data_2I8C # _model_server_result.job_id DOHeno-Zy95YVqd_124ddA _model_server_result.datetime_utc '2024-12-01 10:32:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":400}' # _entry.id 2I8C # _exptl.entry_id 2I8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.05 _cell.angle_gamma 90 _cell.entry_id 2I8C _cell.length_a 67.802 _cell.length_b 66.972 _cell.length_c 78.992 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE2 GLU 306 B GLU 306 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 G O2A ADP . B ADP 400 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc3 G O2B ADP . B ADP 400 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2I8C _atom_sites.fract_transf_matrix[1][1] 0.014749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001563 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 401 SO4 SO4 . D 3 ADP A 1 400 400 ADP ADP . E 2 SO4 B 1 401 401 SO4 SO4 . F 4 MG B 1 402 402 MG MG . G 3 ADP B 1 400 400 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 3 23.501 13.003 29.209 1 74.56 ? PB ADP 400 B 1 HETATM 2 O O1B ADP . . . G 3 23.521 12.181 27.939 1 73.97 ? O1B ADP 400 B 1 HETATM 3 O O2B ADP . . . G 3 24.674 12.759 30.153 1 73.37 ? O2B ADP 400 B 1 HETATM 4 O O3B ADP . . . G 3 23.322 14.475 28.938 1 75.92 ? O3B ADP 400 B 1 HETATM 5 P PA ADP . . . G 3 21.586 12.784 31.416 1 65.5 ? PA ADP 400 B 1 HETATM 6 O O1A ADP . . . G 3 20.091 12.468 31.55 1 63.44 ? O1A ADP 400 B 1 HETATM 7 O O2A ADP . . . G 3 22.518 12.06 32.358 1 64.37 ? O2A ADP 400 B 1 HETATM 8 O O3A ADP . . . G 3 22.105 12.486 29.907 1 69.03 ? O3A ADP 400 B 1 HETATM 9 O O5' ADP . . . G 3 21.819 14.409 31.562 1 65.89 ? O5' ADP 400 B 1 HETATM 10 C C5' ADP . . . G 3 22.947 15.118 32.152 1 63.73 ? C5' ADP 400 B 1 HETATM 11 C C4' ADP . . . G 3 22.781 15.617 33.619 1 62.37 ? C4' ADP 400 B 1 HETATM 12 O O4' ADP . . . G 3 21.572 16.362 33.951 1 60.59 ? O4' ADP 400 B 1 HETATM 13 C C3' ADP . . . G 3 22.812 14.419 34.564 1 62.58 ? C3' ADP 400 B 1 HETATM 14 O O3' ADP . . . G 3 24.149 14.202 35.063 1 63.25 ? O3' ADP 400 B 1 HETATM 15 C C2' ADP . . . G 3 21.746 14.682 35.619 1 59.68 ? C2' ADP 400 B 1 HETATM 16 O O2' ADP . . . G 3 22.412 14.765 36.856 1 61.71 ? O2' ADP 400 B 1 HETATM 17 C C1' ADP . . . G 3 21.003 15.964 35.219 1 56.16 ? C1' ADP 400 B 1 HETATM 18 N N9 ADP . . . G 3 19.582 15.556 35.075 1 54.99 ? N9 ADP 400 B 1 HETATM 19 C C8 ADP . . . G 3 19.097 14.986 33.944 1 55.03 ? C8 ADP 400 B 1 HETATM 20 N N7 ADP . . . G 3 17.778 14.66 34.068 1 54.44 ? N7 ADP 400 B 1 HETATM 21 C C5 ADP . . . G 3 17.38 15.009 35.291 1 53.34 ? C5 ADP 400 B 1 HETATM 22 C C6 ADP . . . G 3 16.117 14.921 36.051 1 53.76 ? C6 ADP 400 B 1 HETATM 23 N N6 ADP . . . G 3 15.019 14.415 35.497 1 54.6 ? N6 ADP 400 B 1 HETATM 24 N N1 ADP . . . G 3 16.078 15.372 37.318 1 54.26 ? N1 ADP 400 B 1 HETATM 25 C C2 ADP . . . G 3 17.19 15.893 37.884 1 54.74 ? C2 ADP 400 B 1 HETATM 26 N N3 ADP . . . G 3 18.382 16.008 37.247 1 54.88 ? N3 ADP 400 B 1 HETATM 27 C C4 ADP . . . G 3 18.564 15.6 35.959 1 54.51 ? C4 ADP 400 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #