data_2ICE # _model_server_result.job_id R9ZAc3NFN2vecSaamdFjtg _model_server_result.datetime_utc '2024-10-14 08:23:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ice # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":645}' # _entry.id 2ICE # _exptl.entry_id 2ICE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.91 _cell.angle_gamma 90 _cell.entry_id 2ICE _cell.length_a 384.936 _cell.length_b 65.213 _cell.length_c 147.676 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ICE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J 1 1 E,F,G,H,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n I NAG 1 G 1 NAG G 1 NAG 5 n I NAG 2 G 2 NAG G 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 537 A CYS 537 1_555 B SG CYS 68 B CYS 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 605 A CYS 605 1_555 A SG CYS 640 A CYS 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 125 B CYS 851 1_555 C SG CYS 193 C CYS 1491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? disulf ? disulf4 C SG CYS 38 C CYS 1336 1_555 C SG CYS 169 C CYS 1467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 C SG CYS 69 C CYS 1367 1_555 C SG CYS 138 C CYS 1436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 C SG CYS 186 C CYS 1484 1_555 C SG CYS 191 C CYS 1489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 C SG CYS 317 C CYS 1615 1_555 C SG CYS 326 C CYS 1624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf8 D SG CYS 23 S CYS 22 1_555 D SG CYS 95 S CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 E SG CYS 537 D CYS 537 1_555 F SG CYS 68 E CYS 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf10 E SG CYS 605 D CYS 605 1_555 E SG CYS 640 D CYS 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf11 G SG CYS 38 F CYS 1336 1_555 G SG CYS 169 F CYS 1467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 G SG CYS 69 F CYS 1367 1_555 G SG CYS 138 F CYS 1436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 G SG CYS 186 F CYS 1484 1_555 G SG CYS 191 F CYS 1489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 G SG CYS 317 F CYS 1615 1_555 G SG CYS 326 F CYS 1624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf15 H SG CYS 23 T CYS 22 1_555 H SG CYS 95 T CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 63 A ASN 63 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 I O4 NAG . G NAG 1 1_555 I C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A O PRO 505 A PRO 505 1_555 J CA CA . A CA 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A OD1 ASP 532 A ASP 532 1_555 J CA CA . A CA 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 A O VAL 533 A VAL 533 1_555 J CA CA . A CA 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 A OD1 ASP 535 A ASP 535 1_555 J CA CA . A CA 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 E O PRO 505 D PRO 505 1_555 K CA CA . D CA 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc6 E OD1 ASP 532 D ASP 532 1_555 K CA CA . D CA 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc7 E O VAL 533 D VAL 533 1_555 K CA CA . D CA 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc8 E OD1 ASP 535 D ASP 535 1_555 K CA CA . D CA 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ICE _atom_sites.fract_transf_matrix[1][1] 0.002598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000596 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 6 CA A 1 645 1 CA CA . K 6 CA D 1 643 2 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 6 _atom_site.Cartn_x 28.67 _atom_site.Cartn_y -1.523 _atom_site.Cartn_z 1.285 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 645 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #