data_2IDF
#
_model_server_result.job_id            VB-A-ofgesSrT2uCDonStw 
_model_server_result.datetime_utc      '2024-11-29 05:03:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2idf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":204}' 
#
_entry.id    2IDF 
#
_exptl.entry_id    2IDF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRIS-HYDROXYMETHYL-METHYL-AMMONIUM 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2IDF 
_cell.length_a            48.004 
_cell.length_b            48.004 
_cell.length_c            283.399 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IDF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A SG CYS 42 A CYS 42 1_555 F C2 OPP . A OPP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? 
covale ? covale2 F C3' OPP . A OPP 205 1_555 B SG CYS 42 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? 
metalc ? metalc1 A N ALA 1 A ALA 1 1_555 D NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc2 A O ALA 1 A ALA 1 1_555 D NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc3 A ND1 HIS 46 A HIS 46 1_555 C CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc4 A ND1 HIS 117 A HIS 117 1_555 C CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc5 E O4 144 . A 144 203 1_555 D NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc6 D NI NI . A NI 301 1_555 J O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc7 B N ALA 1 B ALA 1 1_555 H NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc8 B O ALA 1 B ALA 1 1_555 H NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc9 B ND1 HIS 46 B HIS 46 1_555 G CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc10 B ND1 HIS 117 B HIS 117 1_555 G CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc11 I O4 144 . B 144 204 1_555 H NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc12 H NI NI . B NI 302 1_555 K O HOH . B HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                144 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TRIS-HYDROXYMETHYL-METHYL-AMMONIUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N 144 sing 1 n n 
C1 H11 144 sing 2 n n 
C1 H12 144 sing 3 n n 
C1 H13 144 sing 4 n n 
N C2 144 sing 5 n n 
N C3 144 sing 6 n n 
N C4 144 sing 7 n n 
C2 O2 144 sing 8 n n 
C2 H21 144 sing 9 n n 
C2 H22 144 sing 10 n n 
O2 HO2 144 sing 11 n n 
C3 O3 144 sing 12 n n 
C3 H31 144 sing 13 n n 
C3 H32 144 sing 14 n n 
O3 HO3 144 sing 15 n n 
C4 O4 144 sing 16 n n 
C4 H41 144 sing 17 n n 
C4 H42 144 sing 18 n n 
O4 HO4 144 sing 19 n n 
#
_atom_sites.entry_id                     2IDF 
_atom_sites.fract_transf_matrix[1][1]    0.020832 
_atom_sites.fract_transf_matrix[1][2]    0.012027 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024054 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003529 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CU A 1 129 129 CU TY1 . 
D 3 NI A 1 301 1 NI NI2 . 
E 4 144 A 1 203 3 144 TRS . 
F 5 OPP A 1 205 5 OPP BME . 
G 2 CU B 1 129 129 CU TY1 . 
H 3 NI B 1 302 2 NI NI2 . 
I 4 144 B 1 204 4 144 TRS . 
J 6 HOH A 1 302 1 HOH HOH . 
J 6 HOH A 2 303 2 HOH HOH . 
J 6 HOH A 3 304 3 HOH HOH . 
J 6 HOH A 4 305 4 HOH HOH . 
J 6 HOH A 5 306 5 HOH HOH . 
J 6 HOH A 6 307 6 HOH HOH . 
J 6 HOH A 7 308 7 HOH HOH . 
J 6 HOH A 8 309 8 HOH HOH . 
J 6 HOH A 9 310 9 HOH HOH . 
J 6 HOH A 10 311 10 HOH HOH . 
J 6 HOH A 11 312 11 HOH HOH . 
J 6 HOH A 12 313 12 HOH HOH . 
J 6 HOH A 13 314 13 HOH HOH . 
J 6 HOH A 14 315 14 HOH HOH . 
J 6 HOH A 15 316 15 HOH HOH . 
J 6 HOH A 16 317 16 HOH HOH . 
J 6 HOH A 17 318 17 HOH HOH . 
J 6 HOH A 18 319 18 HOH HOH . 
J 6 HOH A 19 320 19 HOH HOH . 
J 6 HOH A 20 321 20 HOH HOH . 
J 6 HOH A 21 322 21 HOH HOH . 
J 6 HOH A 22 323 23 HOH HOH . 
J 6 HOH A 23 324 24 HOH HOH . 
J 6 HOH A 24 325 25 HOH HOH . 
J 6 HOH A 25 326 26 HOH HOH . 
J 6 HOH A 26 327 27 HOH HOH . 
J 6 HOH A 27 328 28 HOH HOH . 
J 6 HOH A 28 329 29 HOH HOH . 
J 6 HOH A 29 330 30 HOH HOH . 
J 6 HOH A 30 331 31 HOH HOH . 
J 6 HOH A 31 332 32 HOH HOH . 
J 6 HOH A 32 333 33 HOH HOH . 
J 6 HOH A 33 334 34 HOH HOH . 
J 6 HOH A 34 335 35 HOH HOH . 
J 6 HOH A 35 336 36 HOH HOH . 
J 6 HOH A 36 337 37 HOH HOH . 
J 6 HOH A 37 338 38 HOH HOH . 
J 6 HOH A 38 339 39 HOH HOH . 
J 6 HOH A 39 340 40 HOH HOH . 
J 6 HOH A 40 341 41 HOH HOH . 
J 6 HOH A 41 342 42 HOH HOH . 
J 6 HOH A 42 343 43 HOH HOH . 
J 6 HOH A 43 344 44 HOH HOH . 
J 6 HOH A 44 345 66 HOH HOH . 
J 6 HOH A 45 346 90 HOH HOH . 
J 6 HOH A 46 347 91 HOH HOH . 
J 6 HOH A 47 348 93 HOH HOH . 
J 6 HOH A 48 349 94 HOH HOH . 
J 6 HOH A 49 350 95 HOH HOH . 
J 6 HOH A 50 351 101 HOH HOH . 
J 6 HOH A 51 352 102 HOH HOH . 
J 6 HOH A 52 353 103 HOH HOH . 
J 6 HOH A 53 354 104 HOH HOH . 
J 6 HOH A 54 355 105 HOH HOH . 
J 6 HOH A 55 356 106 HOH HOH . 
J 6 HOH A 56 357 107 HOH HOH . 
J 6 HOH A 57 358 108 HOH HOH . 
J 6 HOH A 58 359 109 HOH HOH . 
J 6 HOH A 59 360 110 HOH HOH . 
J 6 HOH A 60 361 111 HOH HOH . 
J 6 HOH A 61 362 112 HOH HOH . 
J 6 HOH A 62 363 113 HOH HOH . 
J 6 HOH A 63 364 114 HOH HOH . 
K 6 HOH B 1 303 22 HOH HOH . 
K 6 HOH B 2 304 45 HOH HOH . 
K 6 HOH B 3 305 46 HOH HOH . 
K 6 HOH B 4 306 47 HOH HOH . 
K 6 HOH B 5 307 48 HOH HOH . 
K 6 HOH B 6 308 49 HOH HOH . 
K 6 HOH B 7 309 50 HOH HOH . 
K 6 HOH B 8 310 51 HOH HOH . 
K 6 HOH B 9 311 52 HOH HOH . 
K 6 HOH B 10 312 53 HOH HOH . 
K 6 HOH B 11 313 54 HOH HOH . 
K 6 HOH B 12 314 55 HOH HOH . 
K 6 HOH B 13 315 56 HOH HOH . 
K 6 HOH B 14 316 57 HOH HOH . 
K 6 HOH B 15 317 58 HOH HOH . 
K 6 HOH B 16 318 59 HOH HOH . 
K 6 HOH B 17 319 60 HOH HOH . 
K 6 HOH B 18 320 61 HOH HOH . 
K 6 HOH B 19 321 62 HOH HOH . 
K 6 HOH B 20 322 63 HOH HOH . 
K 6 HOH B 21 323 64 HOH HOH . 
K 6 HOH B 22 324 65 HOH HOH . 
K 6 HOH B 23 325 67 HOH HOH . 
K 6 HOH B 24 326 68 HOH HOH . 
K 6 HOH B 25 327 69 HOH HOH . 
K 6 HOH B 26 328 70 HOH HOH . 
K 6 HOH B 27 329 71 HOH HOH . 
K 6 HOH B 28 330 72 HOH HOH . 
K 6 HOH B 29 331 73 HOH HOH . 
K 6 HOH B 30 332 74 HOH HOH . 
K 6 HOH B 31 333 75 HOH HOH . 
K 6 HOH B 32 334 76 HOH HOH . 
K 6 HOH B 33 335 77 HOH HOH . 
K 6 HOH B 34 336 78 HOH HOH . 
K 6 HOH B 35 337 79 HOH HOH . 
K 6 HOH B 36 338 80 HOH HOH . 
K 6 HOH B 37 339 81 HOH HOH . 
K 6 HOH B 38 340 82 HOH HOH . 
K 6 HOH B 39 341 83 HOH HOH . 
K 6 HOH B 40 342 84 HOH HOH . 
K 6 HOH B 41 343 85 HOH HOH . 
K 6 HOH B 42 344 86 HOH HOH . 
K 6 HOH B 43 345 87 HOH HOH . 
K 6 HOH B 44 346 88 HOH HOH . 
K 6 HOH B 45 347 89 HOH HOH . 
K 6 HOH B 46 348 92 HOH HOH . 
K 6 HOH B 47 349 96 HOH HOH . 
K 6 HOH B 48 350 97 HOH HOH . 
K 6 HOH B 49 351 98 HOH HOH . 
K 6 HOH B 50 352 99 HOH HOH . 
K 6 HOH B 51 353 100 HOH HOH . 
K 6 HOH B 52 354 115 HOH HOH . 
K 6 HOH B 53 355 116 HOH HOH . 
K 6 HOH B 54 356 117 HOH HOH . 
K 6 HOH B 55 357 118 HOH HOH . 
K 6 HOH B 56 358 119 HOH HOH . 
K 6 HOH B 57 359 120 HOH HOH . 
K 6 HOH B 58 360 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 144 . . . I 4 -1.539 25.367 -2.485 1 43.51 ? C1 144 204 B 1 
HETATM 2 N N 144 . . . I 4 -1.772 26.746 -2.088 1 49.06 ? N 144 204 B 1 
HETATM 3 C C2 144 . . . I 4 -1.185 26.895 -0.714 1 40.54 ? C2 144 204 B 1 
HETATM 4 O O2 144 . . . I 4 0.158 26.264 -0.077 1 56.32 ? O2 144 204 B 1 
HETATM 5 C C3 144 . . . I 4 -1.076 27.602 -3.133 1 40.99 ? C3 144 204 B 1 
HETATM 6 O O3 144 . . . I 4 -1.044 29.004 -2.818 1 46.85 ? O3 144 204 B 1 
HETATM 7 C C4 144 . . . I 4 -3.255 26.956 -2.005 1 46.42 ? C4 144 204 B 1 
HETATM 8 O O4 144 . . . I 4 -4.269 26.413 -1.282 1 49.84 ? O4 144 204 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#