data_2I9X
#
_model_server_result.job_id            6-V1X6fi0nlJmS_3b7N7bQ 
_model_server_result.datetime_utc      '2025-03-04 17:34:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2i9x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":104}' 
#
_entry.id    2I9X 
#
_exptl.entry_id    2I9X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2I9X 
_cell.length_a            64.55 
_cell.length_b            64.55 
_cell.length_c            97.711 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2I9X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 4 A MSE 1 1_555 A N LYS 5 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C ARG 19 A ARG 16 1_555 A N MSE 20 A MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale4 A C MSE 20 A MSE 17 1_555 A N LYS 21 A LYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale5 A C ALA 49 A ALA 46 1_555 A N MSE 50 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 A C MSE 50 A MSE 47 1_555 A N PRO 51 A PRO 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale7 A C ASP 70 A ASP 67 1_555 A N MSE 71 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale8 A C MSE 71 A MSE 68 1_555 A N ARG 72 A ARG 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale9 A C VAL 79 A VAL 76 1_555 A N MSE 80 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale10 A C MSE 80 A MSE 77 1_555 A N LYS 81 A LYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale11 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale12 B C MSE 4 B MSE 1 1_555 B N LYS 5 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale13 B C ARG 19 B ARG 16 1_555 B N MSE 20 B MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale14 B C MSE 20 B MSE 17 1_555 B N LYS 21 B LYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale15 B C ALA 49 B ALA 46 1_555 B N MSE 50 B MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale16 B C MSE 50 B MSE 47 1_555 B N PRO 51 B PRO 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale17 B C ASP 70 B ASP 67 1_555 B N MSE 71 B MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale18 B C MSE 71 B MSE 68 1_555 B N ARG 72 B ARG 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale19 B C VAL 79 B VAL 76 1_555 B N MSE 80 B MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale20 B C MSE 80 B MSE 77 1_555 B N LYS 81 B LYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     2I9X 
_atom_sites.fract_transf_matrix[1][1]    0.015492 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010234 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 101 1 EDO EDO . 
D 2 EDO A 1 103 3 EDO EDO . 
E 2 EDO B 1 102 2 EDO EDO . 
F 2 EDO B 1 104 4 EDO EDO . 
G 2 EDO B 1 105 5 EDO EDO . 
H 3 HOH A 1 104 3 HOH HOH . 
H 3 HOH A 2 105 7 HOH HOH . 
H 3 HOH A 3 106 8 HOH HOH . 
H 3 HOH A 4 107 9 HOH HOH . 
H 3 HOH A 5 108 11 HOH HOH . 
H 3 HOH A 6 109 13 HOH HOH . 
H 3 HOH A 7 110 14 HOH HOH . 
H 3 HOH A 8 111 15 HOH HOH . 
H 3 HOH A 9 112 16 HOH HOH . 
H 3 HOH A 10 113 18 HOH HOH . 
H 3 HOH A 11 114 19 HOH HOH . 
H 3 HOH A 12 115 21 HOH HOH . 
H 3 HOH A 13 116 22 HOH HOH . 
H 3 HOH A 14 117 24 HOH HOH . 
H 3 HOH A 15 118 26 HOH HOH . 
H 3 HOH A 16 119 27 HOH HOH . 
H 3 HOH A 17 120 28 HOH HOH . 
H 3 HOH A 18 121 29 HOH HOH . 
H 3 HOH A 19 122 30 HOH HOH . 
H 3 HOH A 20 123 32 HOH HOH . 
H 3 HOH A 21 124 34 HOH HOH . 
H 3 HOH A 22 125 35 HOH HOH . 
H 3 HOH A 23 126 37 HOH HOH . 
H 3 HOH A 24 127 40 HOH HOH . 
H 3 HOH A 25 128 45 HOH HOH . 
H 3 HOH A 26 129 47 HOH HOH . 
H 3 HOH A 27 130 51 HOH HOH . 
H 3 HOH A 28 131 52 HOH HOH . 
H 3 HOH A 29 132 55 HOH HOH . 
H 3 HOH A 30 133 60 HOH HOH . 
H 3 HOH A 31 134 61 HOH HOH . 
H 3 HOH A 32 135 65 HOH HOH . 
H 3 HOH A 33 136 66 HOH HOH . 
H 3 HOH A 34 137 68 HOH HOH . 
H 3 HOH A 35 138 69 HOH HOH . 
H 3 HOH A 36 139 71 HOH HOH . 
H 3 HOH A 37 140 72 HOH HOH . 
H 3 HOH A 38 141 74 HOH HOH . 
H 3 HOH A 39 142 75 HOH HOH . 
H 3 HOH A 40 143 77 HOH HOH . 
H 3 HOH A 41 144 79 HOH HOH . 
H 3 HOH A 42 145 80 HOH HOH . 
H 3 HOH A 43 146 81 HOH HOH . 
H 3 HOH A 44 147 82 HOH HOH . 
H 3 HOH A 45 148 85 HOH HOH . 
H 3 HOH A 46 149 86 HOH HOH . 
H 3 HOH A 47 150 87 HOH HOH . 
H 3 HOH A 48 151 88 HOH HOH . 
H 3 HOH A 49 152 89 HOH HOH . 
H 3 HOH A 50 153 98 HOH HOH . 
H 3 HOH A 51 154 99 HOH HOH . 
H 3 HOH A 52 155 105 HOH HOH . 
H 3 HOH A 53 156 108 HOH HOH . 
H 3 HOH A 54 157 111 HOH HOH . 
H 3 HOH A 55 158 112 HOH HOH . 
H 3 HOH A 56 159 115 HOH HOH . 
H 3 HOH A 57 160 116 HOH HOH . 
H 3 HOH A 58 161 117 HOH HOH . 
H 3 HOH A 59 162 118 HOH HOH . 
H 3 HOH A 60 163 119 HOH HOH . 
H 3 HOH A 61 164 120 HOH HOH . 
H 3 HOH A 62 165 121 HOH HOH . 
H 3 HOH A 63 166 122 HOH HOH . 
H 3 HOH A 64 167 123 HOH HOH . 
H 3 HOH A 65 168 124 HOH HOH . 
H 3 HOH A 66 169 125 HOH HOH . 
H 3 HOH A 67 170 126 HOH HOH . 
H 3 HOH A 68 171 128 HOH HOH . 
H 3 HOH A 69 172 132 HOH HOH . 
H 3 HOH A 70 173 133 HOH HOH . 
H 3 HOH A 71 174 134 HOH HOH . 
H 3 HOH A 72 175 139 HOH HOH . 
H 3 HOH A 73 176 140 HOH HOH . 
H 3 HOH A 74 177 141 HOH HOH . 
H 3 HOH A 75 178 144 HOH HOH . 
H 3 HOH A 76 179 147 HOH HOH . 
H 3 HOH A 77 180 148 HOH HOH . 
H 3 HOH A 78 181 149 HOH HOH . 
H 3 HOH A 79 182 150 HOH HOH . 
H 3 HOH A 80 183 152 HOH HOH . 
H 3 HOH A 81 184 153 HOH HOH . 
H 3 HOH A 82 185 154 HOH HOH . 
H 3 HOH A 83 186 155 HOH HOH . 
I 3 HOH B 1 106 1 HOH HOH . 
I 3 HOH B 2 107 2 HOH HOH . 
I 3 HOH B 3 108 4 HOH HOH . 
I 3 HOH B 4 109 5 HOH HOH . 
I 3 HOH B 5 110 6 HOH HOH . 
I 3 HOH B 6 111 10 HOH HOH . 
I 3 HOH B 7 112 12 HOH HOH . 
I 3 HOH B 8 113 17 HOH HOH . 
I 3 HOH B 9 114 20 HOH HOH . 
I 3 HOH B 10 115 23 HOH HOH . 
I 3 HOH B 11 116 25 HOH HOH . 
I 3 HOH B 12 117 31 HOH HOH . 
I 3 HOH B 13 118 33 HOH HOH . 
I 3 HOH B 14 119 36 HOH HOH . 
I 3 HOH B 15 120 38 HOH HOH . 
I 3 HOH B 16 121 39 HOH HOH . 
I 3 HOH B 17 122 41 HOH HOH . 
I 3 HOH B 18 123 42 HOH HOH . 
I 3 HOH B 19 124 43 HOH HOH . 
I 3 HOH B 20 125 44 HOH HOH . 
I 3 HOH B 21 126 46 HOH HOH . 
I 3 HOH B 22 127 48 HOH HOH . 
I 3 HOH B 23 128 49 HOH HOH . 
I 3 HOH B 24 129 50 HOH HOH . 
I 3 HOH B 25 130 53 HOH HOH . 
I 3 HOH B 26 131 54 HOH HOH . 
I 3 HOH B 27 132 56 HOH HOH . 
I 3 HOH B 28 133 57 HOH HOH . 
I 3 HOH B 29 134 58 HOH HOH . 
I 3 HOH B 30 135 59 HOH HOH . 
I 3 HOH B 31 136 62 HOH HOH . 
I 3 HOH B 32 137 63 HOH HOH . 
I 3 HOH B 33 138 64 HOH HOH . 
I 3 HOH B 34 139 67 HOH HOH . 
I 3 HOH B 35 140 70 HOH HOH . 
I 3 HOH B 36 141 73 HOH HOH . 
I 3 HOH B 37 142 76 HOH HOH . 
I 3 HOH B 38 143 78 HOH HOH . 
I 3 HOH B 39 144 83 HOH HOH . 
I 3 HOH B 40 145 84 HOH HOH . 
I 3 HOH B 41 146 90 HOH HOH . 
I 3 HOH B 42 147 91 HOH HOH . 
I 3 HOH B 43 148 92 HOH HOH . 
I 3 HOH B 44 149 93 HOH HOH . 
I 3 HOH B 45 150 94 HOH HOH . 
I 3 HOH B 46 151 95 HOH HOH . 
I 3 HOH B 47 152 96 HOH HOH . 
I 3 HOH B 48 153 97 HOH HOH . 
I 3 HOH B 49 154 100 HOH HOH . 
I 3 HOH B 50 155 101 HOH HOH . 
I 3 HOH B 51 156 102 HOH HOH . 
I 3 HOH B 52 157 103 HOH HOH . 
I 3 HOH B 53 158 104 HOH HOH . 
I 3 HOH B 54 159 106 HOH HOH . 
I 3 HOH B 55 160 107 HOH HOH . 
I 3 HOH B 56 161 109 HOH HOH . 
I 3 HOH B 57 162 110 HOH HOH . 
I 3 HOH B 58 163 113 HOH HOH . 
I 3 HOH B 59 164 114 HOH HOH . 
I 3 HOH B 60 165 127 HOH HOH . 
I 3 HOH B 61 166 129 HOH HOH . 
I 3 HOH B 62 167 130 HOH HOH . 
I 3 HOH B 63 168 131 HOH HOH . 
I 3 HOH B 64 169 135 HOH HOH . 
I 3 HOH B 65 170 136 HOH HOH . 
I 3 HOH B 66 171 137 HOH HOH . 
I 3 HOH B 67 172 138 HOH HOH . 
I 3 HOH B 68 173 142 HOH HOH . 
I 3 HOH B 69 174 143 HOH HOH . 
I 3 HOH B 70 175 145 HOH HOH . 
I 3 HOH B 71 176 146 HOH HOH . 
I 3 HOH B 72 177 151 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 2 26.768 40.556 65.843 1 43.33 ? C1 EDO 104 B 1 
HETATM 2 O O1 EDO . . . F 2 26.013 41.518 66.587 1 46.63 ? O1 EDO 104 B 1 
HETATM 3 C C2 EDO . . . F 2 25.804 39.844 64.903 1 43.38 ? C2 EDO 104 B 1 
HETATM 4 O O2 EDO . . . F 2 26.491 39.555 63.679 1 42.12 ? O2 EDO 104 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#