data_2I9Z # _model_server_result.job_id 7hgCYQePiGPT4n5eOHzmuA _model_server_result.datetime_utc '2025-03-04 17:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2i9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":104}' # _entry.id 2I9Z # _exptl.entry_id 2I9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2I9Z _cell.length_a 63.604 _cell.length_b 63.604 _cell.length_c 98.498 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2I9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N LYS 5 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C ARG 19 A ARG 16 1_555 A N MSE 20 A MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C MSE 20 A MSE 17 1_555 A N LYS 21 A LYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C ALA 49 A ALA 46 1_555 A N MSE 50 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 50 A MSE 47 1_555 A N PRO 51 A PRO 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale6 A C ASP 70 A ASP 67 1_555 A N MSE 71 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 A C MSE 71 A MSE 68 1_555 A N ARG 72 A ARG 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C VAL 79 A VAL 76 1_555 A N MSE 80 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C MSE 80 A MSE 77 1_555 A N LYS 81 A LYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 4 B MSE 1 1_555 B N LYS 5 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 B C ARG 19 B ARG 16 1_555 B N MSE 20 B MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C MSE 20 B MSE 17 1_555 B N LYS 21 B LYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 B C ALA 49 B ALA 46 1_555 B N MSE 50 B MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 B C MSE 50 B MSE 47 1_555 B N PRO 51 B PRO 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale15 B C ASP 70 B ASP 67 1_555 B N MSE 71 B MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C MSE 71 B MSE 68 1_555 B N ARG 72 B ARG 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale17 B C VAL 79 B VAL 76 1_555 B N MSE 80 B MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 B C MSE 80 B MSE 77 1_555 B N LYS 81 B LYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 2I9Z _atom_sites.fract_transf_matrix[1][1] 0.015722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 103 1 EDO EDO . D 2 EDO A 1 104 2 EDO EDO . E 2 EDO B 1 103 3 EDO EDO . F 2 EDO B 1 104 4 EDO EDO . G 3 HOH A 1 105 2 HOH HOH . G 3 HOH A 2 106 4 HOH HOH . G 3 HOH A 3 107 5 HOH HOH . G 3 HOH A 4 108 6 HOH HOH . G 3 HOH A 5 109 9 HOH HOH . G 3 HOH A 6 110 10 HOH HOH . G 3 HOH A 7 111 12 HOH HOH . G 3 HOH A 8 112 15 HOH HOH . G 3 HOH A 9 113 16 HOH HOH . G 3 HOH A 10 114 19 HOH HOH . G 3 HOH A 11 115 20 HOH HOH . G 3 HOH A 12 116 21 HOH HOH . G 3 HOH A 13 117 22 HOH HOH . G 3 HOH A 14 118 24 HOH HOH . G 3 HOH A 15 119 26 HOH HOH . G 3 HOH A 16 120 29 HOH HOH . G 3 HOH A 17 121 30 HOH HOH . G 3 HOH A 18 122 31 HOH HOH . G 3 HOH A 19 123 33 HOH HOH . G 3 HOH A 20 124 35 HOH HOH . G 3 HOH A 21 125 37 HOH HOH . G 3 HOH A 22 126 38 HOH HOH . G 3 HOH A 23 127 46 HOH HOH . G 3 HOH A 24 128 47 HOH HOH . G 3 HOH A 25 129 49 HOH HOH . G 3 HOH A 26 130 50 HOH HOH . G 3 HOH A 27 131 53 HOH HOH . G 3 HOH A 28 132 61 HOH HOH . G 3 HOH A 29 133 63 HOH HOH . G 3 HOH A 30 134 67 HOH HOH . G 3 HOH A 31 135 68 HOH HOH . G 3 HOH A 32 136 69 HOH HOH . G 3 HOH A 33 137 71 HOH HOH . G 3 HOH A 34 138 73 HOH HOH . G 3 HOH A 35 139 74 HOH HOH . H 3 HOH B 1 105 1 HOH HOH . H 3 HOH B 2 106 3 HOH HOH . H 3 HOH B 3 107 7 HOH HOH . H 3 HOH B 4 108 8 HOH HOH . H 3 HOH B 5 109 11 HOH HOH . H 3 HOH B 6 110 13 HOH HOH . H 3 HOH B 7 111 14 HOH HOH . H 3 HOH B 8 112 17 HOH HOH . H 3 HOH B 9 113 18 HOH HOH . H 3 HOH B 10 114 23 HOH HOH . H 3 HOH B 11 115 25 HOH HOH . H 3 HOH B 12 116 27 HOH HOH . H 3 HOH B 13 117 28 HOH HOH . H 3 HOH B 14 118 32 HOH HOH . H 3 HOH B 15 119 36 HOH HOH . H 3 HOH B 16 120 39 HOH HOH . H 3 HOH B 17 121 40 HOH HOH . H 3 HOH B 18 122 41 HOH HOH . H 3 HOH B 19 123 42 HOH HOH . H 3 HOH B 20 124 43 HOH HOH . H 3 HOH B 21 125 44 HOH HOH . H 3 HOH B 22 126 45 HOH HOH . H 3 HOH B 23 127 48 HOH HOH . H 3 HOH B 24 128 51 HOH HOH . H 3 HOH B 25 129 52 HOH HOH . H 3 HOH B 26 130 54 HOH HOH . H 3 HOH B 27 131 55 HOH HOH . H 3 HOH B 28 132 56 HOH HOH . H 3 HOH B 29 133 57 HOH HOH . H 3 HOH B 30 134 59 HOH HOH . H 3 HOH B 31 135 60 HOH HOH . H 3 HOH B 32 136 62 HOH HOH . H 3 HOH B 33 137 64 HOH HOH . H 3 HOH B 34 138 65 HOH HOH . H 3 HOH B 35 139 66 HOH HOH . H 3 HOH B 36 140 70 HOH HOH . H 3 HOH B 37 141 72 HOH HOH . H 3 HOH B 38 142 75 HOH HOH . H 3 HOH B 39 143 76 HOH HOH . H 3 HOH B 40 144 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 9.101 19.722 22.486 1 31.08 ? C1 EDO 104 A 1 HETATM 2 O O1 EDO . . . D 2 9.761 20.786 21.758 1 31.5 ? O1 EDO 104 A 1 HETATM 3 C C2 EDO . . . D 2 9.874 19.474 23.786 1 28.59 ? C2 EDO 104 A 1 HETATM 4 O O2 EDO . . . D 2 9.447 18.32 24.507 1 29.95 ? O2 EDO 104 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #