data_2I6Z # _model_server_result.job_id ZhS5CLrEH-Hkwo7gKW5DLg _model_server_result.datetime_utc '2024-11-27 01:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i6z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 2I6Z # _exptl.entry_id 2I6Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I6Z _cell.length_a 77.45 _cell.length_b 77.45 _cell.length_c 37.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I6Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A ND1 HIS 15 A HIS 15 1_555 B PT1 CPT . A CPT 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 93 n n S C1 DMS sing 94 n n S C2 DMS sing 95 n n C1 H11 DMS sing 96 n n C1 H12 DMS sing 97 n n C1 H13 DMS sing 98 n n C2 H21 DMS sing 99 n n C2 H22 DMS sing 100 n n C2 H23 DMS sing 101 n n # _atom_sites.entry_id 2I6Z _atom_sites.fract_transf_matrix[1][1] 0.012912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CPT A 1 300 300 CPT CPT . C 3 CL A 1 500 500 CL CL . D 4 DMS A 1 400 400 DMS DMS . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 4 HOH HOH . E 5 HOH A 4 504 5 HOH HOH . E 5 HOH A 5 505 6 HOH HOH . E 5 HOH A 6 506 7 HOH HOH . E 5 HOH A 7 507 8 HOH HOH . E 5 HOH A 8 508 9 HOH HOH . E 5 HOH A 9 509 10 HOH HOH . E 5 HOH A 10 510 11 HOH HOH . E 5 HOH A 11 511 12 HOH HOH . E 5 HOH A 12 512 13 HOH HOH . E 5 HOH A 13 513 14 HOH HOH . E 5 HOH A 14 514 15 HOH HOH . E 5 HOH A 15 515 16 HOH HOH . E 5 HOH A 16 516 17 HOH HOH . E 5 HOH A 17 517 18 HOH HOH . E 5 HOH A 18 518 19 HOH HOH . E 5 HOH A 19 519 20 HOH HOH . E 5 HOH A 20 520 21 HOH HOH . E 5 HOH A 21 521 22 HOH HOH . E 5 HOH A 22 522 23 HOH HOH . E 5 HOH A 23 523 24 HOH HOH . E 5 HOH A 24 524 25 HOH HOH . E 5 HOH A 25 525 26 HOH HOH . E 5 HOH A 26 526 27 HOH HOH . E 5 HOH A 27 527 28 HOH HOH . E 5 HOH A 28 528 29 HOH HOH . E 5 HOH A 29 529 30 HOH HOH . E 5 HOH A 30 530 31 HOH HOH . E 5 HOH A 31 531 32 HOH HOH . E 5 HOH A 32 532 33 HOH HOH . E 5 HOH A 33 533 35 HOH HOH . E 5 HOH A 34 534 36 HOH HOH . E 5 HOH A 35 535 37 HOH HOH . E 5 HOH A 36 536 38 HOH HOH . E 5 HOH A 37 537 39 HOH HOH . E 5 HOH A 38 538 40 HOH HOH . E 5 HOH A 39 539 41 HOH HOH . E 5 HOH A 40 540 42 HOH HOH . E 5 HOH A 41 541 43 HOH HOH . E 5 HOH A 42 542 44 HOH HOH . E 5 HOH A 43 543 45 HOH HOH . E 5 HOH A 44 544 46 HOH HOH . E 5 HOH A 45 545 48 HOH HOH . E 5 HOH A 46 546 49 HOH HOH . E 5 HOH A 47 547 50 HOH HOH . E 5 HOH A 48 548 51 HOH HOH . E 5 HOH A 49 549 52 HOH HOH . E 5 HOH A 50 550 53 HOH HOH . E 5 HOH A 51 551 54 HOH HOH . E 5 HOH A 52 552 55 HOH HOH . E 5 HOH A 53 553 56 HOH HOH . E 5 HOH A 54 554 57 HOH HOH . E 5 HOH A 55 555 58 HOH HOH . E 5 HOH A 56 556 59 HOH HOH . E 5 HOH A 57 557 60 HOH HOH . E 5 HOH A 58 558 61 HOH HOH . E 5 HOH A 59 559 62 HOH HOH . E 5 HOH A 60 560 63 HOH HOH . E 5 HOH A 61 561 64 HOH HOH . E 5 HOH A 62 562 65 HOH HOH . E 5 HOH A 63 563 66 HOH HOH . E 5 HOH A 64 564 67 HOH HOH . E 5 HOH A 65 565 68 HOH HOH . E 5 HOH A 66 566 69 HOH HOH . E 5 HOH A 67 567 70 HOH HOH . E 5 HOH A 68 568 71 HOH HOH . E 5 HOH A 69 569 72 HOH HOH . E 5 HOH A 70 570 73 HOH HOH . E 5 HOH A 71 571 74 HOH HOH . E 5 HOH A 72 572 75 HOH HOH . E 5 HOH A 73 573 76 HOH HOH . E 5 HOH A 74 574 77 HOH HOH . E 5 HOH A 75 575 78 HOH HOH . E 5 HOH A 76 576 79 HOH HOH . E 5 HOH A 77 577 80 HOH HOH . E 5 HOH A 78 578 81 HOH HOH . E 5 HOH A 79 579 82 HOH HOH . E 5 HOH A 80 580 83 HOH HOH . E 5 HOH A 81 581 84 HOH HOH . E 5 HOH A 82 582 85 HOH HOH . E 5 HOH A 83 583 86 HOH HOH . E 5 HOH A 84 584 87 HOH HOH . E 5 HOH A 85 585 88 HOH HOH . E 5 HOH A 86 586 89 HOH HOH . E 5 HOH A 87 587 90 HOH HOH . E 5 HOH A 88 588 91 HOH HOH . E 5 HOH A 89 589 92 HOH HOH . E 5 HOH A 90 590 93 HOH HOH . E 5 HOH A 91 591 94 HOH HOH . E 5 HOH A 92 592 95 HOH HOH . E 5 HOH A 93 593 96 HOH HOH . E 5 HOH A 94 594 97 HOH HOH . E 5 HOH A 95 595 98 HOH HOH . E 5 HOH A 96 596 99 HOH HOH . E 5 HOH A 97 597 100 HOH HOH . E 5 HOH A 98 598 101 HOH HOH . E 5 HOH A 99 599 102 HOH HOH . E 5 HOH A 100 600 103 HOH HOH . E 5 HOH A 101 601 104 HOH HOH . E 5 HOH A 102 602 105 HOH HOH . E 5 HOH A 103 603 106 HOH HOH . E 5 HOH A 104 604 107 HOH HOH . E 5 HOH A 105 605 108 HOH HOH . E 5 HOH A 106 606 109 HOH HOH . E 5 HOH A 107 607 111 HOH HOH . E 5 HOH A 108 608 112 HOH HOH . E 5 HOH A 109 609 113 HOH HOH . E 5 HOH A 110 610 115 HOH HOH . E 5 HOH A 111 611 116 HOH HOH . E 5 HOH A 112 612 117 HOH HOH . E 5 HOH A 113 613 118 HOH HOH . E 5 HOH A 114 614 119 HOH HOH . E 5 HOH A 115 615 120 HOH HOH . E 5 HOH A 116 616 121 HOH HOH . E 5 HOH A 117 617 122 HOH HOH . E 5 HOH A 118 618 124 HOH HOH . E 5 HOH A 119 619 125 HOH HOH . E 5 HOH A 120 620 126 HOH HOH . E 5 HOH A 121 621 127 HOH HOH . E 5 HOH A 122 622 128 HOH HOH . E 5 HOH A 123 623 129 HOH HOH . E 5 HOH A 124 624 130 HOH HOH . E 5 HOH A 125 625 131 HOH HOH . E 5 HOH A 126 626 133 HOH HOH . E 5 HOH A 127 627 134 HOH HOH . E 5 HOH A 128 628 135 HOH HOH . E 5 HOH A 129 629 136 HOH HOH . E 5 HOH A 130 630 138 HOH HOH . E 5 HOH A 131 631 139 HOH HOH . E 5 HOH A 132 632 140 HOH HOH . E 5 HOH A 133 633 141 HOH HOH . E 5 HOH A 134 634 143 HOH HOH . E 5 HOH A 135 635 144 HOH HOH . E 5 HOH A 136 636 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 2.88 22.337 24.351 1 28.07 ? S DMS 400 A 1 HETATM 2 O O DMS . . . D 4 4.234 23.238 23.582 1 27.01 ? O DMS 400 A 1 HETATM 3 C C1 DMS . . . D 4 3.506 20.854 25.176 1 26.12 ? C1 DMS 400 A 1 HETATM 4 C C2 DMS . . . D 4 2.335 23.207 25.841 1 26.49 ? C2 DMS 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #