data_2IC8 # _model_server_result.job_id UzOk2J2wouQ4biYLTziOnA _model_server_result.datetime_utc '2024-11-05 04:29:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ic8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 2IC8 # _exptl.entry_id 2IC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.395 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'nonyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2IC8 _cell.length_a 110.822 _cell.length_b 110.822 _cell.length_c 127.611 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # _chem_comp.formula 'C15 H30 O6' _chem_comp.formula_weight 306.395 _chem_comp.id BNG _chem_comp.mon_nstd_flag n _chem_comp.name 'nonyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNG sing 70 n n C1 O1 BNG sing 71 n n C1 O5 BNG sing 72 n n C1 H1 BNG sing 73 n n C2 C3 BNG sing 74 n n C2 O2 BNG sing 75 n n C2 H2 BNG sing 76 n n C3 C4 BNG sing 77 n n C3 O3 BNG sing 78 n n C3 H3 BNG sing 79 n n C4 C5 BNG sing 80 n n C4 O4 BNG sing 81 n n C4 H4 BNG sing 82 n n C5 C6 BNG sing 83 n n C5 O5 BNG sing 84 n n C5 H5 BNG sing 85 n n C6 O6 BNG sing 86 n n C6 H61 BNG sing 87 n n C6 H62 BNG sing 88 n n C1' C2' BNG sing 89 n n C1' O1 BNG sing 90 n n C1' "H1'1" BNG sing 91 n n C1' "H1'2" BNG sing 92 n n C2' C3' BNG sing 93 n n C2' "H2'1" BNG sing 94 n n C2' "H2'2" BNG sing 95 n n C3' C4' BNG sing 96 n n C3' "H3'1" BNG sing 97 n n C3' "H3'2" BNG sing 98 n n C4' C5' BNG sing 99 n n C4' "H4'1" BNG sing 100 n n C4' "H4'2" BNG sing 101 n n C5' C6' BNG sing 102 n n C5' "H5'1" BNG sing 103 n n C5' "H5'2" BNG sing 104 n n C6' C7' BNG sing 105 n n C6' "H6'1" BNG sing 106 n n C6' "H6'2" BNG sing 107 n n C7' C8' BNG sing 108 n n C7' "H7'1" BNG sing 109 n n C7' "H7'2" BNG sing 110 n n C8' C9' BNG sing 111 n n C8' "H8'1" BNG sing 112 n n C8' "H8'2" BNG sing 113 n n C9' "H9'1" BNG sing 114 n n C9' "H9'2" BNG sing 115 n n C9' "H9'3" BNG sing 116 n n O2 HO2 BNG sing 117 n n O3 HO3 BNG sing 118 n n O4 HO4 BNG sing 119 n n O6 HO6 BNG sing 120 n n # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.identifier b-nonylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2IC8 _atom_sites.fract_transf_matrix[1][1] 0.009023 _atom_sites.fract_transf_matrix[1][2] 0.00521 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BNG A 1 501 501 BNG BNG . C 2 BNG A 1 502 502 BNG BNG . D 2 BNG A 1 503 503 BNG BNG . E 2 BNG A 1 504 504 BNG BNG . F 2 BNG A 1 505 505 BNG BNG . G 2 BNG A 1 506 506 BNG BNG . H 2 BNG A 1 507 507 BNG BNG . I 2 BNG A 1 508 508 BNG BNG . J 2 BNG A 1 509 509 BNG BNG . K 2 BNG A 1 510 510 BNG BNG . L 2 BNG A 1 511 511 BNG BNG . M 2 BNG A 1 512 512 BNG BNG . N 3 HOH A 1 1 1 HOH HOH . N 3 HOH A 2 2 2 HOH HOH . N 3 HOH A 3 3 3 HOH HOH . N 3 HOH A 4 4 4 HOH HOH . N 3 HOH A 5 5 5 HOH HOH . N 3 HOH A 6 6 6 HOH HOH . N 3 HOH A 7 7 7 HOH HOH . N 3 HOH A 8 8 8 HOH HOH . N 3 HOH A 9 9 9 HOH HOH . N 3 HOH A 10 10 10 HOH HOH . N 3 HOH A 11 11 11 HOH HOH . N 3 HOH A 12 12 12 HOH HOH . N 3 HOH A 13 13 13 HOH HOH . N 3 HOH A 14 14 14 HOH HOH . N 3 HOH A 15 15 15 HOH HOH . N 3 HOH A 16 16 16 HOH HOH . N 3 HOH A 17 17 17 HOH HOH . N 3 HOH A 18 18 18 HOH HOH . N 3 HOH A 19 19 19 HOH HOH . N 3 HOH A 20 20 20 HOH HOH . N 3 HOH A 21 21 21 HOH HOH . N 3 HOH A 22 22 22 HOH HOH . N 3 HOH A 23 23 23 HOH HOH . N 3 HOH A 24 24 24 HOH HOH . N 3 HOH A 25 25 25 HOH HOH . N 3 HOH A 26 26 26 HOH HOH . N 3 HOH A 27 27 27 HOH HOH . N 3 HOH A 28 28 28 HOH HOH . N 3 HOH A 29 29 29 HOH HOH . N 3 HOH A 30 30 30 HOH HOH . N 3 HOH A 31 31 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNG . . . H 2 -10.142 40.399 28.051 1 60.09 ? C1 BNG 507 A 1 HETATM 2 C C2 BNG . . . H 2 -9.744 41.51 27.063 1 59.96 ? C2 BNG 507 A 1 HETATM 3 C C3 BNG . . . H 2 -8.689 40.982 26.085 1 60.4 ? C3 BNG 507 A 1 HETATM 4 C C4 BNG . . . H 2 -7.5 40.407 26.855 1 60.2 ? C4 BNG 507 A 1 HETATM 5 C C5 BNG . . . H 2 -7.993 39.356 27.847 1 59.32 ? C5 BNG 507 A 1 HETATM 6 C C6 BNG . . . H 2 -6.881 38.779 28.705 1 58.09 ? C6 BNG 507 A 1 HETATM 7 C C1' BNG . . . H 2 -12.036 40.005 29.46 1 59.74 ? C1' BNG 507 A 1 HETATM 8 O O1 BNG . . . H 2 -11.031 40.901 28.996 1 59.35 ? O1 BNG 507 A 1 HETATM 9 O O2 BNG . . . H 2 -10.892 41.925 26.345 1 61.4 ? O2 BNG 507 A 1 HETATM 10 O O3 BNG . . . H 2 -8.239 42.022 25.225 1 60.29 ? O3 BNG 507 A 1 HETATM 11 O O4 BNG . . . H 2 -6.597 39.797 25.941 1 61.21 ? O4 BNG 507 A 1 HETATM 12 O O5 BNG . . . H 2 -8.977 39.922 28.741 1 59.67 ? O5 BNG 507 A 1 HETATM 13 O O6 BNG . . . H 2 -5.713 39.584 28.641 1 58.08 ? O6 BNG 507 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #