data_2I6T # _model_server_result.job_id RhDxvy-MgwKRHFsaHvGZsw _model_server_result.datetime_utc '2024-10-13 19:21:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":10}' # _entry.id 2I6T # _exptl.entry_id 2I6T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I6T _cell.length_a 53.088 _cell.length_b 98.912 _cell.length_c 126.753 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 53.088 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 L N N ? 3 M N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2I6T _atom_sites.fract_transf_matrix[1][1] 0.018837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1 1 SO4 SO4 . D 2 SO4 A 1 4 4 SO4 SO4 . E 3 GOL A 1 6 6 GOL GOL . F 3 GOL A 1 7 7 GOL GOL . G 3 GOL A 1 9 9 GOL GOL . H 3 GOL A 1 10 10 GOL GOL . I 3 GOL A 1 11 11 GOL GOL . J 2 SO4 B 1 2 2 SO4 SO4 . K 2 SO4 B 1 3 3 SO4 SO4 . L 3 GOL B 1 5 5 GOL GOL . M 3 GOL B 1 8 8 GOL GOL . N 4 HOH A 1 472 12 HOH HOH . N 4 HOH A 2 473 14 HOH HOH . N 4 HOH A 3 474 15 HOH HOH . N 4 HOH A 4 475 16 HOH HOH . N 4 HOH A 5 476 17 HOH HOH . N 4 HOH A 6 477 19 HOH HOH . N 4 HOH A 7 478 20 HOH HOH . N 4 HOH A 8 479 21 HOH HOH . N 4 HOH A 9 480 24 HOH HOH . N 4 HOH A 10 481 25 HOH HOH . N 4 HOH A 11 482 34 HOH HOH . N 4 HOH A 12 483 35 HOH HOH . N 4 HOH A 13 484 37 HOH HOH . N 4 HOH A 14 485 38 HOH HOH . N 4 HOH A 15 486 39 HOH HOH . N 4 HOH A 16 487 40 HOH HOH . N 4 HOH A 17 488 41 HOH HOH . N 4 HOH A 18 489 42 HOH HOH . N 4 HOH A 19 490 43 HOH HOH . N 4 HOH A 20 491 45 HOH HOH . N 4 HOH A 21 492 50 HOH HOH . N 4 HOH A 22 493 52 HOH HOH . N 4 HOH A 23 494 54 HOH HOH . N 4 HOH A 24 495 56 HOH HOH . N 4 HOH A 25 496 57 HOH HOH . N 4 HOH A 26 497 58 HOH HOH . N 4 HOH A 27 498 61 HOH HOH . N 4 HOH A 28 499 63 HOH HOH . N 4 HOH A 29 500 65 HOH HOH . N 4 HOH A 30 501 66 HOH HOH . N 4 HOH A 31 502 68 HOH HOH . N 4 HOH A 32 503 71 HOH HOH . N 4 HOH A 33 504 72 HOH HOH . N 4 HOH A 34 505 73 HOH HOH . N 4 HOH A 35 506 75 HOH HOH . N 4 HOH A 36 507 78 HOH HOH . N 4 HOH A 37 508 79 HOH HOH . N 4 HOH A 38 509 80 HOH HOH . N 4 HOH A 39 510 81 HOH HOH . N 4 HOH A 40 511 82 HOH HOH . N 4 HOH A 41 512 84 HOH HOH . N 4 HOH A 42 513 88 HOH HOH . N 4 HOH A 43 514 89 HOH HOH . N 4 HOH A 44 515 90 HOH HOH . N 4 HOH A 45 516 91 HOH HOH . N 4 HOH A 46 517 94 HOH HOH . N 4 HOH A 47 518 95 HOH HOH . N 4 HOH A 48 519 96 HOH HOH . N 4 HOH A 49 520 98 HOH HOH . N 4 HOH A 50 521 99 HOH HOH . N 4 HOH A 51 522 103 HOH HOH . N 4 HOH A 52 523 106 HOH HOH . N 4 HOH A 53 524 107 HOH HOH . N 4 HOH A 54 525 109 HOH HOH . N 4 HOH A 55 526 110 HOH HOH . N 4 HOH A 56 527 111 HOH HOH . N 4 HOH A 57 528 112 HOH HOH . N 4 HOH A 58 529 113 HOH HOH . N 4 HOH A 59 530 117 HOH HOH . N 4 HOH A 60 531 118 HOH HOH . N 4 HOH A 61 532 121 HOH HOH . N 4 HOH A 62 533 123 HOH HOH . N 4 HOH A 63 534 124 HOH HOH . N 4 HOH A 64 535 127 HOH HOH . N 4 HOH A 65 536 128 HOH HOH . N 4 HOH A 66 537 130 HOH HOH . N 4 HOH A 67 538 134 HOH HOH . N 4 HOH A 68 539 135 HOH HOH . N 4 HOH A 69 540 138 HOH HOH . N 4 HOH A 70 541 139 HOH HOH . N 4 HOH A 71 542 141 HOH HOH . N 4 HOH A 72 543 143 HOH HOH . N 4 HOH A 73 544 145 HOH HOH . N 4 HOH A 74 545 146 HOH HOH . N 4 HOH A 75 546 147 HOH HOH . N 4 HOH A 76 547 149 HOH HOH . N 4 HOH A 77 548 150 HOH HOH . N 4 HOH A 78 549 153 HOH HOH . N 4 HOH A 79 550 154 HOH HOH . N 4 HOH A 80 551 155 HOH HOH . N 4 HOH A 81 552 158 HOH HOH . N 4 HOH A 82 553 159 HOH HOH . N 4 HOH A 83 554 163 HOH HOH . N 4 HOH A 84 555 165 HOH HOH . N 4 HOH A 85 556 167 HOH HOH . N 4 HOH A 86 557 169 HOH HOH . N 4 HOH A 87 558 170 HOH HOH . N 4 HOH A 88 559 173 HOH HOH . N 4 HOH A 89 560 177 HOH HOH . N 4 HOH A 90 561 178 HOH HOH . N 4 HOH A 91 562 179 HOH HOH . N 4 HOH A 92 563 182 HOH HOH . N 4 HOH A 93 564 186 HOH HOH . N 4 HOH A 94 565 187 HOH HOH . N 4 HOH A 95 566 189 HOH HOH . N 4 HOH A 96 567 190 HOH HOH . N 4 HOH A 97 568 192 HOH HOH . N 4 HOH A 98 569 193 HOH HOH . N 4 HOH A 99 570 195 HOH HOH . N 4 HOH A 100 571 196 HOH HOH . N 4 HOH A 101 572 197 HOH HOH . N 4 HOH A 102 573 199 HOH HOH . N 4 HOH A 103 574 200 HOH HOH . N 4 HOH A 104 575 202 HOH HOH . N 4 HOH A 105 576 204 HOH HOH . N 4 HOH A 106 577 206 HOH HOH . N 4 HOH A 107 578 212 HOH HOH . N 4 HOH A 108 579 213 HOH HOH . N 4 HOH A 109 580 214 HOH HOH . N 4 HOH A 110 581 216 HOH HOH . N 4 HOH A 111 582 217 HOH HOH . N 4 HOH A 112 583 218 HOH HOH . N 4 HOH A 113 584 221 HOH HOH . N 4 HOH A 114 585 226 HOH HOH . N 4 HOH A 115 586 227 HOH HOH . N 4 HOH A 116 587 231 HOH HOH . N 4 HOH A 117 588 232 HOH HOH . N 4 HOH A 118 589 234 HOH HOH . N 4 HOH A 119 590 235 HOH HOH . N 4 HOH A 120 591 237 HOH HOH . N 4 HOH A 121 592 240 HOH HOH . N 4 HOH A 122 593 241 HOH HOH . N 4 HOH A 123 594 245 HOH HOH . N 4 HOH A 124 595 246 HOH HOH . N 4 HOH A 125 596 247 HOH HOH . N 4 HOH A 126 597 248 HOH HOH . N 4 HOH A 127 598 249 HOH HOH . N 4 HOH A 128 599 253 HOH HOH . N 4 HOH A 129 600 256 HOH HOH . N 4 HOH A 130 601 263 HOH HOH . N 4 HOH A 131 602 264 HOH HOH . N 4 HOH A 132 603 265 HOH HOH . N 4 HOH A 133 604 267 HOH HOH . N 4 HOH A 134 605 269 HOH HOH . N 4 HOH A 135 606 270 HOH HOH . N 4 HOH A 136 607 271 HOH HOH . N 4 HOH A 137 608 277 HOH HOH . N 4 HOH A 138 609 278 HOH HOH . N 4 HOH A 139 610 279 HOH HOH . N 4 HOH A 140 611 281 HOH HOH . N 4 HOH A 141 612 282 HOH HOH . N 4 HOH A 142 613 283 HOH HOH . N 4 HOH A 143 614 284 HOH HOH . N 4 HOH A 144 615 287 HOH HOH . O 4 HOH B 1 472 13 HOH HOH . O 4 HOH B 2 473 18 HOH HOH . O 4 HOH B 3 474 22 HOH HOH . O 4 HOH B 4 475 23 HOH HOH . O 4 HOH B 5 476 26 HOH HOH . O 4 HOH B 6 477 27 HOH HOH . O 4 HOH B 7 478 28 HOH HOH . O 4 HOH B 8 479 29 HOH HOH . O 4 HOH B 9 480 30 HOH HOH . O 4 HOH B 10 481 31 HOH HOH . O 4 HOH B 11 482 32 HOH HOH . O 4 HOH B 12 483 33 HOH HOH . O 4 HOH B 13 484 36 HOH HOH . O 4 HOH B 14 485 44 HOH HOH . O 4 HOH B 15 486 46 HOH HOH . O 4 HOH B 16 487 47 HOH HOH . O 4 HOH B 17 488 48 HOH HOH . O 4 HOH B 18 489 49 HOH HOH . O 4 HOH B 19 490 51 HOH HOH . O 4 HOH B 20 491 53 HOH HOH . O 4 HOH B 21 492 55 HOH HOH . O 4 HOH B 22 493 59 HOH HOH . O 4 HOH B 23 494 60 HOH HOH . O 4 HOH B 24 495 62 HOH HOH . O 4 HOH B 25 496 64 HOH HOH . O 4 HOH B 26 497 67 HOH HOH . O 4 HOH B 27 498 69 HOH HOH . O 4 HOH B 28 499 70 HOH HOH . O 4 HOH B 29 500 74 HOH HOH . O 4 HOH B 30 501 76 HOH HOH . O 4 HOH B 31 502 77 HOH HOH . O 4 HOH B 32 503 83 HOH HOH . O 4 HOH B 33 504 85 HOH HOH . O 4 HOH B 34 505 86 HOH HOH . O 4 HOH B 35 506 87 HOH HOH . O 4 HOH B 36 507 92 HOH HOH . O 4 HOH B 37 508 93 HOH HOH . O 4 HOH B 38 509 97 HOH HOH . O 4 HOH B 39 510 100 HOH HOH . O 4 HOH B 40 511 101 HOH HOH . O 4 HOH B 41 512 102 HOH HOH . O 4 HOH B 42 513 104 HOH HOH . O 4 HOH B 43 514 105 HOH HOH . O 4 HOH B 44 515 108 HOH HOH . O 4 HOH B 45 516 114 HOH HOH . O 4 HOH B 46 517 115 HOH HOH . O 4 HOH B 47 518 116 HOH HOH . O 4 HOH B 48 519 119 HOH HOH . O 4 HOH B 49 520 120 HOH HOH . O 4 HOH B 50 521 122 HOH HOH . O 4 HOH B 51 522 125 HOH HOH . O 4 HOH B 52 523 126 HOH HOH . O 4 HOH B 53 524 129 HOH HOH . O 4 HOH B 54 525 131 HOH HOH . O 4 HOH B 55 526 132 HOH HOH . O 4 HOH B 56 527 133 HOH HOH . O 4 HOH B 57 528 136 HOH HOH . O 4 HOH B 58 529 137 HOH HOH . O 4 HOH B 59 530 140 HOH HOH . O 4 HOH B 60 531 142 HOH HOH . O 4 HOH B 61 532 144 HOH HOH . O 4 HOH B 62 533 148 HOH HOH . O 4 HOH B 63 534 151 HOH HOH . O 4 HOH B 64 535 152 HOH HOH . O 4 HOH B 65 536 156 HOH HOH . O 4 HOH B 66 537 157 HOH HOH . O 4 HOH B 67 538 160 HOH HOH . O 4 HOH B 68 539 161 HOH HOH . O 4 HOH B 69 540 162 HOH HOH . O 4 HOH B 70 541 164 HOH HOH . O 4 HOH B 71 542 166 HOH HOH . O 4 HOH B 72 543 168 HOH HOH . O 4 HOH B 73 544 171 HOH HOH . O 4 HOH B 74 545 172 HOH HOH . O 4 HOH B 75 546 174 HOH HOH . O 4 HOH B 76 547 175 HOH HOH . O 4 HOH B 77 548 176 HOH HOH . O 4 HOH B 78 549 180 HOH HOH . O 4 HOH B 79 550 181 HOH HOH . O 4 HOH B 80 551 183 HOH HOH . O 4 HOH B 81 552 184 HOH HOH . O 4 HOH B 82 553 185 HOH HOH . O 4 HOH B 83 554 188 HOH HOH . O 4 HOH B 84 555 191 HOH HOH . O 4 HOH B 85 556 194 HOH HOH . O 4 HOH B 86 557 198 HOH HOH . O 4 HOH B 87 558 201 HOH HOH . O 4 HOH B 88 559 203 HOH HOH . O 4 HOH B 89 560 205 HOH HOH . O 4 HOH B 90 561 207 HOH HOH . O 4 HOH B 91 562 208 HOH HOH . O 4 HOH B 92 563 209 HOH HOH . O 4 HOH B 93 564 210 HOH HOH . O 4 HOH B 94 565 211 HOH HOH . O 4 HOH B 95 566 215 HOH HOH . O 4 HOH B 96 567 219 HOH HOH . O 4 HOH B 97 568 220 HOH HOH . O 4 HOH B 98 569 222 HOH HOH . O 4 HOH B 99 570 223 HOH HOH . O 4 HOH B 100 571 224 HOH HOH . O 4 HOH B 101 572 225 HOH HOH . O 4 HOH B 102 573 228 HOH HOH . O 4 HOH B 103 574 229 HOH HOH . O 4 HOH B 104 575 230 HOH HOH . O 4 HOH B 105 576 233 HOH HOH . O 4 HOH B 106 577 236 HOH HOH . O 4 HOH B 107 578 238 HOH HOH . O 4 HOH B 108 579 239 HOH HOH . O 4 HOH B 109 580 242 HOH HOH . O 4 HOH B 110 581 243 HOH HOH . O 4 HOH B 111 582 244 HOH HOH . O 4 HOH B 112 583 250 HOH HOH . O 4 HOH B 113 584 251 HOH HOH . O 4 HOH B 114 585 252 HOH HOH . O 4 HOH B 115 586 254 HOH HOH . O 4 HOH B 116 587 255 HOH HOH . O 4 HOH B 117 588 257 HOH HOH . O 4 HOH B 118 589 258 HOH HOH . O 4 HOH B 119 590 259 HOH HOH . O 4 HOH B 120 591 260 HOH HOH . O 4 HOH B 121 592 261 HOH HOH . O 4 HOH B 122 593 262 HOH HOH . O 4 HOH B 123 594 266 HOH HOH . O 4 HOH B 124 595 268 HOH HOH . O 4 HOH B 125 596 272 HOH HOH . O 4 HOH B 126 597 273 HOH HOH . O 4 HOH B 127 598 274 HOH HOH . O 4 HOH B 128 599 275 HOH HOH . O 4 HOH B 129 600 276 HOH HOH . O 4 HOH B 130 601 280 HOH HOH . O 4 HOH B 131 602 285 HOH HOH . O 4 HOH B 132 603 286 HOH HOH . O 4 HOH B 133 604 288 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 32.204 21.734 85.699 1 32.82 ? C1 GOL 10 A 1 HETATM 2 O O1 GOL . . . H 3 32.503 22.965 86.321 1 36.23 ? O1 GOL 10 A 1 HETATM 3 C C2 GOL . . . H 3 33.207 21.474 84.582 1 35.74 ? C2 GOL 10 A 1 HETATM 4 O O2 GOL . . . H 3 34.1 20.451 84.983 1 40.52 ? O2 GOL 10 A 1 HETATM 5 C C3 GOL . . . H 3 32.453 20.964 83.372 1 33.87 ? C3 GOL 10 A 1 HETATM 6 O O3 GOL . . . H 3 31.67 21.993 82.861 1 27.86 ? O3 GOL 10 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #