data_2I9P # _model_server_result.job_id zsdUXxia4drk3pbBrLG5wA _model_server_result.datetime_utc '2024-11-05 23:08:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 2I9P # _exptl.entry_id 2I9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.8 _cell.angle_gamma 90 _cell.entry_id 2I9P _cell.length_a 49.627 _cell.length_b 167.319 _cell.length_c 71.089 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 2I9P _atom_sites.fract_transf_matrix[1][1] 0.02015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00647 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 500 500 NAD NAD . F 2 NAD B 1 500 500 NAD NAD . G 2 NAD C 1 500 500 NAD NAD . H 2 NAD D 1 500 500 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 7.002 31.983 80.919 1 61.2 ? PA NAD 500 A 1 HETATM 2 O O1A NAD . . . E 2 7.885 31.573 79.809 1 69.81 ? O1A NAD 500 A 1 HETATM 3 O O2A NAD . . . E 2 7.589 33.113 81.68 1 80.41 ? O2A NAD 500 A 1 HETATM 4 O O5B NAD . . . E 2 6.677 30.663 81.768 1 69.54 ? O5B NAD 500 A 1 HETATM 5 C C5B NAD . . . E 2 6.569 29.387 81.185 1 59.17 ? C5B NAD 500 A 1 HETATM 6 C C4B NAD . . . E 2 7.15 28.349 82.128 1 60.92 ? C4B NAD 500 A 1 HETATM 7 O O4B NAD . . . E 2 6.594 27.084 81.81 1 65.41 ? O4B NAD 500 A 1 HETATM 8 C C3B NAD . . . E 2 8.671 28.24 81.988 1 67.65 ? C3B NAD 500 A 1 HETATM 9 O O3B NAD . . . E 2 9.327 28.121 83.238 1 78.59 ? O3B NAD 500 A 1 HETATM 10 C C2B NAD . . . E 2 8.857 26.976 81.189 1 68.76 ? C2B NAD 500 A 1 HETATM 11 O O2B NAD . . . E 2 10.105 26.379 81.448 1 69.49 ? O2B NAD 500 A 1 HETATM 12 C C1B NAD . . . E 2 7.651 26.161 81.644 1 74.22 ? C1B NAD 500 A 1 HETATM 13 N N9A NAD . . . E 2 7.27 25.089 80.721 1 75.81 ? N9A NAD 500 A 1 HETATM 14 C C8A NAD . . . E 2 7.343 25.062 79.365 1 77.78 ? C8A NAD 500 A 1 HETATM 15 N N7A NAD . . . E 2 6.892 23.854 78.954 1 80.97 ? N7A NAD 500 A 1 HETATM 16 C C5A NAD . . . E 2 6.538 23.112 80.018 1 80.68 ? C5A NAD 500 A 1 HETATM 17 C C6A NAD . . . E 2 6.021 21.823 80.164 1 81.95 ? C6A NAD 500 A 1 HETATM 18 N N6A NAD . . . E 2 5.762 21.02 79.131 1 80.31 ? N6A NAD 500 A 1 HETATM 19 N N1A NAD . . . E 2 5.753 21.364 81.429 1 82.36 ? N1A NAD 500 A 1 HETATM 20 C C2A NAD . . . E 2 6 22.168 82.525 1 81.87 ? C2A NAD 500 A 1 HETATM 21 N N3A NAD . . . E 2 6.516 23.429 82.368 1 81.98 ? N3A NAD 500 A 1 HETATM 22 C C4A NAD . . . E 2 6.776 23.893 81.133 1 81.93 ? C4A NAD 500 A 1 HETATM 23 O O3 NAD . . . E 2 5.553 32.451 80.472 1 62.54 ? O3 NAD 500 A 1 HETATM 24 P PN NAD . . . E 2 4.807 33.541 81.355 1 64.8 ? PN NAD 500 A 1 HETATM 25 O O1N NAD . . . E 2 5.388 34.864 81.011 1 72.61 ? O1N NAD 500 A 1 HETATM 26 O O2N NAD . . . E 2 4.809 33.046 82.751 1 78.08 ? O2N NAD 500 A 1 HETATM 27 O O5D NAD . . . E 2 3.309 33.429 80.778 1 65.96 ? O5D NAD 500 A 1 HETATM 28 C C5D NAD . . . E 2 2.68 32.171 80.598 1 62.31 ? C5D NAD 500 A 1 HETATM 29 C C4D NAD . . . E 2 1.346 32.326 79.863 1 64.37 ? C4D NAD 500 A 1 HETATM 30 O O4D NAD . . . E 2 0.577 33.389 80.412 1 59.43 ? O4D NAD 500 A 1 HETATM 31 C C3D NAD . . . E 2 1.544 32.641 78.38 1 62.12 ? C3D NAD 500 A 1 HETATM 32 O O3D NAD . . . E 2 0.627 31.871 77.634 1 54.65 ? O3D NAD 500 A 1 HETATM 33 C C2D NAD . . . E 2 1.281 34.133 78.289 1 58.61 ? C2D NAD 500 A 1 HETATM 34 O O2D NAD . . . E 2 0.802 34.577 77.036 1 53.15 ? O2D NAD 500 A 1 HETATM 35 C C1D NAD . . . E 2 0.247 34.322 79.406 1 61.33 ? C1D NAD 500 A 1 HETATM 36 N N1N NAD . . . E 2 0.2 35.672 79.983 1 59.5 ? N1N NAD 500 A 1 HETATM 37 C C2N NAD . . . E 2 1.338 36.374 80.232 1 56.04 ? C2N NAD 500 A 1 HETATM 38 C C3N NAD . . . E 2 1.251 37.658 80.772 1 63.96 ? C3N NAD 500 A 1 HETATM 39 C C7N NAD . . . E 2 2.504 38.421 81.046 1 64.7 ? C7N NAD 500 A 1 HETATM 40 O O7N NAD . . . E 2 2.411 39.785 81.413 1 71.51 ? O7N NAD 500 A 1 HETATM 41 N N7N NAD . . . E 2 3.656 37.749 80.94 1 67.03 ? N7N NAD 500 A 1 HETATM 42 C C4N NAD . . . E 2 0.027 38.224 81.093 1 63.65 ? C4N NAD 500 A 1 HETATM 43 C C5N NAD . . . E 2 -1.118 37.493 80.843 1 71.53 ? C5N NAD 500 A 1 HETATM 44 C C6N NAD . . . E 2 -1.016 36.215 80.284 1 71.9 ? C6N NAD 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #