data_2IBA # _model_server_result.job_id 8ma0VDSlMUMJTYvmRDnfNg _model_server_result.datetime_utc '2024-11-15 00:05:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2iba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":651}' # _entry.id 2IBA # _exptl.entry_id 2IBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 153.099 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-AZAXANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IBA _cell.length_a 80.492 _cell.length_b 96.041 _cell.length_c 105.343 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.492 96.041 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.492 0 105.343 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 96.041 105.343 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A O ILE 89 A ILE 88 1_555 B NA NA . A NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A O TYR 92 A TYR 91 1_555 B NA NA . A NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc3 A O ILE 95 A ILE 94 1_555 B NA NA . A NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 B NA NA . A NA 650 1_555 D O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C4 H3 N5 O2' _chem_comp.formula_weight 153.099 _chem_comp.id AZA _chem_comp.mon_nstd_flag . _chem_comp.name 8-AZAXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 AZA sing 76 n y N1 C6 AZA sing 77 n y N1 HN1 AZA sing 78 n n C2 O2 AZA doub 79 n n C2 N3 AZA sing 80 n y N3 C4 AZA sing 81 n y N3 HN3 AZA sing 82 n n C4 C5 AZA doub 83 n y C4 N9 AZA sing 84 n y C5 C6 AZA sing 85 n y C5 N7 AZA sing 86 n y C6 O6 AZA doub 87 n n N7 N8 AZA doub 88 n y N8 N9 AZA sing 89 n y N9 HN9 AZA sing 90 n n # _atom_sites.entry_id 2IBA _atom_sites.fract_transf_matrix[1][1] 0.012424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 650 650 NA NA . C 3 AZA A 1 651 300 AZA AZA . D 4 HOH A 1 652 301 HOH HOH . D 4 HOH A 2 653 302 HOH HOH . D 4 HOH A 3 654 303 HOH HOH . D 4 HOH A 4 655 304 HOH HOH . D 4 HOH A 5 656 305 HOH HOH . D 4 HOH A 6 657 306 HOH HOH . D 4 HOH A 7 658 307 HOH HOH . D 4 HOH A 8 659 308 HOH HOH . D 4 HOH A 9 660 309 HOH HOH . D 4 HOH A 10 661 310 HOH HOH . D 4 HOH A 11 662 311 HOH HOH . D 4 HOH A 12 663 312 HOH HOH . D 4 HOH A 13 664 313 HOH HOH . D 4 HOH A 14 665 314 HOH HOH . D 4 HOH A 15 666 315 HOH HOH . D 4 HOH A 16 667 316 HOH HOH . D 4 HOH A 17 668 317 HOH HOH . D 4 HOH A 18 669 318 HOH HOH . D 4 HOH A 19 670 319 HOH HOH . D 4 HOH A 20 671 320 HOH HOH . D 4 HOH A 21 672 321 HOH HOH . D 4 HOH A 22 673 322 HOH HOH . D 4 HOH A 23 674 323 HOH HOH . D 4 HOH A 24 675 324 HOH HOH . D 4 HOH A 25 676 325 HOH HOH . D 4 HOH A 26 677 326 HOH HOH . D 4 HOH A 27 678 327 HOH HOH . D 4 HOH A 28 679 328 HOH HOH . D 4 HOH A 29 680 329 HOH HOH . D 4 HOH A 30 681 330 HOH HOH . D 4 HOH A 31 682 331 HOH HOH . D 4 HOH A 32 683 332 HOH HOH . D 4 HOH A 33 684 333 HOH HOH . D 4 HOH A 34 685 334 HOH HOH . D 4 HOH A 35 686 335 HOH HOH . D 4 HOH A 36 687 336 HOH HOH . D 4 HOH A 37 688 337 HOH HOH . D 4 HOH A 38 689 338 HOH HOH . D 4 HOH A 39 690 339 HOH HOH . D 4 HOH A 40 691 340 HOH HOH . D 4 HOH A 41 692 341 HOH HOH . D 4 HOH A 42 693 342 HOH HOH . D 4 HOH A 43 694 343 HOH HOH . D 4 HOH A 44 695 344 HOH HOH . D 4 HOH A 45 696 345 HOH HOH . D 4 HOH A 46 697 346 HOH HOH . D 4 HOH A 47 698 347 HOH HOH . D 4 HOH A 48 699 348 HOH HOH . D 4 HOH A 49 700 349 HOH HOH . D 4 HOH A 50 701 350 HOH HOH . D 4 HOH A 51 702 351 HOH HOH . D 4 HOH A 52 703 352 HOH HOH . D 4 HOH A 53 704 353 HOH HOH . D 4 HOH A 54 705 354 HOH HOH . D 4 HOH A 55 706 355 HOH HOH . D 4 HOH A 56 707 356 HOH HOH . D 4 HOH A 57 708 357 HOH HOH . D 4 HOH A 58 709 358 HOH HOH . D 4 HOH A 59 710 359 HOH HOH . D 4 HOH A 60 711 360 HOH HOH . D 4 HOH A 61 712 361 HOH HOH . D 4 HOH A 62 713 362 HOH HOH . D 4 HOH A 63 714 363 HOH HOH . D 4 HOH A 64 715 364 HOH HOH . D 4 HOH A 65 716 365 HOH HOH . D 4 HOH A 66 717 366 HOH HOH . D 4 HOH A 67 718 367 HOH HOH . D 4 HOH A 68 719 368 HOH HOH . D 4 HOH A 69 720 369 HOH HOH . D 4 HOH A 70 721 370 HOH HOH . D 4 HOH A 71 722 371 HOH HOH . D 4 HOH A 72 723 372 HOH HOH . D 4 HOH A 73 724 373 HOH HOH . D 4 HOH A 74 725 374 HOH HOH . D 4 HOH A 75 726 375 HOH HOH . D 4 HOH A 76 727 376 HOH HOH . D 4 HOH A 77 728 377 HOH HOH . D 4 HOH A 78 729 378 HOH HOH . D 4 HOH A 79 730 380 HOH HOH . D 4 HOH A 80 731 381 HOH HOH . D 4 HOH A 81 732 382 HOH HOH . D 4 HOH A 82 733 383 HOH HOH . D 4 HOH A 83 734 384 HOH HOH . D 4 HOH A 84 735 385 HOH HOH . D 4 HOH A 85 736 386 HOH HOH . D 4 HOH A 86 737 387 HOH HOH . D 4 HOH A 87 738 388 HOH HOH . D 4 HOH A 88 739 389 HOH HOH . D 4 HOH A 89 740 390 HOH HOH . D 4 HOH A 90 741 391 HOH HOH . D 4 HOH A 91 742 392 HOH HOH . D 4 HOH A 92 743 393 HOH HOH . D 4 HOH A 93 744 394 HOH HOH . D 4 HOH A 94 745 395 HOH HOH . D 4 HOH A 95 746 396 HOH HOH . D 4 HOH A 96 747 397 HOH HOH . D 4 HOH A 97 748 398 HOH HOH . D 4 HOH A 98 749 399 HOH HOH . D 4 HOH A 99 750 400 HOH HOH . D 4 HOH A 100 751 401 HOH HOH . D 4 HOH A 101 752 402 HOH HOH . D 4 HOH A 102 753 403 HOH HOH . D 4 HOH A 103 754 404 HOH HOH . D 4 HOH A 104 755 406 HOH HOH . D 4 HOH A 105 756 407 HOH HOH . D 4 HOH A 106 757 408 HOH HOH . D 4 HOH A 107 758 409 HOH HOH . D 4 HOH A 108 759 410 HOH HOH . D 4 HOH A 109 760 411 HOH HOH . D 4 HOH A 110 761 412 HOH HOH . D 4 HOH A 111 762 413 HOH HOH . D 4 HOH A 112 763 414 HOH HOH . D 4 HOH A 113 764 415 HOH HOH . D 4 HOH A 114 765 416 HOH HOH . D 4 HOH A 115 766 417 HOH HOH . D 4 HOH A 116 767 418 HOH HOH . D 4 HOH A 117 768 419 HOH HOH . D 4 HOH A 118 769 420 HOH HOH . D 4 HOH A 119 770 421 HOH HOH . D 4 HOH A 120 771 422 HOH HOH . D 4 HOH A 121 772 423 HOH HOH . D 4 HOH A 122 773 424 HOH HOH . D 4 HOH A 123 774 425 HOH HOH . D 4 HOH A 124 775 426 HOH HOH . D 4 HOH A 125 776 427 HOH HOH . D 4 HOH A 126 777 428 HOH HOH . D 4 HOH A 127 778 429 HOH HOH . D 4 HOH A 128 779 430 HOH HOH . D 4 HOH A 129 780 432 HOH HOH . D 4 HOH A 130 781 433 HOH HOH . D 4 HOH A 131 782 434 HOH HOH . D 4 HOH A 132 783 435 HOH HOH . D 4 HOH A 133 784 436 HOH HOH . D 4 HOH A 134 785 438 HOH HOH . D 4 HOH A 135 786 439 HOH HOH . D 4 HOH A 136 787 440 HOH HOH . D 4 HOH A 137 788 441 HOH HOH . D 4 HOH A 138 789 442 HOH HOH . D 4 HOH A 139 790 443 HOH HOH . D 4 HOH A 140 791 444 HOH HOH . D 4 HOH A 141 792 445 HOH HOH . D 4 HOH A 142 793 446 HOH HOH . D 4 HOH A 143 794 447 HOH HOH . D 4 HOH A 144 795 449 HOH HOH . D 4 HOH A 145 796 450 HOH HOH . D 4 HOH A 146 797 451 HOH HOH . D 4 HOH A 147 798 452 HOH HOH . D 4 HOH A 148 799 454 HOH HOH . D 4 HOH A 149 800 455 HOH HOH . D 4 HOH A 150 801 456 HOH HOH . D 4 HOH A 151 802 458 HOH HOH . D 4 HOH A 152 803 459 HOH HOH . D 4 HOH A 153 804 460 HOH HOH . D 4 HOH A 154 805 462 HOH HOH . D 4 HOH A 155 806 463 HOH HOH . D 4 HOH A 156 807 464 HOH HOH . D 4 HOH A 157 808 465 HOH HOH . D 4 HOH A 158 809 466 HOH HOH . D 4 HOH A 159 810 467 HOH HOH . D 4 HOH A 160 811 468 HOH HOH . D 4 HOH A 161 812 470 HOH HOH . D 4 HOH A 162 813 471 HOH HOH . D 4 HOH A 163 814 474 HOH HOH . D 4 HOH A 164 815 475 HOH HOH . D 4 HOH A 165 816 476 HOH HOH . D 4 HOH A 166 817 478 HOH HOH . D 4 HOH A 167 818 479 HOH HOH . D 4 HOH A 168 819 480 HOH HOH . D 4 HOH A 169 820 481 HOH HOH . D 4 HOH A 170 821 482 HOH HOH . D 4 HOH A 171 822 483 HOH HOH . D 4 HOH A 172 823 484 HOH HOH . D 4 HOH A 173 824 486 HOH HOH . D 4 HOH A 174 825 487 HOH HOH . D 4 HOH A 175 826 488 HOH HOH . D 4 HOH A 176 827 489 HOH HOH . D 4 HOH A 177 828 490 HOH HOH . D 4 HOH A 178 829 491 HOH HOH . D 4 HOH A 179 830 493 HOH HOH . D 4 HOH A 180 831 494 HOH HOH . D 4 HOH A 181 832 495 HOH HOH . D 4 HOH A 182 833 498 HOH HOH . D 4 HOH A 183 834 499 HOH HOH . D 4 HOH A 184 835 500 HOH HOH . D 4 HOH A 185 836 501 HOH HOH . D 4 HOH A 186 837 502 HOH HOH . D 4 HOH A 187 838 503 HOH HOH . D 4 HOH A 188 839 504 HOH HOH . D 4 HOH A 189 840 505 HOH HOH . D 4 HOH A 190 841 506 HOH HOH . D 4 HOH A 191 842 507 HOH HOH . D 4 HOH A 192 843 510 HOH HOH . D 4 HOH A 193 844 511 HOH HOH . D 4 HOH A 194 845 512 HOH HOH . D 4 HOH A 195 846 513 HOH HOH . D 4 HOH A 196 847 514 HOH HOH . D 4 HOH A 197 848 516 HOH HOH . D 4 HOH A 198 849 517 HOH HOH . D 4 HOH A 199 850 518 HOH HOH . D 4 HOH A 200 851 525 HOH HOH . D 4 HOH A 201 852 526 HOH HOH . D 4 HOH A 202 853 527 HOH HOH . D 4 HOH A 203 854 532 HOH HOH . D 4 HOH A 204 855 534 HOH HOH . D 4 HOH A 205 856 535 HOH HOH . D 4 HOH A 206 857 536 HOH HOH . D 4 HOH A 207 858 537 HOH HOH . D 4 HOH A 208 859 538 HOH HOH . D 4 HOH A 209 860 539 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AZA . . . C 3 30.286 27.728 36.684 1 14.3 ? N1 AZA 651 A 1 HETATM 2 C C2 AZA . . . C 3 29.604 27.474 37.819 1 14.58 ? C2 AZA 651 A 1 HETATM 3 O O2 AZA . . . C 3 28.444 27.917 37.924 1 15.66 ? O2 AZA 651 A 1 HETATM 4 N N3 AZA . . . C 3 30.136 26.775 38.861 1 14.1 ? N3 AZA 651 A 1 HETATM 5 C C4 AZA . . . C 3 31.362 26.268 38.701 1 13.88 ? C4 AZA 651 A 1 HETATM 6 C C5 AZA . . . C 3 32.149 26.483 37.525 1 13.92 ? C5 AZA 651 A 1 HETATM 7 C C6 AZA . . . C 3 31.53 27.274 36.444 1 13.77 ? C6 AZA 651 A 1 HETATM 8 O O6 AZA . . . C 3 32.193 27.518 35.397 1 16.37 ? O6 AZA 651 A 1 HETATM 9 N N7 AZA . . . C 3 33.371 25.869 37.646 1 15.03 ? N7 AZA 651 A 1 HETATM 10 N N8 AZA . . . C 3 33.289 25.303 38.936 1 14.14 ? N8 AZA 651 A 1 HETATM 11 N N9 AZA . . . C 3 32.063 25.529 39.619 1 14.54 ? N9 AZA 651 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 11 #