data_2I6K # _model_server_result.job_id MMj1icIHx_MvphImrPqjMA _model_server_result.datetime_utc '2024-11-16 21:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":228}' # _entry.id 2I6K # _exptl.entry_id 2I6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 80.26 _cell.angle_beta 89.98 _cell.angle_gamma 67.95 _cell.entry_id 2I6K _cell.length_a 41.363 _cell.length_b 43.074 _cell.length_c 70.466 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,O 1 1 B,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 27 A GLU 19 1_555 A N MSE 28 A MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 28 A MSE 20 1_555 A N CYS 29 A CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C ARG 164 A ARG 156 1_555 A N MSE 165 A MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 165 A MSE 157 1_555 A N ASN 166 A ASN 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C ARG 234 A ARG 226 1_555 A N MSE 235 A MSE 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C GLU 27 B GLU 19 1_555 B N MSE 28 B MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 B C MSE 28 B MSE 20 1_555 B N CYS 29 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C ARG 164 B ARG 156 1_555 B N MSE 165 B MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 B C MSE 165 B MSE 157 1_555 B N ASN 166 B ASN 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C ARG 234 B ARG 226 1_555 B N MSE 235 B MSE 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A NE2 HIS 48 A HIS 40 1_555 C MN MN . A MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 A NE2 HIS 59 A HIS 51 1_555 C MN MN . A MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 A O CYS 94 A CYS 86 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 A NE2 HIS 96 A HIS 88 1_555 C MN MN . A MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 A OE2 GLU 105 A GLU 97 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc6 A OE1 GLU 105 A GLU 97 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? metalc ? metalc7 A OG SER 107 A SER 99 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 A OE2 GLU 123 A GLU 115 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc9 A OE1 GLU 154 A GLU 146 1_555 C MN MN . A MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 A OE2 GLU 154 A GLU 146 1_555 C MN MN . A MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc11 A OE2 GLU 156 A GLU 148 1_555 C MN MN . A MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc12 D MG MG . A MG 302 1_555 F O5P EA2 . A EA2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc13 D MG MG . A MG 302 1_555 F O2P EA2 . A EA2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc14 D MG MG . A MG 302 1_555 O O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc15 D MG MG . A MG 302 1_555 O O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc16 E MG MG . A MG 303 1_555 O O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc17 E MG MG . A MG 303 1_555 O O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc18 E MG MG . A MG 303 1_555 O O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc19 E MG MG . A MG 303 1_555 P O HOH . B HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc20 B NE2 HIS 48 B HIS 40 1_555 J MN MN . B MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc21 B NE2 HIS 59 B HIS 51 1_555 J MN MN . B MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc22 B O CYS 94 B CYS 86 1_555 K MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc23 B NE2 HIS 96 B HIS 88 1_555 J MN MN . B MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc24 B OE2 GLU 105 B GLU 97 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc25 B OG SER 107 B SER 99 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc26 B OE2 GLU 123 B GLU 115 1_555 K MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc27 B OE2 GLU 154 B GLU 146 1_555 J MN MN . B MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc28 B OE1 GLU 154 B GLU 146 1_555 J MN MN . B MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc29 B OE2 GLU 156 B GLU 148 1_555 J MN MN . B MN 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc30 K MG MG . B MG 301 1_555 M O2P EA2 . B EA2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? metalc ? metalc31 K MG MG . B MG 301 1_555 M O5P EA2 . B EA2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? metalc ? metalc32 K MG MG . B MG 301 1_555 P O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc33 K MG MG . B MG 301 1_555 P O HOH . B HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc34 L MG MG . B MG 304 1_555 P O HOH . B HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc35 L MG MG . B MG 304 1_555 P O HOH . B HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2I6K _atom_sites.fract_transf_matrix[1][1] 0.024176 _atom_sites.fract_transf_matrix[1][2] -0.009792 _atom_sites.fract_transf_matrix[1][3] 0.001808 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025048 _atom_sites.fract_transf_matrix[2][3] -0.004646 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 228 201 MN MN . D 3 MG A 1 302 302 MG MG . E 3 MG A 1 303 303 MG MG . F 4 EA2 A 1 401 401 EA2 EA2 . G 5 ACY A 1 501 501 ACY ACY . H 5 ACY A 1 502 502 ACY ACY . I 5 ACY A 1 503 503 ACY ACY . J 2 MN B 1 228 202 MN MN . K 3 MG B 1 301 301 MG MG . L 3 MG B 1 304 304 MG MG . M 4 EA2 B 1 402 402 EA2 EA2 . N 5 ACY B 1 504 504 ACY ACY . O 6 HOH A 1 504 7 HOH HOH . O 6 HOH A 2 505 13 HOH HOH . O 6 HOH A 3 506 14 HOH HOH . O 6 HOH A 4 507 18 HOH HOH . O 6 HOH A 5 508 20 HOH HOH . O 6 HOH A 6 509 22 HOH HOH . O 6 HOH A 7 510 23 HOH HOH . O 6 HOH A 8 511 24 HOH HOH . O 6 HOH A 9 512 25 HOH HOH . O 6 HOH A 10 513 32 HOH HOH . O 6 HOH A 11 514 35 HOH HOH . O 6 HOH A 12 515 36 HOH HOH . O 6 HOH A 13 516 37 HOH HOH . O 6 HOH A 14 517 40 HOH HOH . O 6 HOH A 15 518 41 HOH HOH . O 6 HOH A 16 519 43 HOH HOH . O 6 HOH A 17 520 44 HOH HOH . O 6 HOH A 18 521 48 HOH HOH . O 6 HOH A 19 522 49 HOH HOH . O 6 HOH A 20 523 53 HOH HOH . O 6 HOH A 21 524 55 HOH HOH . O 6 HOH A 22 525 56 HOH HOH . O 6 HOH A 23 526 57 HOH HOH . O 6 HOH A 24 527 60 HOH HOH . O 6 HOH A 25 528 63 HOH HOH . O 6 HOH A 26 529 65 HOH HOH . O 6 HOH A 27 530 66 HOH HOH . O 6 HOH A 28 531 67 HOH HOH . O 6 HOH A 29 532 70 HOH HOH . O 6 HOH A 30 533 71 HOH HOH . O 6 HOH A 31 534 76 HOH HOH . O 6 HOH A 32 535 77 HOH HOH . O 6 HOH A 33 536 78 HOH HOH . O 6 HOH A 34 537 87 HOH HOH . O 6 HOH A 35 538 93 HOH HOH . O 6 HOH A 36 539 94 HOH HOH . O 6 HOH A 37 540 96 HOH HOH . O 6 HOH A 38 541 97 HOH HOH . O 6 HOH A 39 542 100 HOH HOH . O 6 HOH A 40 543 102 HOH HOH . O 6 HOH A 41 544 103 HOH HOH . O 6 HOH A 42 545 104 HOH HOH . O 6 HOH A 43 546 107 HOH HOH . O 6 HOH A 44 547 116 HOH HOH . O 6 HOH A 45 548 118 HOH HOH . O 6 HOH A 46 549 122 HOH HOH . O 6 HOH A 47 550 123 HOH HOH . O 6 HOH A 48 551 126 HOH HOH . O 6 HOH A 49 552 127 HOH HOH . O 6 HOH A 50 553 131 HOH HOH . O 6 HOH A 51 554 132 HOH HOH . O 6 HOH A 52 555 133 HOH HOH . O 6 HOH A 53 556 135 HOH HOH . O 6 HOH A 54 557 136 HOH HOH . O 6 HOH A 55 558 137 HOH HOH . O 6 HOH A 56 559 138 HOH HOH . O 6 HOH A 57 560 139 HOH HOH . O 6 HOH A 58 561 140 HOH HOH . O 6 HOH A 59 562 141 HOH HOH . O 6 HOH A 60 563 146 HOH HOH . O 6 HOH A 61 564 147 HOH HOH . O 6 HOH A 62 565 148 HOH HOH . O 6 HOH A 63 566 149 HOH HOH . O 6 HOH A 64 567 156 HOH HOH . O 6 HOH A 65 568 157 HOH HOH . O 6 HOH A 66 569 158 HOH HOH . O 6 HOH A 67 570 159 HOH HOH . O 6 HOH A 68 571 160 HOH HOH . O 6 HOH A 69 572 161 HOH HOH . O 6 HOH A 70 573 162 HOH HOH . O 6 HOH A 71 574 169 HOH HOH . O 6 HOH A 72 575 172 HOH HOH . O 6 HOH A 73 576 175 HOH HOH . O 6 HOH A 74 577 176 HOH HOH . O 6 HOH A 75 578 177 HOH HOH . O 6 HOH A 76 579 178 HOH HOH . P 6 HOH B 1 505 5 HOH HOH . P 6 HOH B 2 506 8 HOH HOH . P 6 HOH B 3 507 9 HOH HOH . P 6 HOH B 4 508 11 HOH HOH . P 6 HOH B 5 509 12 HOH HOH . P 6 HOH B 6 510 17 HOH HOH . P 6 HOH B 7 511 19 HOH HOH . P 6 HOH B 8 512 26 HOH HOH . P 6 HOH B 9 513 27 HOH HOH . P 6 HOH B 10 514 28 HOH HOH . P 6 HOH B 11 515 29 HOH HOH . P 6 HOH B 12 516 31 HOH HOH . P 6 HOH B 13 517 33 HOH HOH . P 6 HOH B 14 518 34 HOH HOH . P 6 HOH B 15 519 38 HOH HOH . P 6 HOH B 16 520 42 HOH HOH . P 6 HOH B 17 521 50 HOH HOH . P 6 HOH B 18 522 51 HOH HOH . P 6 HOH B 19 523 59 HOH HOH . P 6 HOH B 20 524 61 HOH HOH . P 6 HOH B 21 525 62 HOH HOH . P 6 HOH B 22 526 68 HOH HOH . P 6 HOH B 23 527 69 HOH HOH . P 6 HOH B 24 528 72 HOH HOH . P 6 HOH B 25 529 75 HOH HOH . P 6 HOH B 26 530 79 HOH HOH . P 6 HOH B 27 531 81 HOH HOH . P 6 HOH B 28 532 82 HOH HOH . P 6 HOH B 29 533 83 HOH HOH . P 6 HOH B 30 534 84 HOH HOH . P 6 HOH B 31 535 86 HOH HOH . P 6 HOH B 32 536 88 HOH HOH . P 6 HOH B 33 537 89 HOH HOH . P 6 HOH B 34 538 90 HOH HOH . P 6 HOH B 35 539 91 HOH HOH . P 6 HOH B 36 540 92 HOH HOH . P 6 HOH B 37 541 95 HOH HOH . P 6 HOH B 38 542 101 HOH HOH . P 6 HOH B 39 543 108 HOH HOH . P 6 HOH B 40 544 112 HOH HOH . P 6 HOH B 41 545 117 HOH HOH . P 6 HOH B 42 546 120 HOH HOH . P 6 HOH B 43 547 124 HOH HOH . P 6 HOH B 44 548 125 HOH HOH . P 6 HOH B 45 549 128 HOH HOH . P 6 HOH B 46 550 129 HOH HOH . P 6 HOH B 47 551 130 HOH HOH . P 6 HOH B 48 552 134 HOH HOH . P 6 HOH B 49 553 142 HOH HOH . P 6 HOH B 50 554 143 HOH HOH . P 6 HOH B 51 555 144 HOH HOH . P 6 HOH B 52 556 145 HOH HOH . P 6 HOH B 53 557 150 HOH HOH . P 6 HOH B 54 558 151 HOH HOH . P 6 HOH B 55 559 152 HOH HOH . P 6 HOH B 56 560 153 HOH HOH . P 6 HOH B 57 561 154 HOH HOH . P 6 HOH B 58 562 155 HOH HOH . P 6 HOH B 59 563 163 HOH HOH . P 6 HOH B 60 564 165 HOH HOH . P 6 HOH B 61 565 166 HOH HOH . P 6 HOH B 62 566 167 HOH HOH . P 6 HOH B 63 567 168 HOH HOH . P 6 HOH B 64 568 174 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.156 _atom_site.Cartn_y -4.118 _atom_site.Cartn_z -30.091 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 228 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #