data_2IAH # _model_server_result.job_id dYVvm2FDhRVlw7GkUm7ACg _model_server_result.datetime_utc '2024-11-26 03:20:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2iah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 2IAH # _exptl.entry_id 2IAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.341 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IAH _cell.length_a 82.123 _cell.length_b 82.123 _cell.length_c 286.225 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C15 PVE . I PVE 1 1_555 B N DSN 1 I DSN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? covale ? covale2 B C DSN 1 I DSN 2 1_555 B N ARG 2 I ARG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.258 ? covale ? covale3 B C ARG 2 I ARG 3 1_555 B N DSN 3 I DSN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.274 ? covale ? covale4 B C DSN 3 I DSN 4 1_555 B N FHO 4 I FHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 B C FHO 4 I FHO 5 1_555 B N LYS 5 I LYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C LYS 5 I LYS 6 1_555 B N FHO 6 I FHO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 B NZ LYS 5 I LYS 6 1_555 B C THR 8 I THR 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 B C FHO 6 I FHO 7 1_555 B N THR 7 I THR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 D O25 PVE . I PVE 1 1_555 E FE FE . I FE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc2 D O26 PVE . I PVE 1 1_555 E FE FE . I FE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 B OZ FHO 4 I FHO 5 1_555 E FE FE . I FE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 B NE FHO 4 I FHO 5 1_555 E FE FE . I FE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc5 B OH FHO 4 I FHO 5 1_555 E FE FE . I FE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc6 B OZ FHO 6 I FHO 7 1_555 E FE FE . I FE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc7 B OH FHO 6 I FHO 7 1_555 E FE FE . I FE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc8 B NE FHO 6 I FHO 7 1_555 E FE FE . I FE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? # _chem_comp.formula 'C17 H18 N3 O7 1' _chem_comp.formula_weight 376.341 _chem_comp.id PVE _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C22 PVE doub 298 n n C22 O24 PVE sing 299 n n C22 C21 PVE sing 300 n n C21 C20 PVE sing 301 n n C20 C18 PVE sing 302 n n C18 O19 PVE doub 303 n n C18 N17 PVE sing 304 n n N17 C3 PVE sing 305 n n C3 C4 PVE doub 306 n y C3 C2 PVE sing 307 n y C4 C10 PVE sing 308 n y C10 C5 PVE sing 309 n y C10 C9 PVE doub 310 n y C5 C6 PVE doub 311 n y C6 O25 PVE sing 312 n n C6 C7 PVE sing 313 n y C7 O26 PVE sing 314 n n C7 C8 PVE doub 315 n y C8 C9 PVE sing 316 n y C9 N1 PVE sing 317 n y N1 C14 PVE sing 318 n n N1 C2 PVE doub 319 n y C14 C15 PVE sing 320 n n C14 C13 PVE sing 321 n n C15 O16 PVE doub 322 n n C15 OXT PVE sing 323 n n C2 N11 PVE sing 324 n n N11 C12 PVE sing 325 n n C12 C13 PVE sing 326 n n O24 H24 PVE sing 327 n n C21 H211 PVE sing 328 n n C21 H212 PVE sing 329 n n C20 H201 PVE sing 330 n n C20 H202 PVE sing 331 n n N17 H17 PVE sing 332 n n C4 H4 PVE sing 333 n n C5 H5 PVE sing 334 n n O25 H25 PVE sing 335 n n O26 H26 PVE sing 336 n n C8 H8 PVE sing 337 n n C14 H14 PVE sing 338 n n C13 H131 PVE sing 339 n n C13 H132 PVE sing 340 n n OXT HOT PVE sing 341 n n N11 H11 PVE sing 342 n n C12 H121 PVE sing 343 n n C12 H122 PVE sing 344 n n # _atom_sites.entry_id 2IAH _atom_sites.fract_transf_matrix[1][1] 0.012177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003494 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 3 3 SO4 SO4 . D 4 PVE I 1 1 1 PVE PVE . E 5 FE I 1 10 10 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PVE . . . D 4 -12.071 32.029 117.548 1 60 ? O23 PVE 1 I 1 HETATM 2 C C22 PVE . . . D 4 -12.215 32.251 118.774 1 60.21 ? C22 PVE 1 I 1 HETATM 3 O O24 PVE . . . D 4 -11.625 31.572 119.64 1 59.88 ? O24 PVE 1 I 1 HETATM 4 C C21 PVE . . . D 4 -13.139 33.372 119.235 1 60.39 ? C21 PVE 1 I 1 HETATM 5 C C20 PVE . . . D 4 -12.509 34.765 119.093 1 60.66 ? C20 PVE 1 I 1 HETATM 6 C C18 PVE . . . D 4 -12.065 34.933 117.659 1 60.62 ? C18 PVE 1 I 1 HETATM 7 O O19 PVE . . . D 4 -12.902 35.188 116.808 1 61.17 ? O19 PVE 1 I 1 HETATM 8 N N17 PVE . . . D 4 -10.754 34.747 117.453 1 59.64 ? N17 PVE 1 I 1 HETATM 9 C C3 PVE . . . D 4 -10.046 34.795 116.318 1 58.69 ? C3 PVE 1 I 1 HETATM 10 C C4 PVE . . . D 4 -8.563 34.547 116.469 1 58.3 ? C4 PVE 1 I 1 HETATM 11 C C10 PVE . . . D 4 -7.822 35.541 115.579 1 57.44 ? C10 PVE 1 I 1 HETATM 12 C C5 PVE . . . D 4 -6.322 35.272 115.635 1 56.67 ? C5 PVE 1 I 1 HETATM 13 C C6 PVE . . . D 4 -5.583 35.987 114.521 1 56.33 ? C6 PVE 1 I 1 HETATM 14 O O25 PVE . . . D 4 -4.416 36.285 114.69 1 55.94 ? O25 PVE 1 I 1 HETATM 15 C C7 PVE . . . D 4 -6.167 36.284 113.355 1 56.51 ? C7 PVE 1 I 1 HETATM 16 O O26 PVE . . . D 4 -5.49 36.356 112.341 1 55.72 ? O26 PVE 1 I 1 HETATM 17 C C8 PVE . . . D 4 -7.659 36.53 113.284 1 57.21 ? C8 PVE 1 I 1 HETATM 18 C C9 PVE . . . D 4 -8.357 35.48 114.144 1 57.48 ? C9 PVE 1 I 1 HETATM 19 N N1 PVE . . . D 4 -9.797 35.761 114.244 1 58.27 ? N1 PVE 1 I 1 HETATM 20 C C14 PVE . . . D 4 -10.491 36.759 113.434 1 58.3 ? C14 PVE 1 I 1 HETATM 21 C C15 PVE . . . D 4 -11.084 37.839 114.299 1 58.78 ? C15 PVE 1 I 1 HETATM 22 O O16 PVE . . . D 4 -11.534 37.537 115.396 1 59.61 ? O16 PVE 1 I 1 HETATM 23 C C2 PVE . . . D 4 -10.537 35.049 115.095 1 58.52 ? C2 PVE 1 I 1 HETATM 24 N N11 PVE . . . D 4 -11.716 34.583 114.678 1 58.56 ? N11 PVE 1 I 1 HETATM 25 C C12 PVE . . . D 4 -12.529 35.141 113.599 1 58.23 ? C12 PVE 1 I 1 HETATM 26 C C13 PVE . . . D 4 -11.605 35.987 112.707 1 58.38 ? C13 PVE 1 I 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #