data_2I9P
#
_model_server_result.job_id            kM1geT8VWweFtXd7IUkWnQ 
_model_server_result.datetime_utc      '2024-11-05 23:21:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2i9p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":500}' 
#
_entry.id    2I9P 
#
_exptl.entry_id    2I9P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.8 
_cell.angle_gamma         90 
_cell.entry_id            2I9P 
_cell.length_a            49.627 
_cell.length_b            167.319 
_cell.length_c            71.089 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2I9P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     2I9P 
_atom_sites.fract_transf_matrix[1][1]    0.02015 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00647 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014774 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 500 500 NAD NAD . 
F 2 NAD B 1 500 500 NAD NAD . 
G 2 NAD C 1 500 500 NAD NAD . 
H 2 NAD D 1 500 500 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . G 2 17.363 63.589 40.611 1 88.9 ? PA NAD 500 C 1 
HETATM 2 O O1A NAD . . . G 2 17.063 64.038 41.986 1 92.66 ? O1A NAD 500 C 1 
HETATM 3 O O2A NAD . . . G 2 18.433 62.558 40.58 1 69.87 ? O2A NAD 500 C 1 
HETATM 4 O O5B NAD . . . G 2 17.667 64.901 39.699 1 99.8 ? O5B NAD 500 C 1 
HETATM 5 C C5B NAD . . . G 2 16.909 66.103 39.779 1 95.27 ? C5B NAD 500 C 1 
HETATM 6 C C4B NAD . . . G 2 17.801 67.335 39.57 1 95 ? C4B NAD 500 C 1 
HETATM 7 O O4B NAD . . . G 2 17.029 68.529 39.49 1 94.39 ? O4B NAD 500 C 1 
HETATM 8 C C3B NAD . . . G 2 18.782 67.527 40.721 1 91.15 ? C3B NAD 500 C 1 
HETATM 9 O O3B NAD . . . G 2 20.113 67.441 40.269 1 91.79 ? O3B NAD 500 C 1 
HETATM 10 C C2B NAD . . . G 2 18.454 68.889 41.31 1 90.45 ? C2B NAD 500 C 1 
HETATM 11 O O2B NAD . . . G 2 19.608 69.619 41.638 1 85.8 ? O2B NAD 500 C 1 
HETATM 12 C C1B NAD . . . G 2 17.618 69.582 40.241 1 96.11 ? C1B NAD 500 C 1 
HETATM 13 N N9A NAD . . . G 2 16.573 70.508 40.765 1 103.58 ? N9A NAD 500 C 1 
HETATM 14 C C8A NAD . . . G 2 15.827 70.393 41.919 1 101.06 ? C8A NAD 500 C 1 
HETATM 15 N N7A NAD . . . G 2 14.994 71.461 42.002 1 99.42 ? N7A NAD 500 C 1 
HETATM 16 C C5A NAD . . . G 2 15.178 72.258 40.931 1 100.6 ? C5A NAD 500 C 1 
HETATM 17 C C6A NAD . . . G 2 14.587 73.453 40.529 1 98.46 ? C6A NAD 500 C 1 
HETATM 18 N N6A NAD . . . G 2 13.638 74.013 41.268 1 102.7 ? N6A NAD 500 C 1 
HETATM 19 N N1A NAD . . . G 2 14.98 74.058 39.353 1 99.31 ? N1A NAD 500 C 1 
HETATM 20 C C2A NAD . . . G 2 15.969 73.479 38.578 1 101.26 ? C2A NAD 500 C 1 
HETATM 21 N N3A NAD . . . G 2 16.556 72.292 38.982 1 105.37 ? N3A NAD 500 C 1 
HETATM 22 C C4A NAD . . . G 2 16.169 71.68 40.142 1 107.23 ? C4A NAD 500 C 1 
HETATM 23 O O3 NAD . . . G 2 16.026 62.991 39.958 1 86.91 ? O3 NAD 500 C 1 
HETATM 24 P PN NAD . . . G 2 16.141 61.997 38.703 1 86.59 ? PN NAD 500 C 1 
HETATM 25 O O1N NAD . . . G 2 16.836 60.773 39.16 1 73.3 ? O1N NAD 500 C 1 
HETATM 26 O O2N NAD . . . G 2 16.712 62.793 37.583 1 96.44 ? O2N NAD 500 C 1 
HETATM 27 O O5D NAD . . . G 2 14.597 61.672 38.356 1 70.81 ? O5D NAD 500 C 1 
HETATM 28 C C5D NAD . . . G 2 13.597 62.655 38.422 1 67.26 ? C5D NAD 500 C 1 
HETATM 29 C C4D NAD . . . G 2 12.248 61.992 38.179 1 78.69 ? C4D NAD 500 C 1 
HETATM 30 O O4D NAD . . . G 2 12.386 60.862 37.339 1 76.83 ? O4D NAD 500 C 1 
HETATM 31 C C3D NAD . . . G 2 11.573 61.52 39.461 1 81.45 ? C3D NAD 500 C 1 
HETATM 32 O O3D NAD . . . G 2 10.319 62.176 39.503 1 84.18 ? O3D NAD 500 C 1 
HETATM 33 C C2D NAD . . . G 2 11.527 59.989 39.358 1 81.83 ? C2D NAD 500 C 1 
HETATM 34 O O2D NAD . . . G 2 10.355 59.329 39.821 1 83.76 ? O2D NAD 500 C 1 
HETATM 35 C C1D NAD . . . G 2 11.651 59.769 37.859 1 82.34 ? C1D NAD 500 C 1 
HETATM 36 N N1N NAD . . . G 2 12.301 58.492 37.501 1 81.81 ? N1N NAD 500 C 1 
HETATM 37 C C2N NAD . . . G 2 13.5 58.129 38.054 1 75.85 ? C2N NAD 500 C 1 
HETATM 38 C C3N NAD . . . G 2 14.08 56.918 37.676 1 76.71 ? C3N NAD 500 C 1 
HETATM 39 C C7N NAD . . . G 2 15.389 56.49 38.252 1 77.75 ? C7N NAD 500 C 1 
HETATM 40 O O7N NAD . . . G 2 15.782 55.14 38.104 1 74.75 ? O7N NAD 500 C 1 
HETATM 41 N N7N NAD . . . G 2 16.148 57.401 38.874 1 76.21 ? N7N NAD 500 C 1 
HETATM 42 C C4N NAD . . . G 2 13.458 56.091 36.742 1 82.09 ? C4N NAD 500 C 1 
HETATM 43 C C5N NAD . . . G 2 12.249 56.483 36.186 1 84.15 ? C5N NAD 500 C 1 
HETATM 44 C C6N NAD . . . G 2 11.681 57.69 36.576 1 81.9 ? C6N NAD 500 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#