data_2I99 # _model_server_result.job_id FW1XqcCS7XkMbYnhRmGkiw _model_server_result.datetime_utc '2024-11-22 15:45:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 2I99 # _exptl.entry_id 2I99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I99 _cell.length_a 70.98 _cell.length_b 90.86 _cell.length_c 101.183 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 2I99 _atom_sites.fract_transf_matrix[1][1] 0.014088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 502 2 NDP NAP . D 2 NDP B 1 501 1 NDP NAP . E 3 HOH A 1 503 7 HOH TIP . E 3 HOH A 2 504 8 HOH TIP . E 3 HOH A 3 505 12 HOH TIP . E 3 HOH A 4 506 13 HOH TIP . E 3 HOH A 5 507 14 HOH TIP . E 3 HOH A 6 508 16 HOH TIP . E 3 HOH A 7 509 17 HOH TIP . E 3 HOH A 8 510 18 HOH TIP . E 3 HOH A 9 511 19 HOH TIP . E 3 HOH A 10 512 22 HOH TIP . E 3 HOH A 11 513 25 HOH TIP . E 3 HOH A 12 514 26 HOH TIP . E 3 HOH A 13 515 27 HOH TIP . E 3 HOH A 14 516 28 HOH TIP . E 3 HOH A 15 517 29 HOH TIP . E 3 HOH A 16 518 31 HOH TIP . E 3 HOH A 17 519 32 HOH TIP . E 3 HOH A 18 520 33 HOH TIP . E 3 HOH A 19 521 34 HOH TIP . E 3 HOH A 20 522 35 HOH TIP . E 3 HOH A 21 523 36 HOH TIP . E 3 HOH A 22 524 39 HOH TIP . E 3 HOH A 23 525 42 HOH TIP . E 3 HOH A 24 526 44 HOH TIP . E 3 HOH A 25 527 45 HOH TIP . E 3 HOH A 26 528 50 HOH TIP . E 3 HOH A 27 529 51 HOH TIP . E 3 HOH A 28 530 52 HOH TIP . E 3 HOH A 29 531 59 HOH TIP . E 3 HOH A 30 532 60 HOH TIP . E 3 HOH A 31 533 62 HOH TIP . E 3 HOH A 32 534 64 HOH TIP . E 3 HOH A 33 535 65 HOH TIP . E 3 HOH A 34 536 67 HOH TIP . E 3 HOH A 35 537 72 HOH TIP . E 3 HOH A 36 538 76 HOH TIP . E 3 HOH A 37 539 81 HOH TIP . E 3 HOH A 38 540 82 HOH TIP . E 3 HOH A 39 541 87 HOH TIP . E 3 HOH A 40 542 88 HOH TIP . E 3 HOH A 41 543 97 HOH TIP . E 3 HOH A 42 544 100 HOH TIP . E 3 HOH A 43 545 103 HOH TIP . E 3 HOH A 44 546 106 HOH TIP . E 3 HOH A 45 547 109 HOH TIP . E 3 HOH A 46 548 113 HOH TIP . E 3 HOH A 47 549 115 HOH TIP . E 3 HOH A 48 550 117 HOH TIP . E 3 HOH A 49 551 120 HOH TIP . E 3 HOH A 50 552 122 HOH TIP . E 3 HOH A 51 553 123 HOH TIP . E 3 HOH A 52 554 125 HOH TIP . E 3 HOH A 53 555 128 HOH TIP . E 3 HOH A 54 556 131 HOH TIP . E 3 HOH A 55 557 133 HOH TIP . E 3 HOH A 56 558 136 HOH TIP . E 3 HOH A 57 559 139 HOH TIP . E 3 HOH A 58 560 142 HOH TIP . E 3 HOH A 59 561 143 HOH TIP . E 3 HOH A 60 562 147 HOH TIP . E 3 HOH A 61 563 149 HOH TIP . E 3 HOH A 62 564 150 HOH TIP . E 3 HOH A 63 565 151 HOH TIP . E 3 HOH A 64 566 154 HOH TIP . E 3 HOH A 65 567 170 HOH TIP . E 3 HOH A 66 568 176 HOH TIP . E 3 HOH A 67 569 177 HOH TIP . E 3 HOH A 68 570 179 HOH TIP . E 3 HOH A 69 571 180 HOH TIP . E 3 HOH A 70 572 188 HOH TIP . E 3 HOH A 71 573 201 HOH TIP . E 3 HOH A 72 574 202 HOH TIP . E 3 HOH A 73 575 211 HOH TIP . E 3 HOH A 74 576 222 HOH TIP . E 3 HOH A 75 577 226 HOH TIP . E 3 HOH A 76 578 231 HOH TIP . E 3 HOH A 77 579 235 HOH TIP . E 3 HOH A 78 580 236 HOH TIP . E 3 HOH A 79 581 237 HOH TIP . E 3 HOH A 80 582 239 HOH TIP . E 3 HOH A 81 583 245 HOH TIP . E 3 HOH A 82 584 250 HOH TIP . E 3 HOH A 83 585 258 HOH TIP . E 3 HOH A 84 586 261 HOH TIP . E 3 HOH A 85 587 267 HOH TIP . F 3 HOH B 1 502 1 HOH TIP . F 3 HOH B 2 503 4 HOH TIP . F 3 HOH B 3 504 5 HOH TIP . F 3 HOH B 4 505 11 HOH TIP . F 3 HOH B 5 506 21 HOH TIP . F 3 HOH B 6 507 23 HOH TIP . F 3 HOH B 7 508 24 HOH TIP . F 3 HOH B 8 509 30 HOH TIP . F 3 HOH B 9 510 41 HOH TIP . F 3 HOH B 10 511 43 HOH TIP . F 3 HOH B 11 512 46 HOH TIP . F 3 HOH B 12 513 48 HOH TIP . F 3 HOH B 13 514 53 HOH TIP . F 3 HOH B 14 515 54 HOH TIP . F 3 HOH B 15 516 55 HOH TIP . F 3 HOH B 16 517 56 HOH TIP . F 3 HOH B 17 518 57 HOH TIP . F 3 HOH B 18 519 63 HOH TIP . F 3 HOH B 19 520 68 HOH TIP . F 3 HOH B 20 521 73 HOH TIP . F 3 HOH B 21 522 74 HOH TIP . F 3 HOH B 22 523 75 HOH TIP . F 3 HOH B 23 524 77 HOH TIP . F 3 HOH B 24 525 78 HOH TIP . F 3 HOH B 25 526 84 HOH TIP . F 3 HOH B 26 527 85 HOH TIP . F 3 HOH B 27 528 92 HOH TIP . F 3 HOH B 28 529 93 HOH TIP . F 3 HOH B 29 530 94 HOH TIP . F 3 HOH B 30 531 96 HOH TIP . F 3 HOH B 31 532 108 HOH TIP . F 3 HOH B 32 533 111 HOH TIP . F 3 HOH B 33 534 121 HOH TIP . F 3 HOH B 34 535 129 HOH TIP . F 3 HOH B 35 536 135 HOH TIP . F 3 HOH B 36 537 146 HOH TIP . F 3 HOH B 37 538 153 HOH TIP . F 3 HOH B 38 539 160 HOH TIP . F 3 HOH B 39 540 165 HOH TIP . F 3 HOH B 40 541 172 HOH TIP . F 3 HOH B 41 542 173 HOH TIP . F 3 HOH B 42 543 182 HOH TIP . F 3 HOH B 43 544 184 HOH TIP . F 3 HOH B 44 545 185 HOH TIP . F 3 HOH B 45 546 189 HOH TIP . F 3 HOH B 46 547 191 HOH TIP . F 3 HOH B 47 548 197 HOH TIP . F 3 HOH B 48 549 200 HOH TIP . F 3 HOH B 49 550 203 HOH TIP . F 3 HOH B 50 551 208 HOH TIP . F 3 HOH B 51 552 209 HOH TIP . F 3 HOH B 52 553 214 HOH TIP . F 3 HOH B 53 554 215 HOH TIP . F 3 HOH B 54 555 216 HOH TIP . F 3 HOH B 55 556 218 HOH TIP . F 3 HOH B 56 557 225 HOH TIP . F 3 HOH B 57 558 241 HOH TIP . F 3 HOH B 58 559 243 HOH TIP . F 3 HOH B 59 560 247 HOH TIP . F 3 HOH B 60 561 249 HOH TIP . F 3 HOH B 61 562 255 HOH TIP . F 3 HOH B 62 563 257 HOH TIP . F 3 HOH B 63 564 259 HOH TIP . F 3 HOH B 64 565 262 HOH TIP . F 3 HOH B 65 566 263 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 -20.903 -10.035 4.43 1 28.58 ? PA NDP 502 A 1 HETATM 2 O O1A NDP . . . C 2 -22.248 -10.557 4.761 1 30.82 ? O1A NDP 502 A 1 HETATM 3 O O2A NDP . . . C 2 -20.707 -8.57 4.373 1 22.07 ? O2A NDP 502 A 1 HETATM 4 O O5B NDP . . . C 2 -20.438 -10.696 3.036 1 30.23 ? O5B NDP 502 A 1 HETATM 5 C C5B NDP . . . C 2 -20.886 -10.143 1.796 1 31.38 ? C5B NDP 502 A 1 HETATM 6 C C4B NDP . . . C 2 -20.251 -10.872 0.622 1 30.75 ? C4B NDP 502 A 1 HETATM 7 O O4B NDP . . . C 2 -20.624 -12.257 0.575 1 29.59 ? O4B NDP 502 A 1 HETATM 8 C C3B NDP . . . C 2 -20.744 -10.278 -0.69 1 30.36 ? C3B NDP 502 A 1 HETATM 9 O O3B NDP . . . C 2 -19.679 -9.542 -1.308 1 34.83 ? O3B NDP 502 A 1 HETATM 10 C C2B NDP . . . C 2 -21.086 -11.493 -1.537 1 29.86 ? C2B NDP 502 A 1 HETATM 11 O O2B NDP . . . C 2 -22.504 -11.71 -1.503 1 30.38 ? O2B NDP 502 A 1 HETATM 12 C C1B NDP . . . C 2 -20.376 -12.611 -0.793 1 29.01 ? C1B NDP 502 A 1 HETATM 13 N N9A NDP . . . C 2 -20.941 -13.946 -1.097 1 26.03 ? N9A NDP 502 A 1 HETATM 14 C C8A NDP . . . C 2 -21.814 -14.585 -0.328 1 26.35 ? C8A NDP 502 A 1 HETATM 15 N N7A NDP . . . C 2 -22.009 -15.8 -0.836 1 23.38 ? N7A NDP 502 A 1 HETATM 16 C C5A NDP . . . C 2 -21.276 -15.893 -1.941 1 24.8 ? C5A NDP 502 A 1 HETATM 17 C C6A NDP . . . C 2 -20.98 -16.911 -2.742 1 24.86 ? C6A NDP 502 A 1 HETATM 18 N N6A NDP . . . C 2 -21.448 -18.102 -2.379 1 25.72 ? N6A NDP 502 A 1 HETATM 19 N N1A NDP . . . C 2 -19.951 -16.78 -3.683 1 22.78 ? N1A NDP 502 A 1 HETATM 20 C C2A NDP . . . C 2 -19.497 -15.592 -4.038 1 23.24 ? C2A NDP 502 A 1 HETATM 21 N N3A NDP . . . C 2 -19.624 -14.675 -3.091 1 24.53 ? N3A NDP 502 A 1 HETATM 22 C C4A NDP . . . C 2 -20.626 -14.745 -2.117 1 26.96 ? C4A NDP 502 A 1 HETATM 23 O O3 NDP . . . C 2 -19.856 -10.664 5.483 1 25.85 ? O3 NDP 502 A 1 HETATM 24 P PN NDP . . . C 2 -18.471 -9.938 5.875 1 26.07 ? PN NDP 502 A 1 HETATM 25 O O1N NDP . . . C 2 -18.612 -9.356 7.23 1 26.94 ? O1N NDP 502 A 1 HETATM 26 O O2N NDP . . . C 2 -18.025 -9.056 4.773 1 23.84 ? O2N NDP 502 A 1 HETATM 27 O O5D NDP . . . C 2 -17.455 -11.186 5.957 1 24.44 ? O5D NDP 502 A 1 HETATM 28 C C5D NDP . . . C 2 -16.901 -11.731 4.755 1 25.31 ? C5D NDP 502 A 1 HETATM 29 C C4D NDP . . . C 2 -16.136 -13.013 5.054 1 22.83 ? C4D NDP 502 A 1 HETATM 30 O O4D NDP . . . C 2 -14.987 -12.768 5.883 1 27.04 ? O4D NDP 502 A 1 HETATM 31 C C3D NDP . . . C 2 -16.929 -14.164 5.639 1 25.34 ? C3D NDP 502 A 1 HETATM 32 O O3D NDP . . . C 2 -16.354 -15.418 5.244 1 23.9 ? O3D NDP 502 A 1 HETATM 33 C C2D NDP . . . C 2 -16.625 -13.892 7.099 1 23.95 ? C2D NDP 502 A 1 HETATM 34 O O2D NDP . . . C 2 -16.892 -15.05 7.901 1 24.82 ? O2D NDP 502 A 1 HETATM 35 C C1D NDP . . . C 2 -15.126 -13.685 6.983 1 25.58 ? C1D NDP 502 A 1 HETATM 36 N N1N NDP . . . C 2 -14.52 -13.153 8.224 1 25.87 ? N1N NDP 502 A 1 HETATM 37 C C2N NDP . . . C 2 -13.208 -13.502 8.563 1 26.24 ? C2N NDP 502 A 1 HETATM 38 C C3N NDP . . . C 2 -12.588 -12.914 9.66 1 27.28 ? C3N NDP 502 A 1 HETATM 39 C C7N NDP . . . C 2 -11.252 -13.194 9.926 1 27.69 ? C7N NDP 502 A 1 HETATM 40 O O7N NDP . . . C 2 -10.676 -12.554 10.981 1 28.02 ? O7N NDP 502 A 1 HETATM 41 N N7N NDP . . . C 2 -10.592 -13.897 8.995 1 24.74 ? N7N NDP 502 A 1 HETATM 42 C C4N NDP . . . C 2 -13.279 -11.981 10.428 1 27.3 ? C4N NDP 502 A 1 HETATM 43 C C5N NDP . . . C 2 -14.579 -11.62 10.089 1 27.56 ? C5N NDP 502 A 1 HETATM 44 C C6N NDP . . . C 2 -15.201 -12.197 8.987 1 27.4 ? C6N NDP 502 A 1 HETATM 45 P P2B NDP . . . C 2 -23.494 -11.097 -2.618 1 27.26 ? P2B NDP 502 A 1 HETATM 46 O O1X NDP . . . C 2 -24.967 -11.233 -1.981 1 25.51 ? O1X NDP 502 A 1 HETATM 47 O O2X NDP . . . C 2 -23.178 -9.52 -2.708 1 22.96 ? O2X NDP 502 A 1 HETATM 48 O O3X NDP . . . C 2 -23.393 -11.791 -3.921 1 26.85 ? O3X NDP 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #