data_2ICA # _model_server_result.job_id Qr501yrn3u_QkuagMr2ojQ _model_server_result.datetime_utc '2024-11-23 01:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ica # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2ICA # _exptl.entry_id 2ICA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 555.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(5S,9R)-9-(4-CYANOPHENYL)-3-(3,5-DICHLOROPHENYL)-1-METHYL-2,4-DIOXO-1,3,7-TRIAZASPIRO [4.4]NON-7-YL]METHYL]-3-THIOPHENECARBOXYLICACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ICA _cell.length_a 40.3 _cell.length_b 63.4 _cell.length_c 63.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ICA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H20 Cl2 N4 O4 S' _chem_comp.formula_weight 555.432 _chem_comp.id 2IC _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(5S,9R)-9-(4-CYANOPHENYL)-3-(3,5-DICHLOROPHENYL)-1-METHYL-2,4-DIOXO-1,3,7-TRIAZASPIRO [4.4]NON-7-YL]METHYL]-3-THIOPHENECARBOXYLICACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 CL1 2IC sing 1 n n C2 C9 2IC doub 2 n y C2 C3 2IC sing 3 n y C3 C5 2IC doub 4 n y C3 H3 2IC sing 5 n n C8 C9 2IC sing 6 n y C8 N11 2IC sing 7 n n C8 C6 2IC doub 8 n y C9 H9 2IC sing 9 n n C12 N11 2IC sing 10 n n C12 N13 2IC sing 11 n n C12 O56 2IC doub 12 n n C14 C22 2IC sing 13 n n C14 C15 2IC sing 14 n n C14 C50 2IC sing 15 n n C14 N13 2IC sing 16 n n C15 N18 2IC sing 17 n n C15 H151 2IC sing 18 n n C15 H152 2IC sing 19 n n N18 C36 2IC sing 20 n n N18 C19 2IC sing 21 n n C19 C22 2IC sing 22 n n C19 H191 2IC sing 23 n n C19 H192 2IC sing 24 n n C22 C24 2IC sing 25 n n C22 H22 2IC sing 26 n n C24 C32 2IC sing 27 n y C24 C25 2IC doub 28 n y C27 C29 2IC doub 29 n y C27 C25 2IC sing 30 n y C27 H27 2IC sing 31 n n C30 C32 2IC doub 32 n y C30 C29 2IC sing 33 n y C30 H30 2IC sing 34 n n C32 H32 2IC sing 35 n n C34 N35 2IC trip 36 n n C34 C29 2IC sing 37 n n C5 C6 2IC sing 38 n y C5 CL57 2IC sing 39 n n C6 H6 2IC sing 40 n n N11 C50 2IC sing 41 n n N13 C52 2IC sing 42 n n C25 H25 2IC sing 43 n n C36 C39 2IC sing 44 n n C36 H361 2IC sing 45 n n C36 H362 2IC sing 46 n n C39 C44 2IC doub 47 n y C39 S40 2IC sing 48 n y S40 C41 2IC sing 49 n y C41 C43 2IC doub 50 n y C41 H41 2IC sing 51 n n C43 C46 2IC sing 52 n n C43 C44 2IC sing 53 n y C44 H44 2IC sing 54 n n C46 O47 2IC doub 55 n n C46 O48 2IC sing 56 n n O48 HO48 2IC sing 57 n n C50 O51 2IC doub 58 n n C52 H521 2IC sing 59 n n C52 H522 2IC sing 60 n n C52 H523 2IC sing 61 n n # _atom_sites.entry_id 2ICA _atom_sites.fract_transf_matrix[1][1] 0.024814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2IC A 1 1 1 2IC 2IC . C 3 HOH A 1 308 1 HOH HOH . C 3 HOH A 2 309 2 HOH HOH . C 3 HOH A 3 310 3 HOH HOH . C 3 HOH A 4 311 4 HOH HOH . C 3 HOH A 5 312 5 HOH HOH . C 3 HOH A 6 313 6 HOH HOH . C 3 HOH A 7 314 7 HOH HOH . C 3 HOH A 8 315 8 HOH HOH . C 3 HOH A 9 316 9 HOH HOH . C 3 HOH A 10 317 10 HOH HOH . C 3 HOH A 11 318 11 HOH HOH . C 3 HOH A 12 319 12 HOH HOH . C 3 HOH A 13 320 13 HOH HOH . C 3 HOH A 14 321 14 HOH HOH . C 3 HOH A 15 322 15 HOH HOH . C 3 HOH A 16 323 16 HOH HOH . C 3 HOH A 17 324 17 HOH HOH . C 3 HOH A 18 325 18 HOH HOH . C 3 HOH A 19 326 19 HOH HOH . C 3 HOH A 20 327 20 HOH HOH . C 3 HOH A 21 328 21 HOH HOH . C 3 HOH A 22 329 22 HOH HOH . C 3 HOH A 23 330 23 HOH HOH . C 3 HOH A 24 331 24 HOH HOH . C 3 HOH A 25 332 25 HOH HOH . C 3 HOH A 26 333 26 HOH HOH . C 3 HOH A 27 334 27 HOH HOH . C 3 HOH A 28 335 28 HOH HOH . C 3 HOH A 29 336 29 HOH HOH . C 3 HOH A 30 337 31 HOH HOH . C 3 HOH A 31 338 32 HOH HOH . C 3 HOH A 32 339 33 HOH HOH . C 3 HOH A 33 340 34 HOH HOH . C 3 HOH A 34 341 35 HOH HOH . C 3 HOH A 35 342 36 HOH HOH . C 3 HOH A 36 343 37 HOH HOH . C 3 HOH A 37 344 38 HOH HOH . C 3 HOH A 38 345 39 HOH HOH . C 3 HOH A 39 346 40 HOH HOH . C 3 HOH A 40 347 41 HOH HOH . C 3 HOH A 41 348 42 HOH HOH . C 3 HOH A 42 349 43 HOH HOH . C 3 HOH A 43 350 44 HOH HOH . C 3 HOH A 44 351 45 HOH HOH . C 3 HOH A 45 352 46 HOH HOH . C 3 HOH A 46 353 47 HOH HOH . C 3 HOH A 47 354 49 HOH HOH . C 3 HOH A 48 355 50 HOH HOH . C 3 HOH A 49 356 51 HOH HOH . C 3 HOH A 50 357 52 HOH HOH . C 3 HOH A 51 358 53 HOH HOH . C 3 HOH A 52 359 54 HOH HOH . C 3 HOH A 53 360 55 HOH HOH . C 3 HOH A 54 361 56 HOH HOH . C 3 HOH A 55 362 57 HOH HOH . C 3 HOH A 56 363 58 HOH HOH . C 3 HOH A 57 364 59 HOH HOH . C 3 HOH A 58 365 60 HOH HOH . C 3 HOH A 59 366 61 HOH HOH . C 3 HOH A 60 367 62 HOH HOH . C 3 HOH A 61 368 63 HOH HOH . C 3 HOH A 62 369 64 HOH HOH . C 3 HOH A 63 370 65 HOH HOH . C 3 HOH A 64 371 66 HOH HOH . C 3 HOH A 65 372 67 HOH HOH . C 3 HOH A 66 373 68 HOH HOH . C 3 HOH A 67 374 69 HOH HOH . C 3 HOH A 68 375 70 HOH HOH . C 3 HOH A 69 376 71 HOH HOH . C 3 HOH A 70 377 72 HOH HOH . C 3 HOH A 71 378 73 HOH HOH . C 3 HOH A 72 379 74 HOH HOH . C 3 HOH A 73 380 75 HOH HOH . C 3 HOH A 74 381 76 HOH HOH . C 3 HOH A 75 382 77 HOH HOH . C 3 HOH A 76 383 78 HOH HOH . C 3 HOH A 77 384 79 HOH HOH . C 3 HOH A 78 385 80 HOH HOH . C 3 HOH A 79 386 81 HOH HOH . C 3 HOH A 80 387 82 HOH HOH . C 3 HOH A 81 388 83 HOH HOH . C 3 HOH A 82 389 84 HOH HOH . C 3 HOH A 83 390 85 HOH HOH . C 3 HOH A 84 391 86 HOH HOH . C 3 HOH A 85 392 87 HOH HOH . C 3 HOH A 86 393 88 HOH HOH . C 3 HOH A 87 394 89 HOH HOH . C 3 HOH A 88 395 90 HOH HOH . C 3 HOH A 89 396 91 HOH HOH . C 3 HOH A 90 397 92 HOH HOH . C 3 HOH A 91 398 93 HOH HOH . C 3 HOH A 92 399 94 HOH HOH . C 3 HOH A 93 400 95 HOH HOH . C 3 HOH A 94 401 96 HOH HOH . C 3 HOH A 95 402 97 HOH HOH . C 3 HOH A 96 403 98 HOH HOH . C 3 HOH A 97 404 99 HOH HOH . C 3 HOH A 98 405 100 HOH HOH . C 3 HOH A 99 406 101 HOH HOH . C 3 HOH A 100 407 102 HOH HOH . C 3 HOH A 101 408 103 HOH HOH . C 3 HOH A 102 409 104 HOH HOH . C 3 HOH A 103 410 105 HOH HOH . C 3 HOH A 104 411 106 HOH HOH . C 3 HOH A 105 412 107 HOH HOH . C 3 HOH A 106 413 108 HOH HOH . C 3 HOH A 107 414 109 HOH HOH . C 3 HOH A 108 415 110 HOH HOH . C 3 HOH A 109 416 111 HOH HOH . C 3 HOH A 110 417 112 HOH HOH . C 3 HOH A 111 418 113 HOH HOH . C 3 HOH A 112 419 114 HOH HOH . C 3 HOH A 113 420 115 HOH HOH . C 3 HOH A 114 421 116 HOH HOH . C 3 HOH A 115 422 117 HOH HOH . C 3 HOH A 116 423 118 HOH HOH . C 3 HOH A 117 424 119 HOH HOH . C 3 HOH A 118 425 120 HOH HOH . C 3 HOH A 119 426 121 HOH HOH . C 3 HOH A 120 427 122 HOH HOH . C 3 HOH A 121 428 123 HOH HOH . C 3 HOH A 122 429 124 HOH HOH . C 3 HOH A 123 430 125 HOH HOH . C 3 HOH A 124 431 126 HOH HOH . C 3 HOH A 125 432 127 HOH HOH . C 3 HOH A 126 433 128 HOH HOH . C 3 HOH A 127 434 129 HOH HOH . C 3 HOH A 128 435 130 HOH HOH . C 3 HOH A 129 436 131 HOH HOH . C 3 HOH A 130 437 132 HOH HOH . C 3 HOH A 131 438 133 HOH HOH . C 3 HOH A 132 439 134 HOH HOH . C 3 HOH A 133 440 135 HOH HOH . C 3 HOH A 134 441 136 HOH HOH . C 3 HOH A 135 442 137 HOH HOH . C 3 HOH A 136 443 138 HOH HOH . C 3 HOH A 137 444 139 HOH HOH . C 3 HOH A 138 445 140 HOH HOH . C 3 HOH A 139 446 141 HOH HOH . C 3 HOH A 140 447 142 HOH HOH . C 3 HOH A 141 448 143 HOH HOH . C 3 HOH A 142 449 144 HOH HOH . C 3 HOH A 143 450 145 HOH HOH . C 3 HOH A 144 451 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 2IC . . . B 2 -5.917 -0.346 28.375 1 9.98 ? C2 2IC 1 A 1 HETATM 2 C C3 2IC . . . B 2 -5.387 -0.125 29.65 1 11.14 ? C3 2IC 1 A 1 HETATM 3 C C8 2IC . . . B 2 -7.819 1.103 28.826 1 10.57 ? C8 2IC 1 A 1 HETATM 4 C C9 2IC . . . B 2 -7.12 0.236 27.944 1 10.47 ? C9 2IC 1 A 1 HETATM 5 C C12 2IC . . . B 2 -10.135 1.702 29.19 1 10.02 ? C12 2IC 1 A 1 HETATM 6 C C14 2IC . . . B 2 -10.703 2.537 27.099 1 12.18 ? C14 2IC 1 A 1 HETATM 7 C C15 2IC . . . B 2 -10.949 3.946 26.541 1 15.45 ? C15 2IC 1 A 1 HETATM 8 N N18 2IC . . . B 2 -11.736 3.771 25.294 1 18.8 ? N18 2IC 1 A 1 HETATM 9 C C19 2IC . . . B 2 -11.478 2.426 24.81 1 16.07 ? C19 2IC 1 A 1 HETATM 10 C C22 2IC . . . B 2 -11.36 1.613 26.077 1 13.92 ? C22 2IC 1 A 1 HETATM 11 C C24 2IC . . . B 2 -10.801 0.221 25.975 1 12.45 ? C24 2IC 1 A 1 HETATM 12 C C27 2IC . . . B 2 -10.802 -2.061 26.873 1 13.23 ? C27 2IC 1 A 1 HETATM 13 C C30 2IC . . . B 2 -9.171 -1.424 25.175 1 12.36 ? C30 2IC 1 A 1 HETATM 14 C C32 2IC . . . B 2 -9.722 -0.133 25.116 1 12.46 ? C32 2IC 1 A 1 HETATM 15 C C34 2IC . . . B 2 -9.198 -3.709 26.055 1 14.1 ? C34 2IC 1 A 1 HETATM 16 CL CL1 2IC . . . B 2 -5.055 -1.4 27.31 1 12.33 ? CL1 2IC 1 A 1 HETATM 17 C C5 2IC . . . B 2 -6.108 0.709 30.506 1 11 ? C5 2IC 1 A 1 HETATM 18 C C6 2IC . . . B 2 -7.297 1.334 30.112 1 10.99 ? C6 2IC 1 A 1 HETATM 19 N N11 2IC . . . B 2 -8.992 1.682 28.448 1 10.61 ? N11 2IC 1 A 1 HETATM 20 N N13 2IC . . . B 2 -11.112 2.26 28.466 1 13.27 ? N13 2IC 1 A 1 HETATM 21 C C25 2IC . . . B 2 -11.358 -0.773 26.813 1 12.77 ? C25 2IC 1 A 1 HETATM 22 C C29 2IC . . . B 2 -9.715 -2.379 26.047 1 13.06 ? C29 2IC 1 A 1 HETATM 23 N N35 2IC . . . B 2 -8.804 -4.798 26.033 1 17.19 ? N35 2IC 1 A 1 HETATM 24 C C36 2IC . . . B 2 -11.491 4.637 24.137 1 23.65 ? C36 2IC 1 A 1 HETATM 25 C C39 2IC . . . B 2 -12.183 5.953 24.29 1 27 ? C39 2IC 1 A 1 HETATM 26 S S40 2IC . . . B 2 -11.35 7.222 25.155 1 31.4 ? S40 2IC 1 A 1 HETATM 27 C C41 2IC . . . B 2 -12.753 8.256 25.014 1 31.75 ? C41 2IC 1 A 1 HETATM 28 C C43 2IC . . . B 2 -13.667 7.726 24.19 1 33.29 ? C43 2IC 1 A 1 HETATM 29 C C44 2IC . . . B 2 -13.355 6.355 23.766 1 29.68 ? C44 2IC 1 A 1 HETATM 30 C C46 2IC . . . B 2 -14.857 8.487 23.744 1 35.42 ? C46 2IC 1 A 1 HETATM 31 O O47 2IC . . . B 2 -15.603 7.973 22.883 1 37.67 ? O47 2IC 1 A 1 HETATM 32 O O48 2IC . . . B 2 -15.066 9.62 24.229 1 37.74 ? O48 2IC 1 A 1 HETATM 33 C C50 2IC . . . B 2 -9.202 2.233 27.223 1 12.32 ? C50 2IC 1 A 1 HETATM 34 O O51 2IC . . . B 2 -8.385 2.467 26.333 1 10.78 ? O51 2IC 1 A 1 HETATM 35 C C52 2IC . . . B 2 -12.487 2.44 28.931 1 13.75 ? C52 2IC 1 A 1 HETATM 36 O O56 2IC . . . B 2 -10.282 1.274 30.333 1 11.67 ? O56 2IC 1 A 1 HETATM 37 CL CL57 2IC . . . B 2 -5.53 0.945 32.105 1 13.37 ? CL57 2IC 1 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #