data_2IC8
#
_model_server_result.job_id            1yOQ6T2tgXCRjFjrCao_lQ 
_model_server_result.datetime_utc      '2024-11-22 21:18:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ic8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    2IC8 
#
_exptl.entry_id    2IC8 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2IC8 
_cell.length_a            110.822 
_cell.length_b            110.822 
_cell.length_c            127.611 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IC8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BNG sing 70 n n 
C1 O1 BNG sing 71 n n 
C1 O5 BNG sing 72 n n 
C1 H1 BNG sing 73 n n 
C2 C3 BNG sing 74 n n 
C2 O2 BNG sing 75 n n 
C2 H2 BNG sing 76 n n 
C3 C4 BNG sing 77 n n 
C3 O3 BNG sing 78 n n 
C3 H3 BNG sing 79 n n 
C4 C5 BNG sing 80 n n 
C4 O4 BNG sing 81 n n 
C4 H4 BNG sing 82 n n 
C5 C6 BNG sing 83 n n 
C5 O5 BNG sing 84 n n 
C5 H5 BNG sing 85 n n 
C6 O6 BNG sing 86 n n 
C6 H61 BNG sing 87 n n 
C6 H62 BNG sing 88 n n 
C1' C2' BNG sing 89 n n 
C1' O1 BNG sing 90 n n 
C1' "H1'1" BNG sing 91 n n 
C1' "H1'2" BNG sing 92 n n 
C2' C3' BNG sing 93 n n 
C2' "H2'1" BNG sing 94 n n 
C2' "H2'2" BNG sing 95 n n 
C3' C4' BNG sing 96 n n 
C3' "H3'1" BNG sing 97 n n 
C3' "H3'2" BNG sing 98 n n 
C4' C5' BNG sing 99 n n 
C4' "H4'1" BNG sing 100 n n 
C4' "H4'2" BNG sing 101 n n 
C5' C6' BNG sing 102 n n 
C5' "H5'1" BNG sing 103 n n 
C5' "H5'2" BNG sing 104 n n 
C6' C7' BNG sing 105 n n 
C6' "H6'1" BNG sing 106 n n 
C6' "H6'2" BNG sing 107 n n 
C7' C8' BNG sing 108 n n 
C7' "H7'1" BNG sing 109 n n 
C7' "H7'2" BNG sing 110 n n 
C8' C9' BNG sing 111 n n 
C8' "H8'1" BNG sing 112 n n 
C8' "H8'2" BNG sing 113 n n 
C9' "H9'1" BNG sing 114 n n 
C9' "H9'2" BNG sing 115 n n 
C9' "H9'3" BNG sing 116 n n 
O2 HO2 BNG sing 117 n n 
O3 HO3 BNG sing 118 n n 
O4 HO4 BNG sing 119 n n 
O6 HO6 BNG sing 120 n n 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     2IC8 
_atom_sites.fract_transf_matrix[1][1]    0.009023 
_atom_sites.fract_transf_matrix[1][2]    0.00521 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010419 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007836 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BNG A 1 501 501 BNG BNG . 
C 2 BNG A 1 502 502 BNG BNG . 
D 2 BNG A 1 503 503 BNG BNG . 
E 2 BNG A 1 504 504 BNG BNG . 
F 2 BNG A 1 505 505 BNG BNG . 
G 2 BNG A 1 506 506 BNG BNG . 
H 2 BNG A 1 507 507 BNG BNG . 
I 2 BNG A 1 508 508 BNG BNG . 
J 2 BNG A 1 509 509 BNG BNG . 
K 2 BNG A 1 510 510 BNG BNG . 
L 2 BNG A 1 511 511 BNG BNG . 
M 2 BNG A 1 512 512 BNG BNG . 
N 3 HOH A 1 1 1 HOH HOH . 
N 3 HOH A 2 2 2 HOH HOH . 
N 3 HOH A 3 3 3 HOH HOH . 
N 3 HOH A 4 4 4 HOH HOH . 
N 3 HOH A 5 5 5 HOH HOH . 
N 3 HOH A 6 6 6 HOH HOH . 
N 3 HOH A 7 7 7 HOH HOH . 
N 3 HOH A 8 8 8 HOH HOH . 
N 3 HOH A 9 9 9 HOH HOH . 
N 3 HOH A 10 10 10 HOH HOH . 
N 3 HOH A 11 11 11 HOH HOH . 
N 3 HOH A 12 12 12 HOH HOH . 
N 3 HOH A 13 13 13 HOH HOH . 
N 3 HOH A 14 14 14 HOH HOH . 
N 3 HOH A 15 15 15 HOH HOH . 
N 3 HOH A 16 16 16 HOH HOH . 
N 3 HOH A 17 17 17 HOH HOH . 
N 3 HOH A 18 18 18 HOH HOH . 
N 3 HOH A 19 19 19 HOH HOH . 
N 3 HOH A 20 20 20 HOH HOH . 
N 3 HOH A 21 21 21 HOH HOH . 
N 3 HOH A 22 22 22 HOH HOH . 
N 3 HOH A 23 23 23 HOH HOH . 
N 3 HOH A 24 24 24 HOH HOH . 
N 3 HOH A 25 25 25 HOH HOH . 
N 3 HOH A 26 26 26 HOH HOH . 
N 3 HOH A 27 27 27 HOH HOH . 
N 3 HOH A 28 28 28 HOH HOH . 
N 3 HOH A 29 29 29 HOH HOH . 
N 3 HOH A 30 30 30 HOH HOH . 
N 3 HOH A 31 31 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNG . . . B 2 3.848 57.049 52.3 1 43.76 ? C1 BNG 501 A 1 
HETATM 2 C C2 BNG . . . B 2 4.03 57.725 53.671 1 45.25 ? C2 BNG 501 A 1 
HETATM 3 C C3 BNG . . . B 2 5.239 57.122 54.388 1 45.37 ? C3 BNG 501 A 1 
HETATM 4 C C4 BNG . . . B 2 5.08 55.604 54.495 1 45.09 ? C4 BNG 501 A 1 
HETATM 5 C C5 BNG . . . B 2 4.865 55.015 53.094 1 43.94 ? C5 BNG 501 A 1 
HETATM 6 C C6 BNG . . . B 2 4.601 53.526 53.153 1 42.51 ? C6 BNG 501 A 1 
HETATM 7 C C1' BNG . . . B 2 2.637 57.542 50.283 1 43.49 ? C1' BNG 501 A 1 
HETATM 8 C C2' BNG . . . B 2 1.175 57.765 49.892 1 44.43 ? C2' BNG 501 A 1 
HETATM 9 C C3' BNG . . . B 2 1.091 57.689 48.37 1 45.94 ? C3' BNG 501 A 1 
HETATM 10 C C4' BNG . . . B 2 -0.357 57.666 47.867 1 47.68 ? C4' BNG 501 A 1 
HETATM 11 C C5' BNG . . . B 2 -0.36 57.51 46.339 1 47.91 ? C5' BNG 501 A 1 
HETATM 12 C C6' BNG . . . B 2 -1.755 57.551 45.74 1 48.23 ? C6' BNG 501 A 1 
HETATM 13 C C7' BNG . . . B 2 -1.687 57.52 44.207 1 48.39 ? C7' BNG 501 A 1 
HETATM 14 C C8' BNG . . . B 2 -3.08 57.675 43.582 1 50.09 ? C8' BNG 501 A 1 
HETATM 15 C C9' BNG . . . B 2 -3.684 59.015 44.034 1 49.68 ? C9' BNG 501 A 1 
HETATM 16 O O1 BNG . . . B 2 2.69 57.521 51.702 1 43.04 ? O1 BNG 501 A 1 
HETATM 17 O O2 BNG . . . B 2 4.219 59.127 53.505 1 44.87 ? O2 BNG 501 A 1 
HETATM 18 O O3 BNG . . . B 2 5.373 57.682 55.686 1 46.19 ? O3 BNG 501 A 1 
HETATM 19 O O4 BNG . . . B 2 6.242 55.042 55.087 1 44.04 ? O4 BNG 501 A 1 
HETATM 20 O O5 BNG . . . B 2 3.706 55.629 52.468 1 44.21 ? O5 BNG 501 A 1 
HETATM 21 O O6 BNG . . . B 2 3.343 53.258 53.757 1 41.07 ? O6 BNG 501 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#