data_2I99 # _model_server_result.job_id ijRusbwIUXzxRNVkeBmxYA _model_server_result.datetime_utc '2024-11-13 10:15:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2I99 # _exptl.entry_id 2I99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I99 _cell.length_a 70.98 _cell.length_b 90.86 _cell.length_c 101.183 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 2I99 _atom_sites.fract_transf_matrix[1][1] 0.014088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 502 2 NDP NAP . D 2 NDP B 1 501 1 NDP NAP . E 3 HOH A 1 503 7 HOH TIP . E 3 HOH A 2 504 8 HOH TIP . E 3 HOH A 3 505 12 HOH TIP . E 3 HOH A 4 506 13 HOH TIP . E 3 HOH A 5 507 14 HOH TIP . E 3 HOH A 6 508 16 HOH TIP . E 3 HOH A 7 509 17 HOH TIP . E 3 HOH A 8 510 18 HOH TIP . E 3 HOH A 9 511 19 HOH TIP . E 3 HOH A 10 512 22 HOH TIP . E 3 HOH A 11 513 25 HOH TIP . E 3 HOH A 12 514 26 HOH TIP . E 3 HOH A 13 515 27 HOH TIP . E 3 HOH A 14 516 28 HOH TIP . E 3 HOH A 15 517 29 HOH TIP . E 3 HOH A 16 518 31 HOH TIP . E 3 HOH A 17 519 32 HOH TIP . E 3 HOH A 18 520 33 HOH TIP . E 3 HOH A 19 521 34 HOH TIP . E 3 HOH A 20 522 35 HOH TIP . E 3 HOH A 21 523 36 HOH TIP . E 3 HOH A 22 524 39 HOH TIP . E 3 HOH A 23 525 42 HOH TIP . E 3 HOH A 24 526 44 HOH TIP . E 3 HOH A 25 527 45 HOH TIP . E 3 HOH A 26 528 50 HOH TIP . E 3 HOH A 27 529 51 HOH TIP . E 3 HOH A 28 530 52 HOH TIP . E 3 HOH A 29 531 59 HOH TIP . E 3 HOH A 30 532 60 HOH TIP . E 3 HOH A 31 533 62 HOH TIP . E 3 HOH A 32 534 64 HOH TIP . E 3 HOH A 33 535 65 HOH TIP . E 3 HOH A 34 536 67 HOH TIP . E 3 HOH A 35 537 72 HOH TIP . E 3 HOH A 36 538 76 HOH TIP . E 3 HOH A 37 539 81 HOH TIP . E 3 HOH A 38 540 82 HOH TIP . E 3 HOH A 39 541 87 HOH TIP . E 3 HOH A 40 542 88 HOH TIP . E 3 HOH A 41 543 97 HOH TIP . E 3 HOH A 42 544 100 HOH TIP . E 3 HOH A 43 545 103 HOH TIP . E 3 HOH A 44 546 106 HOH TIP . E 3 HOH A 45 547 109 HOH TIP . E 3 HOH A 46 548 113 HOH TIP . E 3 HOH A 47 549 115 HOH TIP . E 3 HOH A 48 550 117 HOH TIP . E 3 HOH A 49 551 120 HOH TIP . E 3 HOH A 50 552 122 HOH TIP . E 3 HOH A 51 553 123 HOH TIP . E 3 HOH A 52 554 125 HOH TIP . E 3 HOH A 53 555 128 HOH TIP . E 3 HOH A 54 556 131 HOH TIP . E 3 HOH A 55 557 133 HOH TIP . E 3 HOH A 56 558 136 HOH TIP . E 3 HOH A 57 559 139 HOH TIP . E 3 HOH A 58 560 142 HOH TIP . E 3 HOH A 59 561 143 HOH TIP . E 3 HOH A 60 562 147 HOH TIP . E 3 HOH A 61 563 149 HOH TIP . E 3 HOH A 62 564 150 HOH TIP . E 3 HOH A 63 565 151 HOH TIP . E 3 HOH A 64 566 154 HOH TIP . E 3 HOH A 65 567 170 HOH TIP . E 3 HOH A 66 568 176 HOH TIP . E 3 HOH A 67 569 177 HOH TIP . E 3 HOH A 68 570 179 HOH TIP . E 3 HOH A 69 571 180 HOH TIP . E 3 HOH A 70 572 188 HOH TIP . E 3 HOH A 71 573 201 HOH TIP . E 3 HOH A 72 574 202 HOH TIP . E 3 HOH A 73 575 211 HOH TIP . E 3 HOH A 74 576 222 HOH TIP . E 3 HOH A 75 577 226 HOH TIP . E 3 HOH A 76 578 231 HOH TIP . E 3 HOH A 77 579 235 HOH TIP . E 3 HOH A 78 580 236 HOH TIP . E 3 HOH A 79 581 237 HOH TIP . E 3 HOH A 80 582 239 HOH TIP . E 3 HOH A 81 583 245 HOH TIP . E 3 HOH A 82 584 250 HOH TIP . E 3 HOH A 83 585 258 HOH TIP . E 3 HOH A 84 586 261 HOH TIP . E 3 HOH A 85 587 267 HOH TIP . F 3 HOH B 1 502 1 HOH TIP . F 3 HOH B 2 503 4 HOH TIP . F 3 HOH B 3 504 5 HOH TIP . F 3 HOH B 4 505 11 HOH TIP . F 3 HOH B 5 506 21 HOH TIP . F 3 HOH B 6 507 23 HOH TIP . F 3 HOH B 7 508 24 HOH TIP . F 3 HOH B 8 509 30 HOH TIP . F 3 HOH B 9 510 41 HOH TIP . F 3 HOH B 10 511 43 HOH TIP . F 3 HOH B 11 512 46 HOH TIP . F 3 HOH B 12 513 48 HOH TIP . F 3 HOH B 13 514 53 HOH TIP . F 3 HOH B 14 515 54 HOH TIP . F 3 HOH B 15 516 55 HOH TIP . F 3 HOH B 16 517 56 HOH TIP . F 3 HOH B 17 518 57 HOH TIP . F 3 HOH B 18 519 63 HOH TIP . F 3 HOH B 19 520 68 HOH TIP . F 3 HOH B 20 521 73 HOH TIP . F 3 HOH B 21 522 74 HOH TIP . F 3 HOH B 22 523 75 HOH TIP . F 3 HOH B 23 524 77 HOH TIP . F 3 HOH B 24 525 78 HOH TIP . F 3 HOH B 25 526 84 HOH TIP . F 3 HOH B 26 527 85 HOH TIP . F 3 HOH B 27 528 92 HOH TIP . F 3 HOH B 28 529 93 HOH TIP . F 3 HOH B 29 530 94 HOH TIP . F 3 HOH B 30 531 96 HOH TIP . F 3 HOH B 31 532 108 HOH TIP . F 3 HOH B 32 533 111 HOH TIP . F 3 HOH B 33 534 121 HOH TIP . F 3 HOH B 34 535 129 HOH TIP . F 3 HOH B 35 536 135 HOH TIP . F 3 HOH B 36 537 146 HOH TIP . F 3 HOH B 37 538 153 HOH TIP . F 3 HOH B 38 539 160 HOH TIP . F 3 HOH B 39 540 165 HOH TIP . F 3 HOH B 40 541 172 HOH TIP . F 3 HOH B 41 542 173 HOH TIP . F 3 HOH B 42 543 182 HOH TIP . F 3 HOH B 43 544 184 HOH TIP . F 3 HOH B 44 545 185 HOH TIP . F 3 HOH B 45 546 189 HOH TIP . F 3 HOH B 46 547 191 HOH TIP . F 3 HOH B 47 548 197 HOH TIP . F 3 HOH B 48 549 200 HOH TIP . F 3 HOH B 49 550 203 HOH TIP . F 3 HOH B 50 551 208 HOH TIP . F 3 HOH B 51 552 209 HOH TIP . F 3 HOH B 52 553 214 HOH TIP . F 3 HOH B 53 554 215 HOH TIP . F 3 HOH B 54 555 216 HOH TIP . F 3 HOH B 55 556 218 HOH TIP . F 3 HOH B 56 557 225 HOH TIP . F 3 HOH B 57 558 241 HOH TIP . F 3 HOH B 58 559 243 HOH TIP . F 3 HOH B 59 560 247 HOH TIP . F 3 HOH B 60 561 249 HOH TIP . F 3 HOH B 61 562 255 HOH TIP . F 3 HOH B 62 563 257 HOH TIP . F 3 HOH B 63 564 259 HOH TIP . F 3 HOH B 64 565 262 HOH TIP . F 3 HOH B 65 566 263 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 2 -17.101 -20.811 47.273 1 36.24 ? PA NDP 501 B 1 HETATM 2 O O1A NDP . . . D 2 -16.113 -19.716 47.149 1 36.96 ? O1A NDP 501 B 1 HETATM 3 O O2A NDP . . . D 2 -18.431 -20.5 47.842 1 34.73 ? O2A NDP 501 B 1 HETATM 4 O O5B NDP . . . D 2 -16.433 -22.033 48.085 1 37.18 ? O5B NDP 501 B 1 HETATM 5 C C5B NDP . . . D 2 -16.43 -22.025 49.515 1 40.32 ? C5B NDP 501 B 1 HETATM 6 C C4B NDP . . . D 2 -15.84 -23.325 50.038 1 40.63 ? C4B NDP 501 B 1 HETATM 7 O O4B NDP . . . D 2 -14.478 -23.483 49.614 1 40.32 ? O4B NDP 501 B 1 HETATM 8 C C3B NDP . . . D 2 -15.807 -23.328 51.559 1 39.85 ? C3B NDP 501 B 1 HETATM 9 O O3B NDP . . . D 2 -16.698 -24.339 52.05 1 40.29 ? O3B NDP 501 B 1 HETATM 10 C C2B NDP . . . D 2 -14.375 -23.716 51.888 1 39.93 ? C2B NDP 501 B 1 HETATM 11 O O2B NDP . . . D 2 -13.593 -22.535 52.121 1 40.16 ? O2B NDP 501 B 1 HETATM 12 C C1B NDP . . . D 2 -13.939 -24.38 50.595 1 39.82 ? C1B NDP 501 B 1 HETATM 13 N N9A NDP . . . D 2 -12.462 -24.432 50.484 1 39.91 ? N9A NDP 501 B 1 HETATM 14 C C8A NDP . . . D 2 -11.706 -23.5 49.923 1 39.89 ? C8A NDP 501 B 1 HETATM 15 N N7A NDP . . . D 2 -10.434 -23.887 50.022 1 39.64 ? N7A NDP 501 B 1 HETATM 16 C C5A NDP . . . D 2 -10.419 -25.058 50.653 1 39.7 ? C5A NDP 501 B 1 HETATM 17 C C6A NDP . . . D 2 -9.489 -25.998 50.772 1 40.06 ? C6A NDP 501 B 1 HETATM 18 N N6A NDP . . . D 2 -8.367 -25.81 50.084 1 40.77 ? N6A NDP 501 B 1 HETATM 19 N N1A NDP . . . D 2 -9.834 -27.256 51.285 1 38.69 ? N1A NDP 501 B 1 HETATM 20 C C2A NDP . . . D 2 -10.954 -27.42 51.966 1 37.97 ? C2A NDP 501 B 1 HETATM 21 N N3A NDP . . . D 2 -11.927 -26.641 51.529 1 39.67 ? N3A NDP 501 B 1 HETATM 22 C C4A NDP . . . D 2 -11.667 -25.381 50.975 1 39.86 ? C4A NDP 501 B 1 HETATM 23 O O3 NDP . . . D 2 -17.298 -21.456 45.81 1 34.1 ? O3 NDP 501 B 1 HETATM 24 P PN NDP . . . D 2 -18.598 -22.327 45.429 1 29.69 ? PN NDP 501 B 1 HETATM 25 O O1N NDP . . . D 2 -19.387 -21.559 44.441 1 28.23 ? O1N NDP 501 B 1 HETATM 26 O O2N NDP . . . D 2 -19.266 -22.816 46.656 1 33.04 ? O2N NDP 501 B 1 HETATM 27 O O5D NDP . . . D 2 -17.938 -23.591 44.685 1 27.31 ? O5D NDP 501 B 1 HETATM 28 C C5D NDP . . . D 2 -17.539 -24.757 45.41 1 31 ? C5D NDP 501 B 1 HETATM 29 C C4D NDP . . . D 2 -17.07 -25.794 44.402 1 31.46 ? C4D NDP 501 B 1 HETATM 30 O O4D NDP . . . D 2 -18.055 -26.196 43.433 1 32.43 ? O4D NDP 501 B 1 HETATM 31 C C3D NDP . . . D 2 -15.723 -25.607 43.742 1 31.42 ? C3D NDP 501 B 1 HETATM 32 O O3D NDP . . . D 2 -14.924 -24.482 44.133 1 36.72 ? O3D NDP 501 B 1 HETATM 33 C C2D NDP . . . D 2 -16.107 -25.538 42.282 1 33 ? C2D NDP 501 B 1 HETATM 34 O O2D NDP . . . D 2 -16.11 -24.276 41.596 1 32.63 ? O2D NDP 501 B 1 HETATM 35 C C1D NDP . . . D 2 -17.38 -26.364 42.171 1 31.17 ? C1D NDP 501 B 1 HETATM 36 N N1N NDP . . . D 2 -18.26 -25.961 41.052 1 26.3 ? N1N NDP 501 B 1 HETATM 37 C C2N NDP . . . D 2 -18.894 -26.964 40.309 1 25.61 ? C2N NDP 501 B 1 HETATM 38 C C3N NDP . . . D 2 -20.02 -26.665 39.55 1 22.57 ? C3N NDP 501 B 1 HETATM 39 C C7N NDP . . . D 2 -20.578 -27.65 38.742 1 22.14 ? C7N NDP 501 B 1 HETATM 40 O O7N NDP . . . D 2 -21.417 -27.227 37.758 1 23.42 ? O7N NDP 501 B 1 HETATM 41 N N7N NDP . . . D 2 -20.458 -28.914 39.171 1 19.53 ? N7N NDP 501 B 1 HETATM 42 C C4N NDP . . . D 2 -20.507 -25.363 39.511 1 22.66 ? C4N NDP 501 B 1 HETATM 43 C C5N NDP . . . D 2 -19.88 -24.359 40.24 1 23.83 ? C5N NDP 501 B 1 HETATM 44 C C6N NDP . . . D 2 -18.761 -24.654 41.012 1 24.31 ? C6N NDP 501 B 1 HETATM 45 P P2B NDP . . . D 2 -13.611 -21.801 53.555 1 38.73 ? P2B NDP 501 B 1 HETATM 46 O O1X NDP . . . D 2 -12.991 -22.837 54.618 1 39.76 ? O1X NDP 501 B 1 HETATM 47 O O2X NDP . . . D 2 -12.549 -20.597 53.419 1 39.39 ? O2X NDP 501 B 1 HETATM 48 O O3X NDP . . . D 2 -14.957 -21.322 53.945 1 39.5 ? O3X NDP 501 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 88 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #