data_2IBJ # _model_server_result.job_id tyjyADBLECMrtTh0oEvClQ _model_server_result.datetime_utc '2025-08-31 01:13:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ibj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 2IBJ # _exptl.entry_id 2IBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IBJ _cell.length_a 33.201 _cell.length_b 40.222 _cell.length_c 70.245 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 39 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.935 ? metalc ? metalc2 A NE2 HIS 41 A HIS 39 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.14 ? metalc ? metalc3 A NE2 HIS 65 A HIS 63 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.929 ? metalc ? metalc4 A NE2 HIS 65 A HIS 63 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 B MG MG . A MG 301 1_555 E O HOH . A HOH 328 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc6 B MG MG . A MG 301 1_555 E O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 B MG MG . A MG 301 1_555 E O HOH . A HOH 400 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc8 B MG MG . A MG 301 1_555 E O HOH . A HOH 422 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc9 B MG MG . A MG 301 1_555 E O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc10 B MG MG . A MG 301 1_555 E O HOH . A HOH 462 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc11 C MG MG . A MG 302 1_555 E O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc12 C MG MG . A MG 302 1_555 E O HOH . A HOH 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc13 C MG MG . A MG 302 1_555 E O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc14 C MG MG . A MG 302 1_555 E O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc15 C MG MG . A MG 302 1_555 E O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2IBJ _atom_sites.fract_transf_matrix[1][1] 0.03012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 301 MG MG . C 2 MG A 1 302 302 MG MG . D 3 HEM A 1 201 201 HEM HEM . E 4 HOH A 1 303 1 HOH HOH . E 4 HOH A 2 304 2 HOH HOH . E 4 HOH A 3 305 3 HOH HOH . E 4 HOH A 4 306 4 HOH HOH . E 4 HOH A 5 307 5 HOH HOH . E 4 HOH A 6 308 6 HOH HOH . E 4 HOH A 7 309 7 HOH HOH . E 4 HOH A 8 310 8 HOH HOH . E 4 HOH A 9 311 9 HOH HOH . E 4 HOH A 10 312 10 HOH HOH . E 4 HOH A 11 313 11 HOH HOH . E 4 HOH A 12 314 12 HOH HOH . E 4 HOH A 13 315 13 HOH HOH . E 4 HOH A 14 316 14 HOH HOH . E 4 HOH A 15 317 15 HOH HOH . E 4 HOH A 16 318 16 HOH HOH . E 4 HOH A 17 319 17 HOH HOH . E 4 HOH A 18 320 18 HOH HOH . E 4 HOH A 19 321 19 HOH HOH . E 4 HOH A 20 322 20 HOH HOH . E 4 HOH A 21 323 21 HOH HOH . E 4 HOH A 22 324 22 HOH HOH . E 4 HOH A 23 325 23 HOH HOH . E 4 HOH A 24 326 24 HOH HOH . E 4 HOH A 25 327 25 HOH HOH . E 4 HOH A 26 328 26 HOH HOH . E 4 HOH A 27 329 27 HOH HOH . E 4 HOH A 28 330 28 HOH HOH . E 4 HOH A 29 331 29 HOH HOH . E 4 HOH A 30 332 30 HOH HOH . E 4 HOH A 31 333 31 HOH HOH . E 4 HOH A 32 334 32 HOH HOH . E 4 HOH A 33 335 33 HOH HOH . E 4 HOH A 34 336 34 HOH HOH . E 4 HOH A 35 337 35 HOH HOH . E 4 HOH A 36 338 36 HOH HOH . E 4 HOH A 37 339 37 HOH HOH . E 4 HOH A 38 340 38 HOH HOH . E 4 HOH A 39 341 39 HOH HOH . E 4 HOH A 40 342 40 HOH HOH . E 4 HOH A 41 343 41 HOH HOH . E 4 HOH A 42 344 42 HOH HOH . E 4 HOH A 43 345 43 HOH HOH . E 4 HOH A 44 346 44 HOH HOH . E 4 HOH A 45 347 45 HOH HOH . E 4 HOH A 46 348 46 HOH HOH . E 4 HOH A 47 349 47 HOH HOH . E 4 HOH A 48 350 48 HOH HOH . E 4 HOH A 49 351 49 HOH HOH . E 4 HOH A 50 352 50 HOH HOH . E 4 HOH A 51 353 51 HOH HOH . E 4 HOH A 52 354 52 HOH HOH . E 4 HOH A 53 355 53 HOH HOH . E 4 HOH A 54 356 54 HOH HOH . E 4 HOH A 55 357 55 HOH HOH . E 4 HOH A 56 358 56 HOH HOH . E 4 HOH A 57 359 57 HOH HOH . E 4 HOH A 58 360 58 HOH HOH . E 4 HOH A 59 361 59 HOH HOH . E 4 HOH A 60 362 60 HOH HOH . E 4 HOH A 61 363 61 HOH HOH . E 4 HOH A 62 364 62 HOH HOH . E 4 HOH A 63 365 63 HOH HOH . E 4 HOH A 64 366 64 HOH HOH . E 4 HOH A 65 367 65 HOH HOH . E 4 HOH A 66 368 66 HOH HOH . E 4 HOH A 67 369 67 HOH HOH . E 4 HOH A 68 370 68 HOH HOH . E 4 HOH A 69 371 69 HOH HOH . E 4 HOH A 70 372 70 HOH HOH . E 4 HOH A 71 373 71 HOH HOH . E 4 HOH A 72 374 72 HOH HOH . E 4 HOH A 73 375 73 HOH HOH . E 4 HOH A 74 376 74 HOH HOH . E 4 HOH A 75 377 75 HOH HOH . E 4 HOH A 76 378 76 HOH HOH . E 4 HOH A 77 379 77 HOH HOH . E 4 HOH A 78 380 78 HOH HOH . E 4 HOH A 79 381 79 HOH HOH . E 4 HOH A 80 382 80 HOH HOH . E 4 HOH A 81 383 81 HOH HOH . E 4 HOH A 82 384 82 HOH HOH . E 4 HOH A 83 385 83 HOH HOH . E 4 HOH A 84 386 85 HOH HOH . E 4 HOH A 85 387 87 HOH HOH . E 4 HOH A 86 388 88 HOH HOH . E 4 HOH A 87 389 89 HOH HOH . E 4 HOH A 88 390 90 HOH HOH . E 4 HOH A 89 391 91 HOH HOH . E 4 HOH A 90 392 92 HOH HOH . E 4 HOH A 91 393 93 HOH HOH . E 4 HOH A 92 394 94 HOH HOH . E 4 HOH A 93 395 95 HOH HOH . E 4 HOH A 94 396 96 HOH HOH . E 4 HOH A 95 397 97 HOH HOH . E 4 HOH A 96 398 98 HOH HOH . E 4 HOH A 97 399 99 HOH HOH . E 4 HOH A 98 400 100 HOH HOH . E 4 HOH A 99 401 101 HOH HOH . E 4 HOH A 100 402 102 HOH HOH . E 4 HOH A 101 403 103 HOH HOH . E 4 HOH A 102 404 104 HOH HOH . E 4 HOH A 103 405 105 HOH HOH . E 4 HOH A 104 406 106 HOH HOH . E 4 HOH A 105 407 107 HOH HOH . E 4 HOH A 106 408 109 HOH HOH . E 4 HOH A 107 409 110 HOH HOH . E 4 HOH A 108 410 111 HOH HOH . E 4 HOH A 109 411 112 HOH HOH . E 4 HOH A 110 412 113 HOH HOH . E 4 HOH A 111 413 114 HOH HOH . E 4 HOH A 112 414 115 HOH HOH . E 4 HOH A 113 415 116 HOH HOH . E 4 HOH A 114 416 118 HOH HOH . E 4 HOH A 115 417 120 HOH HOH . E 4 HOH A 116 418 121 HOH HOH . E 4 HOH A 117 419 122 HOH HOH . E 4 HOH A 118 420 123 HOH HOH . E 4 HOH A 119 421 124 HOH HOH . E 4 HOH A 120 422 125 HOH HOH . E 4 HOH A 121 423 126 HOH HOH . E 4 HOH A 122 424 128 HOH HOH . E 4 HOH A 123 425 129 HOH HOH . E 4 HOH A 124 426 130 HOH HOH . E 4 HOH A 125 427 131 HOH HOH . E 4 HOH A 126 428 132 HOH HOH . E 4 HOH A 127 429 133 HOH HOH . E 4 HOH A 128 430 134 HOH HOH . E 4 HOH A 129 431 135 HOH HOH . E 4 HOH A 130 432 136 HOH HOH . E 4 HOH A 131 433 137 HOH HOH . E 4 HOH A 132 434 138 HOH HOH . E 4 HOH A 133 435 139 HOH HOH . E 4 HOH A 134 436 140 HOH HOH . E 4 HOH A 135 437 141 HOH HOH . E 4 HOH A 136 438 142 HOH HOH . E 4 HOH A 137 439 143 HOH HOH . E 4 HOH A 138 440 144 HOH HOH . E 4 HOH A 139 441 145 HOH HOH . E 4 HOH A 140 442 146 HOH HOH . E 4 HOH A 141 443 147 HOH HOH . E 4 HOH A 142 444 148 HOH HOH . E 4 HOH A 143 445 149 HOH HOH . E 4 HOH A 144 446 150 HOH HOH . E 4 HOH A 145 447 151 HOH HOH . E 4 HOH A 146 448 152 HOH HOH . E 4 HOH A 147 449 153 HOH HOH . E 4 HOH A 148 450 154 HOH HOH . E 4 HOH A 149 451 155 HOH HOH . E 4 HOH A 150 452 156 HOH HOH . E 4 HOH A 151 453 157 HOH HOH . E 4 HOH A 152 454 159 HOH HOH . E 4 HOH A 153 455 160 HOH HOH . E 4 HOH A 154 456 161 HOH HOH . E 4 HOH A 155 457 162 HOH HOH . E 4 HOH A 156 458 163 HOH HOH . E 4 HOH A 157 459 165 HOH HOH . E 4 HOH A 158 460 167 HOH HOH . E 4 HOH A 159 461 168 HOH HOH . E 4 HOH A 160 462 169 HOH HOH . E 4 HOH A 161 463 170 HOH HOH . E 4 HOH A 162 464 171 HOH HOH . E 4 HOH A 163 465 173 HOH HOH . E 4 HOH A 164 466 176 HOH HOH . E 4 HOH A 165 467 177 HOH HOH . E 4 HOH A 166 468 178 HOH HOH . E 4 HOH A 167 469 179 HOH HOH . E 4 HOH A 168 470 180 HOH HOH . E 4 HOH A 169 471 182 HOH HOH . E 4 HOH A 170 472 183 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.827 _atom_site.Cartn_y 1.362 _atom_site.Cartn_z 17.675 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 16.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #