data_2I9F
#
_model_server_result.job_id            vUJuSP3y3m9yuGepLKjVdg 
_model_server_result.datetime_utc      '2025-04-06 03:16:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2i9f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":302}' 
#
_entry.id    2I9F 
#
_exptl.entry_id    2I9F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2I9F 
_cell.length_a            68.23 
_cell.length_b            73.23 
_cell.length_c            138.96 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2I9F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA,PQS octameric 8 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 73.23 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 33 A PHE 74 1_555 A N MSE 34 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C MSE 34 A MSE 75 1_555 A N ILE 35 A ILE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C PHE 33 B PHE 74 1_555 B N MSE 34 B MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale4 B C MSE 34 B MSE 75 1_555 B N ILE 35 B ILE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 C C PHE 33 C PHE 74 1_555 C N MSE 34 C MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale6 C C MSE 34 C MSE 75 1_555 C N ILE 35 C ILE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale7 D C PHE 33 D PHE 74 1_555 D N MSE 34 D MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale8 D C MSE 34 D MSE 75 1_555 D N ILE 35 D ILE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 C O GLY 36 C GLY 77 1_555 J NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
metalc ? metalc2 C O GLY 38 C GLY 79 1_555 J NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc3 C OG1 THR 48 C THR 89 1_555 I NA NA . C NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2I9F 
_atom_sites.fract_transf_matrix[1][1]    0.014656 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007196 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 305 1 GOL GOL . 
F 2 GOL A 1 306 2 GOL GOL . 
G 3 CL B 1 301 1 CL CL . 
H 4 DTT B 1 304 1 DTT DTT . 
I 5 NA C 1 302 1 NA NA . 
J 5 NA C 1 303 2 NA NA . 
K 6 HOH A 1 307 4 HOH HOH . 
K 6 HOH A 2 308 7 HOH HOH . 
K 6 HOH A 3 309 8 HOH HOH . 
K 6 HOH A 4 310 10 HOH HOH . 
K 6 HOH A 5 311 16 HOH HOH . 
K 6 HOH A 6 312 22 HOH HOH . 
K 6 HOH A 7 313 23 HOH HOH . 
K 6 HOH A 8 314 24 HOH HOH . 
K 6 HOH A 9 315 25 HOH HOH . 
K 6 HOH A 10 316 27 HOH HOH . 
K 6 HOH A 11 317 29 HOH HOH . 
K 6 HOH A 12 318 34 HOH HOH . 
K 6 HOH A 13 319 38 HOH HOH . 
K 6 HOH A 14 320 41 HOH HOH . 
K 6 HOH A 15 321 44 HOH HOH . 
K 6 HOH A 16 322 45 HOH HOH . 
K 6 HOH A 17 323 47 HOH HOH . 
K 6 HOH A 18 324 58 HOH HOH . 
K 6 HOH A 19 325 61 HOH HOH . 
K 6 HOH A 20 326 63 HOH HOH . 
K 6 HOH A 21 327 65 HOH HOH . 
K 6 HOH A 22 328 75 HOH HOH . 
K 6 HOH A 23 329 76 HOH HOH . 
K 6 HOH A 24 330 78 HOH HOH . 
K 6 HOH A 25 331 79 HOH HOH . 
K 6 HOH A 26 332 80 HOH HOH . 
K 6 HOH A 27 333 83 HOH HOH . 
K 6 HOH A 28 334 91 HOH HOH . 
K 6 HOH A 29 335 93 HOH HOH . 
K 6 HOH A 30 336 95 HOH HOH . 
K 6 HOH A 31 337 100 HOH HOH . 
K 6 HOH A 32 338 104 HOH HOH . 
K 6 HOH A 33 339 105 HOH HOH . 
K 6 HOH A 34 340 106 HOH HOH . 
K 6 HOH A 35 341 110 HOH HOH . 
K 6 HOH A 36 342 113 HOH HOH . 
K 6 HOH A 37 343 114 HOH HOH . 
K 6 HOH A 38 344 126 HOH HOH . 
K 6 HOH A 39 345 133 HOH HOH . 
K 6 HOH A 40 346 140 HOH HOH . 
K 6 HOH A 41 347 145 HOH HOH . 
K 6 HOH A 42 348 149 HOH HOH . 
K 6 HOH A 43 349 153 HOH HOH . 
K 6 HOH A 44 350 157 HOH HOH . 
K 6 HOH A 45 351 182 HOH HOH . 
K 6 HOH A 46 352 183 HOH HOH . 
K 6 HOH A 47 353 187 HOH HOH . 
K 6 HOH A 48 354 191 HOH HOH . 
K 6 HOH A 49 355 193 HOH HOH . 
K 6 HOH A 50 356 195 HOH HOH . 
K 6 HOH A 51 357 197 HOH HOH . 
K 6 HOH A 52 358 201 HOH HOH . 
K 6 HOH A 53 359 216 HOH HOH . 
K 6 HOH A 54 360 217 HOH HOH . 
K 6 HOH A 55 361 218 HOH HOH . 
K 6 HOH A 56 362 229 HOH HOH . 
K 6 HOH A 57 363 243 HOH HOH . 
K 6 HOH A 58 364 247 HOH HOH . 
L 6 HOH B 1 305 3 HOH HOH . 
L 6 HOH B 2 306 6 HOH HOH . 
L 6 HOH B 3 307 9 HOH HOH . 
L 6 HOH B 4 308 15 HOH HOH . 
L 6 HOH B 5 309 31 HOH HOH . 
L 6 HOH B 6 310 36 HOH HOH . 
L 6 HOH B 7 311 43 HOH HOH . 
L 6 HOH B 8 312 49 HOH HOH . 
L 6 HOH B 9 313 50 HOH HOH . 
L 6 HOH B 10 314 53 HOH HOH . 
L 6 HOH B 11 315 56 HOH HOH . 
L 6 HOH B 12 316 59 HOH HOH . 
L 6 HOH B 13 317 60 HOH HOH . 
L 6 HOH B 14 318 62 HOH HOH . 
L 6 HOH B 15 319 64 HOH HOH . 
L 6 HOH B 16 320 66 HOH HOH . 
L 6 HOH B 17 321 67 HOH HOH . 
L 6 HOH B 18 322 68 HOH HOH . 
L 6 HOH B 19 323 72 HOH HOH . 
L 6 HOH B 20 324 77 HOH HOH . 
L 6 HOH B 21 325 87 HOH HOH . 
L 6 HOH B 22 326 94 HOH HOH . 
L 6 HOH B 23 327 101 HOH HOH . 
L 6 HOH B 24 328 102 HOH HOH . 
L 6 HOH B 25 329 103 HOH HOH . 
L 6 HOH B 26 330 107 HOH HOH . 
L 6 HOH B 27 331 112 HOH HOH . 
L 6 HOH B 28 332 115 HOH HOH . 
L 6 HOH B 29 333 117 HOH HOH . 
L 6 HOH B 30 334 118 HOH HOH . 
L 6 HOH B 31 335 120 HOH HOH . 
L 6 HOH B 32 336 123 HOH HOH . 
L 6 HOH B 33 337 131 HOH HOH . 
L 6 HOH B 34 338 135 HOH HOH . 
L 6 HOH B 35 339 136 HOH HOH . 
L 6 HOH B 36 340 139 HOH HOH . 
L 6 HOH B 37 341 143 HOH HOH . 
L 6 HOH B 38 342 144 HOH HOH . 
L 6 HOH B 39 343 146 HOH HOH . 
L 6 HOH B 40 344 151 HOH HOH . 
L 6 HOH B 41 345 160 HOH HOH . 
L 6 HOH B 42 346 162 HOH HOH . 
L 6 HOH B 43 347 184 HOH HOH . 
L 6 HOH B 44 348 188 HOH HOH . 
L 6 HOH B 45 349 189 HOH HOH . 
L 6 HOH B 46 350 199 HOH HOH . 
L 6 HOH B 47 351 200 HOH HOH . 
L 6 HOH B 48 352 206 HOH HOH . 
L 6 HOH B 49 353 211 HOH HOH . 
L 6 HOH B 50 354 213 HOH HOH . 
L 6 HOH B 51 355 225 HOH HOH . 
L 6 HOH B 52 356 232 HOH HOH . 
L 6 HOH B 53 357 240 HOH HOH . 
L 6 HOH B 54 358 244 HOH HOH . 
M 6 HOH C 1 304 1 HOH HOH . 
M 6 HOH C 2 305 11 HOH HOH . 
M 6 HOH C 3 306 12 HOH HOH . 
M 6 HOH C 4 307 17 HOH HOH . 
M 6 HOH C 5 308 26 HOH HOH . 
M 6 HOH C 6 309 28 HOH HOH . 
M 6 HOH C 7 310 30 HOH HOH . 
M 6 HOH C 8 311 33 HOH HOH . 
M 6 HOH C 9 312 35 HOH HOH . 
M 6 HOH C 10 313 37 HOH HOH . 
M 6 HOH C 11 314 42 HOH HOH . 
M 6 HOH C 12 315 55 HOH HOH . 
M 6 HOH C 13 316 69 HOH HOH . 
M 6 HOH C 14 317 70 HOH HOH . 
M 6 HOH C 15 318 71 HOH HOH . 
M 6 HOH C 16 319 73 HOH HOH . 
M 6 HOH C 17 320 92 HOH HOH . 
M 6 HOH C 18 321 99 HOH HOH . 
M 6 HOH C 19 322 116 HOH HOH . 
M 6 HOH C 20 323 119 HOH HOH . 
M 6 HOH C 21 324 121 HOH HOH . 
M 6 HOH C 22 325 122 HOH HOH . 
M 6 HOH C 23 326 124 HOH HOH . 
M 6 HOH C 24 327 130 HOH HOH . 
M 6 HOH C 25 328 132 HOH HOH . 
M 6 HOH C 26 329 134 HOH HOH . 
M 6 HOH C 27 330 147 HOH HOH . 
M 6 HOH C 28 331 150 HOH HOH . 
M 6 HOH C 29 332 154 HOH HOH . 
M 6 HOH C 30 333 156 HOH HOH . 
M 6 HOH C 31 334 164 HOH HOH . 
M 6 HOH C 32 335 166 HOH HOH . 
M 6 HOH C 33 336 174 HOH HOH . 
M 6 HOH C 34 337 175 HOH HOH . 
M 6 HOH C 35 338 176 HOH HOH . 
M 6 HOH C 36 339 180 HOH HOH . 
M 6 HOH C 37 340 181 HOH HOH . 
M 6 HOH C 38 341 185 HOH HOH . 
M 6 HOH C 39 342 190 HOH HOH . 
M 6 HOH C 40 343 194 HOH HOH . 
M 6 HOH C 41 344 198 HOH HOH . 
M 6 HOH C 42 345 207 HOH HOH . 
M 6 HOH C 43 346 215 HOH HOH . 
M 6 HOH C 44 347 221 HOH HOH . 
M 6 HOH C 45 348 226 HOH HOH . 
M 6 HOH C 46 349 227 HOH HOH . 
M 6 HOH C 47 350 230 HOH HOH . 
M 6 HOH C 48 351 231 HOH HOH . 
M 6 HOH C 49 352 234 HOH HOH . 
M 6 HOH C 50 353 235 HOH HOH . 
M 6 HOH C 51 354 241 HOH HOH . 
M 6 HOH C 52 355 242 HOH HOH . 
M 6 HOH C 53 356 249 HOH HOH . 
N 6 HOH D 1 111 2 HOH HOH . 
N 6 HOH D 2 112 5 HOH HOH . 
N 6 HOH D 3 113 18 HOH HOH . 
N 6 HOH D 4 114 20 HOH HOH . 
N 6 HOH D 5 115 32 HOH HOH . 
N 6 HOH D 6 116 39 HOH HOH . 
N 6 HOH D 7 117 40 HOH HOH . 
N 6 HOH D 8 118 46 HOH HOH . 
N 6 HOH D 9 119 48 HOH HOH . 
N 6 HOH D 10 120 51 HOH HOH . 
N 6 HOH D 11 121 52 HOH HOH . 
N 6 HOH D 12 122 54 HOH HOH . 
N 6 HOH D 13 123 57 HOH HOH . 
N 6 HOH D 14 124 74 HOH HOH . 
N 6 HOH D 15 125 85 HOH HOH . 
N 6 HOH D 16 126 86 HOH HOH . 
N 6 HOH D 17 127 88 HOH HOH . 
N 6 HOH D 18 128 89 HOH HOH . 
N 6 HOH D 19 129 96 HOH HOH . 
N 6 HOH D 20 130 97 HOH HOH . 
N 6 HOH D 21 131 98 HOH HOH . 
N 6 HOH D 22 132 109 HOH HOH . 
N 6 HOH D 23 133 111 HOH HOH . 
N 6 HOH D 24 134 125 HOH HOH . 
N 6 HOH D 25 135 127 HOH HOH . 
N 6 HOH D 26 136 128 HOH HOH . 
N 6 HOH D 27 137 129 HOH HOH . 
N 6 HOH D 28 138 137 HOH HOH . 
N 6 HOH D 29 139 141 HOH HOH . 
N 6 HOH D 30 140 142 HOH HOH . 
N 6 HOH D 31 141 148 HOH HOH . 
N 6 HOH D 32 142 152 HOH HOH . 
N 6 HOH D 33 143 155 HOH HOH . 
N 6 HOH D 34 144 158 HOH HOH . 
N 6 HOH D 35 145 161 HOH HOH . 
N 6 HOH D 36 146 163 HOH HOH . 
N 6 HOH D 37 147 165 HOH HOH . 
N 6 HOH D 38 148 167 HOH HOH . 
N 6 HOH D 39 149 168 HOH HOH . 
N 6 HOH D 40 150 169 HOH HOH . 
N 6 HOH D 41 151 170 HOH HOH . 
N 6 HOH D 42 152 171 HOH HOH . 
N 6 HOH D 43 153 172 HOH HOH . 
N 6 HOH D 44 154 177 HOH HOH . 
N 6 HOH D 45 155 179 HOH HOH . 
N 6 HOH D 46 156 186 HOH HOH . 
N 6 HOH D 47 157 196 HOH HOH . 
N 6 HOH D 48 158 203 HOH HOH . 
N 6 HOH D 49 159 205 HOH HOH . 
N 6 HOH D 50 160 209 HOH HOH . 
N 6 HOH D 51 161 210 HOH HOH . 
N 6 HOH D 52 162 212 HOH HOH . 
N 6 HOH D 53 163 214 HOH HOH . 
N 6 HOH D 54 164 219 HOH HOH . 
N 6 HOH D 55 165 224 HOH HOH . 
N 6 HOH D 56 166 233 HOH HOH . 
N 6 HOH D 57 167 239 HOH HOH . 
N 6 HOH D 58 168 246 HOH HOH . 
N 6 HOH D 59 169 248 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               16.31 
_atom_site.Cartn_y               33.907 
_atom_site.Cartn_z               30.148 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.36 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#