66.018 55.634 7.555 1 47 ? C48 89I 500 B 1 HETATM 30 N N52 89I . . . D 2 59.57 56.126 8.091 1 37.63 ? N52 89I 500 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #