data_2IDL # _model_server_result.job_id AZGulhMxqiZy0J2TpN8NIA _model_server_result.datetime_utc '2024-11-05 01:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2idl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2IDL # _exptl.entry_id 2IDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.92 _cell.angle_gamma 90 _cell.entry_id 2IDL _cell.length_a 52.665 _cell.length_b 62.359 _cell.length_c 63.415 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 14 B ASP 11 1_555 D NA NA . B NA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 B OE2 GLU 16 B GLU 13 1_555 D NA NA . B NA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 B OE1 GLU 103 B GLU 100 4_545 D NA NA . B NA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 B O GLU 103 B GLU 100 4_545 D NA NA . B NA 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 D NA NA . B NA 115 1_555 F O HOH . B HOH 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 D NA NA . B NA 115 1_555 F O HOH . B HOH 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc7 D NA NA . B NA 115 1_555 F O HOH . B HOH 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2IDL _atom_sites.fract_transf_matrix[1][1] 0.018988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003663 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1001 1001 GOL GOL . D 3 NA B 1 115 1 NA NA . E 4 HOH A 1 1002 2 HOH HOH . E 4 HOH A 2 1003 10 HOH HOH . E 4 HOH A 3 1004 21 HOH HOH . E 4 HOH A 4 1005 24 HOH HOH . E 4 HOH A 5 1006 28 HOH HOH . E 4 HOH A 6 1007 29 HOH HOH . E 4 HOH A 7 1008 30 HOH HOH . E 4 HOH A 8 1009 33 HOH HOH . E 4 HOH A 9 1010 34 HOH HOH . E 4 HOH A 10 1011 35 HOH HOH . E 4 HOH A 11 1012 41 HOH HOH . E 4 HOH A 12 1013 42 HOH HOH . E 4 HOH A 13 1014 51 HOH HOH . E 4 HOH A 14 1015 52 HOH HOH . E 4 HOH A 15 1016 54 HOH HOH . E 4 HOH A 16 1017 56 HOH HOH . E 4 HOH A 17 1018 59 HOH HOH . E 4 HOH A 18 1019 60 HOH HOH . E 4 HOH A 19 1020 62 HOH HOH . E 4 HOH A 20 1021 64 HOH HOH . E 4 HOH A 21 1022 65 HOH HOH . E 4 HOH A 22 1023 68 HOH HOH . E 4 HOH A 23 1024 70 HOH HOH . E 4 HOH A 24 1025 71 HOH HOH . E 4 HOH A 25 1026 75 HOH HOH . E 4 HOH A 26 1027 76 HOH HOH . E 4 HOH A 27 1028 78 HOH HOH . E 4 HOH A 28 1029 86 HOH HOH . E 4 HOH A 29 1030 87 HOH HOH . E 4 HOH A 30 1031 88 HOH HOH . E 4 HOH A 31 1032 89 HOH HOH . E 4 HOH A 32 1033 92 HOH HOH . E 4 HOH A 33 1034 97 HOH HOH . E 4 HOH A 34 1035 99 HOH HOH . E 4 HOH A 35 1036 103 HOH HOH . E 4 HOH A 36 1037 105 HOH HOH . E 4 HOH A 37 1038 107 HOH HOH . E 4 HOH A 38 1039 108 HOH HOH . E 4 HOH A 39 1040 110 HOH HOH . E 4 HOH A 40 1041 112 HOH HOH . E 4 HOH A 41 1042 118 HOH HOH . E 4 HOH A 42 1043 119 HOH HOH . E 4 HOH A 43 1044 124 HOH HOH . E 4 HOH A 44 1045 126 HOH HOH . E 4 HOH A 45 1046 133 HOH HOH . E 4 HOH A 46 1047 135 HOH HOH . E 4 HOH A 47 1048 141 HOH HOH . E 4 HOH A 48 1049 143 HOH HOH . E 4 HOH A 49 1050 146 HOH HOH . E 4 HOH A 50 1051 156 HOH HOH . E 4 HOH A 51 1052 163 HOH HOH . E 4 HOH A 52 1053 165 HOH HOH . E 4 HOH A 53 1054 173 HOH HOH . E 4 HOH A 54 1055 186 HOH HOH . E 4 HOH A 55 1056 188 HOH HOH . E 4 HOH A 56 1057 194 HOH HOH . E 4 HOH A 57 1058 200 HOH HOH . E 4 HOH A 58 1059 201 HOH HOH . E 4 HOH A 59 1060 202 HOH HOH . E 4 HOH A 60 1061 203 HOH HOH . E 4 HOH A 61 1062 206 HOH HOH . E 4 HOH A 62 1063 207 HOH HOH . E 4 HOH A 63 1064 209 HOH HOH . F 4 HOH B 1 116 3 HOH HOH . F 4 HOH B 2 117 4 HOH HOH . F 4 HOH B 3 118 5 HOH HOH . F 4 HOH B 4 119 6 HOH HOH . F 4 HOH B 5 120 7 HOH HOH . F 4 HOH B 6 121 8 HOH HOH . F 4 HOH B 7 122 9 HOH HOH . F 4 HOH B 8 123 11 HOH HOH . F 4 HOH B 9 124 12 HOH HOH . F 4 HOH B 10 125 13 HOH HOH . F 4 HOH B 11 126 14 HOH HOH . F 4 HOH B 12 127 15 HOH HOH . F 4 HOH B 13 128 16 HOH HOH . F 4 HOH B 14 129 17 HOH HOH . F 4 HOH B 15 130 18 HOH HOH . F 4 HOH B 16 131 19 HOH HOH . F 4 HOH B 17 132 20 HOH HOH . F 4 HOH B 18 133 22 HOH HOH . F 4 HOH B 19 134 23 HOH HOH . F 4 HOH B 20 135 25 HOH HOH . F 4 HOH B 21 136 26 HOH HOH . F 4 HOH B 22 137 27 HOH HOH . F 4 HOH B 23 138 31 HOH HOH . F 4 HOH B 24 139 36 HOH HOH . F 4 HOH B 25 140 37 HOH HOH . F 4 HOH B 26 141 39 HOH HOH . F 4 HOH B 27 142 40 HOH HOH . F 4 HOH B 28 143 43 HOH HOH . F 4 HOH B 29 144 44 HOH HOH . F 4 HOH B 30 145 45 HOH HOH . F 4 HOH B 31 146 46 HOH HOH . F 4 HOH B 32 147 47 HOH HOH . F 4 HOH B 33 148 48 HOH HOH . F 4 HOH B 34 149 49 HOH HOH . F 4 HOH B 35 150 50 HOH HOH . F 4 HOH B 36 151 53 HOH HOH . F 4 HOH B 37 152 55 HOH HOH . F 4 HOH B 38 153 57 HOH HOH . F 4 HOH B 39 154 58 HOH HOH . F 4 HOH B 40 155 61 HOH HOH . F 4 HOH B 41 156 63 HOH HOH . F 4 HOH B 42 157 66 HOH HOH . F 4 HOH B 43 158 67 HOH HOH . F 4 HOH B 44 159 69 HOH HOH . F 4 HOH B 45 160 72 HOH HOH . F 4 HOH B 46 161 73 HOH HOH . F 4 HOH B 47 162 74 HOH HOH . F 4 HOH B 48 163 77 HOH HOH . F 4 HOH B 49 164 82 HOH HOH . F 4 HOH B 50 165 83 HOH HOH . F 4 HOH B 51 166 84 HOH HOH . F 4 HOH B 52 167 85 HOH HOH . F 4 HOH B 53 168 91 HOH HOH . F 4 HOH B 54 169 93 HOH HOH . F 4 HOH B 55 170 94 HOH HOH . F 4 HOH B 56 171 95 HOH HOH . F 4 HOH B 57 172 96 HOH HOH . F 4 HOH B 58 173 98 HOH HOH . F 4 HOH B 59 174 100 HOH HOH . F 4 HOH B 60 175 101 HOH HOH . F 4 HOH B 61 176 106 HOH HOH . F 4 HOH B 62 177 109 HOH HOH . F 4 HOH B 63 178 114 HOH HOH . F 4 HOH B 64 179 115 HOH HOH . F 4 HOH B 65 180 116 HOH HOH . F 4 HOH B 66 181 120 HOH HOH . F 4 HOH B 67 182 122 HOH HOH . F 4 HOH B 68 183 123 HOH HOH . F 4 HOH B 69 184 125 HOH HOH . F 4 HOH B 70 185 129 HOH HOH . F 4 HOH B 71 186 131 HOH HOH . F 4 HOH B 72 187 132 HOH HOH . F 4 HOH B 73 188 138 HOH HOH . F 4 HOH B 74 189 139 HOH HOH . F 4 HOH B 75 190 140 HOH HOH . F 4 HOH B 76 191 142 HOH HOH . F 4 HOH B 77 192 144 HOH HOH . F 4 HOH B 78 193 145 HOH HOH . F 4 HOH B 79 194 147 HOH HOH . F 4 HOH B 80 195 148 HOH HOH . F 4 HOH B 81 196 149 HOH HOH . F 4 HOH B 82 197 150 HOH HOH . F 4 HOH B 83 198 151 HOH HOH . F 4 HOH B 84 199 152 HOH HOH . F 4 HOH B 85 200 154 HOH HOH . F 4 HOH B 86 201 155 HOH HOH . F 4 HOH B 87 202 157 HOH HOH . F 4 HOH B 88 203 158 HOH HOH . F 4 HOH B 89 204 161 HOH HOH . F 4 HOH B 90 205 164 HOH HOH . F 4 HOH B 91 206 166 HOH HOH . F 4 HOH B 92 207 167 HOH HOH . F 4 HOH B 93 208 168 HOH HOH . F 4 HOH B 94 209 171 HOH HOH . F 4 HOH B 95 210 172 HOH HOH . F 4 HOH B 96 211 174 HOH HOH . F 4 HOH B 97 212 175 HOH HOH . F 4 HOH B 98 213 176 HOH HOH . F 4 HOH B 99 214 177 HOH HOH . F 4 HOH B 100 215 178 HOH HOH . F 4 HOH B 101 216 179 HOH HOH . F 4 HOH B 102 217 180 HOH HOH . F 4 HOH B 103 218 181 HOH HOH . F 4 HOH B 104 219 184 HOH HOH . F 4 HOH B 105 220 185 HOH HOH . F 4 HOH B 106 221 191 HOH HOH . F 4 HOH B 107 222 196 HOH HOH . F 4 HOH B 108 223 197 HOH HOH . F 4 HOH B 109 224 198 HOH HOH . F 4 HOH B 110 225 199 HOH HOH . F 4 HOH B 111 226 204 HOH HOH . F 4 HOH B 112 227 205 HOH HOH . F 4 HOH B 113 228 208 HOH HOH . F 4 HOH B 114 229 210 HOH HOH . F 4 HOH B 115 230 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 0.217 18.381 8.107 1 42.1 ? C1 GOL 1001 A 1 HETATM 2 O O1 GOL . . . C 2 1.249 19.206 8.6 1 43.3 ? O1 GOL 1001 A 1 HETATM 3 C C2 GOL . . . C 2 -0.43 19.04 6.915 1 41.98 ? C2 GOL 1001 A 1 HETATM 4 O O2 GOL . . . C 2 -1.462 19.897 7.369 1 45.58 ? O2 GOL 1001 A 1 HETATM 5 C C3 GOL . . . C 2 -0.982 18.019 5.93 1 42.88 ? C3 GOL 1001 A 1 HETATM 6 O O3 GOL . . . C 2 -1.626 16.964 6.62 1 41.65 ? O3 GOL 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #