data_2IC3 # _model_server_result.job_id VZWb07MIwU2bToI0kYUl6A _model_server_result.datetime_utc '2024-12-21 12:38:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ic3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":562}' # _entry.id 2IC3 # _exptl.entry_id 2IC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.461 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-4-ISOPROPOXYCARBONYL-6-METHOXY-3-METHYLTHIOMETHYL-3,4-DIHYDROQUINOXALIN-2(1H)-THIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.39 _cell.angle_gamma 90 _cell.entry_id 2IC3 _cell.length_a 223.21 _cell.length_b 67.61 _cell.length_c 103.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 443 A ASP 443 1_555 C MN MN . A MN 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc2 A OD2 ASP 443 A ASP 443 1_555 C MN MN . A MN 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc3 A OE1 GLU 478 A GLU 478 1_555 C MN MN . A MN 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A OD2 ASP 498 A ASP 498 1_555 C MN MN . A MN 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc5 C MN MN . A MN 561 1_555 E O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 C MN MN . A MN 561 1_555 E O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? # _chem_comp.formula 'C15 H20 N2 O3 S2' _chem_comp.formula_weight 340.461 _chem_comp.id HBY _chem_comp.mon_nstd_flag . _chem_comp.name (S)-4-ISOPROPOXYCARBONYL-6-METHOXY-3-METHYLTHIOMETHYL-3,4-DIHYDROQUINOXALIN-2(1H)-THIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HBY 097' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HBY sing 129 n n C1 C13 HBY sing 130 n n C1 N1 HBY sing 131 n n C1 H1 HBY sing 132 n n C2 N2 HBY sing 133 n n C2 S1 HBY doub 134 n n C3 C4 HBY doub 135 n y C3 C8 HBY sing 136 n y C3 N2 HBY sing 137 n n C4 C5 HBY sing 138 n y C4 N1 HBY sing 139 n n C5 C6 HBY doub 140 n y C5 H5 HBY sing 141 n n C6 C7 HBY sing 142 n y C6 O3 HBY sing 143 n n C7 C8 HBY doub 144 n y C7 H7 HBY sing 145 n n C8 H8 HBY sing 146 n n C9 N1 HBY sing 147 n n C9 O1 HBY doub 148 n n C9 O2 HBY sing 149 n n C10 C12 HBY sing 150 n n C10 C11 HBY sing 151 n n C10 O2 HBY sing 152 n n C10 H10 HBY sing 153 n n C12 H121 HBY sing 154 n n C12 H122 HBY sing 155 n n C12 H123 HBY sing 156 n n C11 H111 HBY sing 157 n n C11 H112 HBY sing 158 n n C11 H113 HBY sing 159 n n C13 S2 HBY sing 160 n n C13 H131 HBY sing 161 n n C13 H132 HBY sing 162 n n C14 S2 HBY sing 163 n n C14 H141 HBY sing 164 n n C14 H142 HBY sing 165 n n C14 H143 HBY sing 166 n n C15 O3 HBY sing 167 n n C15 H151 HBY sing 168 n n C15 H152 HBY sing 169 n n C15 H153 HBY sing 170 n n N2 HN2 HBY sing 171 n n # _atom_sites.entry_id 2IC3 _atom_sites.fract_transf_matrix[1][1] 0.00448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001489 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 561 1 MN MN . D 4 HBY A 1 562 2 HBY HBY . E 5 HOH A 1 563 3 HOH HOH . E 5 HOH A 2 564 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HBY . . . D 4 141.31 -22.975 69.091 1 90.2 ? C1 HBY 562 A 1 HETATM 2 C C2 HBY . . . D 4 140.467 -23.794 68.104 1 91.11 ? C2 HBY 562 A 1 HETATM 3 C C3 HBY . . . D 4 140.094 -25.555 69.646 1 92.95 ? C3 HBY 562 A 1 HETATM 4 C C4 HBY . . . D 4 140.822 -24.903 70.709 1 92.62 ? C4 HBY 562 A 1 HETATM 5 C C5 HBY . . . D 4 141.281 -25.696 71.826 1 95.46 ? C5 HBY 562 A 1 HETATM 6 C C6 HBY . . . D 4 140.996 -27.106 71.894 1 96.54 ? C6 HBY 562 A 1 HETATM 7 C C7 HBY . . . D 4 140.263 -27.727 70.82 1 94.08 ? C7 HBY 562 A 1 HETATM 8 C C8 HBY . . . D 4 139.811 -26.959 69.707 1 93.87 ? C8 HBY 562 A 1 HETATM 9 C C9 HBY . . . D 4 141.765 -22.798 71.529 1 89.08 ? C9 HBY 562 A 1 HETATM 10 C C10 HBY . . . D 4 141.325 -21.987 73.637 1 91.84 ? C10 HBY 562 A 1 HETATM 11 C C12 HBY . . . D 4 139.92 -22.17 74.239 1 91.32 ? C12 HBY 562 A 1 HETATM 12 C C11 HBY . . . D 4 142.37 -21.932 74.766 1 89.43 ? C11 HBY 562 A 1 HETATM 13 C C13 HBY . . . D 4 142.768 -22.956 68.644 1 90.04 ? C13 HBY 562 A 1 HETATM 14 C C14 HBY . . . D 4 144.653 -24.39 67.652 1 88.3 ? C14 HBY 562 A 1 HETATM 15 C C15 HBY . . . D 4 141.79 -29.212 72.925 1 98.16 ? C15 HBY 562 A 1 HETATM 16 N N1 HBY . . . D 4 141.019 -23.463 70.519 1 89.66 ? N1 HBY 562 A 1 HETATM 17 N N2 HBY . . . D 4 139.631 -24.771 68.522 1 93.04 ? N2 HBY 562 A 1 HETATM 18 O O1 HBY . . . D 4 142.657 -21.839 71.267 1 92.2 ? O1 HBY 562 A 1 HETATM 19 O O2 HBY . . . D 4 141.615 -23.05 72.709 1 88.95 ? O2 HBY 562 A 1 HETATM 20 O O3 HBY . . . D 4 141.433 -27.827 72.985 1 96.99 ? O3 HBY 562 A 1 HETATM 21 S S1 HBY . . . D 4 140.56 -23.457 66.354 1 96.33 ? S1 HBY 562 A 1 HETATM 22 S S2 HBY . . . D 4 143.684 -24.365 69.174 1 90.43 ? S2 HBY 562 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #