data_2IG3 # _model_server_result.job_id u4-TRSrGKhvWS2uubPytqQ _model_server_result.datetime_utc '2025-08-09 03:04:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ig3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":700}' # _entry.id 2IG3 # _exptl.entry_id 2IG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2IG3 _cell.length_a 95.588 _cell.length_b 95.588 _cell.length_c 65.424 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,N 1 1 B,G,H,I,J,K,L,M,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 72 A HIS 72 1_555 F FE HEM . A HEM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc2 F FE HEM . A HEM 700 1_555 C C CYN . A CYN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc3 F FE HEM . A HEM 700 1_555 C N CYN . A CYN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? metalc ? metalc4 B NE2 HIS 72 B HIS 72 1_555 M FE HEM . B HEM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc5 M FE HEM . B HEM 700 1_555 G C CYN . B CYN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc6 M FE HEM . B HEM 700 1_555 G N CYN . B CYN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 123 n n CHA C4D HEM doub 124 n n CHA HHA HEM sing 125 n n CHB C4A HEM sing 126 n n CHB C1B HEM doub 127 n n CHB HHB HEM sing 128 n n CHC C4B HEM sing 129 n n CHC C1C HEM doub 130 n n CHC HHC HEM sing 131 n n CHD C4C HEM doub 132 n n CHD C1D HEM sing 133 n n CHD HHD HEM sing 134 n n C1A C2A HEM doub 135 n y C1A NA HEM sing 136 n y C2A C3A HEM sing 137 n y C2A CAA HEM sing 138 n n C3A C4A HEM doub 139 n y C3A CMA HEM sing 140 n n C4A NA HEM sing 141 n y CMA HMA HEM sing 142 n n CMA HMAA HEM sing 143 n n CMA HMAB HEM sing 144 n n CAA CBA HEM sing 145 n n CAA HAA HEM sing 146 n n CAA HAAA HEM sing 147 n n CBA CGA HEM sing 148 n n CBA HBA HEM sing 149 n n CBA HBAA HEM sing 150 n n CGA O1A HEM doub 151 n n CGA O2A HEM sing 152 n n C1B C2B HEM sing 153 n n C1B NB HEM sing 154 n n C2B C3B HEM doub 155 n n C2B CMB HEM sing 156 n n C3B C4B HEM sing 157 n n C3B CAB HEM sing 158 n n C4B NB HEM doub 159 n n CMB HMB HEM sing 160 n n CMB HMBA HEM sing 161 n n CMB HMBB HEM sing 162 n n CAB CBB HEM doub 163 n n CAB HAB HEM sing 164 n n CBB HBB HEM sing 165 n n CBB HBBA HEM sing 166 n n C1C C2C HEM sing 167 n y C1C NC HEM sing 168 n y C2C C3C HEM doub 169 n y C2C CMC HEM sing 170 n n C3C C4C HEM sing 171 n y C3C CAC HEM sing 172 n n C4C NC HEM sing 173 n y CMC HMC HEM sing 174 n n CMC HMCA HEM sing 175 n n CMC HMCB HEM sing 176 n n CAC CBC HEM doub 177 n n CAC HAC HEM sing 178 n n CBC HBC HEM sing 179 n n CBC HBCA HEM sing 180 n n C1D C2D HEM sing 181 n n C1D ND HEM doub 182 n n C2D C3D HEM doub 183 n n C2D CMD HEM sing 184 n n C3D C4D HEM sing 185 n n C3D CAD HEM sing 186 n n C4D ND HEM sing 187 n n CMD HMD HEM sing 188 n n CMD HMDA HEM sing 189 n n CMD HMDB HEM sing 190 n n CAD CBD HEM sing 191 n n CAD HAD HEM sing 192 n n CAD HADA HEM sing 193 n n CBD CGD HEM sing 194 n n CBD HBD HEM sing 195 n n CBD HBDA HEM sing 196 n n CGD O1D HEM doub 197 n n CGD O2D HEM sing 198 n n O2A H2A HEM sing 199 n n O2D H2D HEM sing 200 n n FE NA HEM sing 201 n n FE NB HEM sing 202 n n FE NC HEM sing 203 n n FE ND HEM sing 204 n n # _atom_sites.entry_id 2IG3 _atom_sites.fract_transf_matrix[1][1] 0.010462 _atom_sites.fract_transf_matrix[1][2] 0.00604 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYN A 1 800 800 CYN CYN . D 3 ACT A 1 820 820 ACT ACT . E 4 SO4 A 1 812 812 SO4 SO4 . F 5 HEM A 1 700 700 HEM HEM . G 2 CYN B 1 800 800 CYN CYN . H 3 ACT B 1 822 822 ACT ACT . I 3 ACT B 1 823 823 ACT ACT . J 4 SO4 B 1 810 810 SO4 SO4 . K 4 SO4 B 1 811 811 SO4 SO4 . L 4 SO4 B 1 813 813 SO4 SO4 . M 5 HEM B 1 700 700 HEM HEM . N 6 HOH A 1 821 2 HOH HOH . N 6 HOH A 2 822 4 HOH HOH . N 6 HOH A 3 823 5 HOH HOH . N 6 HOH A 4 824 8 HOH HOH . N 6 HOH A 5 825 12 HOH HOH . N 6 HOH A 6 826 14 HOH HOH . N 6 HOH A 7 827 16 HOH HOH . N 6 HOH A 8 828 18 HOH HOH . N 6 HOH A 9 829 21 HOH HOH . N 6 HOH A 10 830 22 HOH HOH . N 6 HOH A 11 831 24 HOH HOH . N 6 HOH A 12 832 25 HOH HOH . N 6 HOH A 13 833 26 HOH HOH . N 6 HOH A 14 834 29 HOH HOH . N 6 HOH A 15 835 30 HOH HOH . N 6 HOH A 16 836 31 HOH HOH . N 6 HOH A 17 837 33 HOH HOH . N 6 HOH A 18 838 36 HOH HOH . N 6 HOH A 19 839 37 HOH HOH . N 6 HOH A 20 840 41 HOH HOH . N 6 HOH A 21 841 42 HOH HOH . N 6 HOH A 22 842 44 HOH HOH . N 6 HOH A 23 843 46 HOH HOH . N 6 HOH A 24 844 47 HOH HOH . N 6 HOH A 25 845 51 HOH HOH . N 6 HOH A 26 846 52 HOH HOH . N 6 HOH A 27 847 53 HOH HOH . N 6 HOH A 28 848 55 HOH HOH . N 6 HOH A 29 849 56 HOH HOH . N 6 HOH A 30 850 59 HOH HOH . N 6 HOH A 31 851 61 HOH HOH . N 6 HOH A 32 852 64 HOH HOH . N 6 HOH A 33 853 66 HOH HOH . N 6 HOH A 34 854 70 HOH HOH . N 6 HOH A 35 855 71 HOH HOH . N 6 HOH A 36 856 73 HOH HOH . N 6 HOH A 37 857 75 HOH HOH . N 6 HOH A 38 858 77 HOH HOH . N 6 HOH A 39 859 78 HOH HOH . N 6 HOH A 40 860 79 HOH HOH . N 6 HOH A 41 861 82 HOH HOH . N 6 HOH A 42 862 83 HOH HOH . N 6 HOH A 43 863 84 HOH HOH . N 6 HOH A 44 864 85 HOH HOH . N 6 HOH A 45 865 87 HOH HOH . N 6 HOH A 46 866 88 HOH HOH . N 6 HOH A 47 867 89 HOH HOH . N 6 HOH A 48 868 91 HOH HOH . N 6 HOH A 49 869 93 HOH HOH . N 6 HOH A 50 870 96 HOH HOH . O 6 HOH B 1 824 3 HOH HOH . O 6 HOH B 2 825 6 HOH HOH . O 6 HOH B 3 826 9 HOH HOH . O 6 HOH B 4 827 10 HOH HOH . O 6 HOH B 5 828 11 HOH HOH . O 6 HOH B 6 829 13 HOH HOH . O 6 HOH B 7 830 15 HOH HOH . O 6 HOH B 8 831 17 HOH HOH . O 6 HOH B 9 832 19 HOH HOH . O 6 HOH B 10 833 20 HOH HOH . O 6 HOH B 11 834 23 HOH HOH . O 6 HOH B 12 835 27 HOH HOH . O 6 HOH B 13 836 28 HOH HOH . O 6 HOH B 14 837 32 HOH HOH . O 6 HOH B 15 838 34 HOH HOH . O 6 HOH B 16 839 35 HOH HOH . O 6 HOH B 17 840 38 HOH HOH . O 6 HOH B 18 841 39 HOH HOH . O 6 HOH B 19 842 40 HOH HOH . O 6 HOH B 20 843 43 HOH HOH . O 6 HOH B 21 844 45 HOH HOH . O 6 HOH B 22 845 48 HOH HOH . O 6 HOH B 23 846 49 HOH HOH . O 6 HOH B 24 847 50 HOH HOH . O 6 HOH B 25 848 54 HOH HOH . O 6 HOH B 26 849 57 HOH HOH . O 6 HOH B 27 850 58 HOH HOH . O 6 HOH B 28 851 60 HOH HOH . O 6 HOH B 29 852 62 HOH HOH . O 6 HOH B 30 853 63 HOH HOH . O 6 HOH B 31 854 65 HOH HOH . O 6 HOH B 32 855 67 HOH HOH . O 6 HOH B 33 856 68 HOH HOH . O 6 HOH B 34 857 69 HOH HOH . O 6 HOH B 35 858 72 HOH HOH . O 6 HOH B 36 859 74 HOH HOH . O 6 HOH B 37 860 76 HOH HOH . O 6 HOH B 38 861 80 HOH HOH . O 6 HOH B 39 862 81 HOH HOH . O 6 HOH B 40 863 86 HOH HOH . O 6 HOH B 41 864 92 HOH HOH . O 6 HOH B 42 865 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . M 5 -7.409 -66.109 -2.415 1 26.39 ? CHA HEM 700 B 1 HETATM 2 C CHB HEM . . . M 5 -9.422 -64.612 -6.52 1 25.75 ? CHB HEM 700 B 1 HETATM 3 C CHC HEM . . . M 5 -9.307 -59.988 -5.005 1 25.59 ? CHC HEM 700 B 1 HETATM 4 C CHD HEM . . . M 5 -8.097 -61.61 -0.583 1 26.89 ? CHD HEM 700 B 1 HETATM 5 C C1A HEM . . . M 5 -7.977 -66.139 -3.662 1 26.83 ? C1A HEM 700 B 1 HETATM 6 C C2A HEM . . . M 5 -8.224 -67.319 -4.468 1 27.24 ? C2A HEM 700 B 1 HETATM 7 C C3A HEM . . . M 5 -8.777 -66.897 -5.616 1 26.72 ? C3A HEM 700 B 1 HETATM 8 C C4A HEM . . . M 5 -8.908 -65.444 -5.553 1 25.45 ? C4A HEM 700 B 1 HETATM 9 C CMA HEM . . . M 5 -9.218 -67.806 -6.792 1 24.67 ? CMA HEM 700 B 1 HETATM 10 C CAA HEM . . . M 5 -7.866 -68.791 -4.078 1 27.76 ? CAA HEM 700 B 1 HETATM 11 C CBA HEM . . . M 5 -6.369 -68.991 -4.358 0.4 27.43 ? CBA HEM 700 B 1 HETATM 12 C CGA HEM . . . M 5 -5.931 -70.437 -4.446 0.4 28.77 ? CGA HEM 700 B 1 HETATM 13 O O1A HEM . . . M 5 -4.987 -70.735 -5.23 0.4 27.74 ? O1A HEM 700 B 1 HETATM 14 O O2A HEM . . . M 5 -6.5 -71.301 -3.733 0.4 29.52 ? O2A HEM 700 B 1 HETATM 15 C C1B HEM . . . M 5 -9.508 -63.235 -6.506 1 25.16 ? C1B HEM 700 B 1 HETATM 16 C C2B HEM . . . M 5 -9.909 -62.404 -7.609 1 26.08 ? C2B HEM 700 B 1 HETATM 17 C C3B HEM . . . M 5 -9.871 -61.117 -7.193 1 25.96 ? C3B HEM 700 B 1 HETATM 18 C C4B HEM . . . M 5 -9.449 -61.102 -5.814 1 25.61 ? C4B HEM 700 B 1 HETATM 19 C CMB HEM . . . M 5 -10.282 -62.951 -9.006 1 25.16 ? CMB HEM 700 B 1 HETATM 20 C CAB HEM . . . M 5 -10.194 -59.823 -7.974 1 25.59 ? CAB HEM 700 B 1 HETATM 21 C CBB HEM . . . M 5 -10.803 -59.827 -9.16 1 26.98 ? CBB HEM 700 B 1 HETATM 22 C C1C HEM . . . M 5 -9.051 -60.015 -3.648 1 26.33 ? C1C HEM 700 B 1 HETATM 23 C C2C HEM . . . M 5 -9.082 -58.903 -2.723 1 26.99 ? C2C HEM 700 B 1 HETATM 24 C C3C HEM . . . M 5 -8.749 -59.368 -1.498 1 27.46 ? C3C HEM 700 B 1 HETATM 25 C C4C HEM . . . M 5 -8.485 -60.78 -1.617 1 27.3 ? C4C HEM 700 B 1 HETATM 26 C CMC HEM . . . M 5 -9.455 -57.458 -3.126 1 25.33 ? CMC HEM 700 B 1 HETATM 27 C CAC HEM . . . M 5 -8.633 -58.619 -0.146 1 27.24 ? CAC HEM 700 B 1 HETATM 28 C CBC HEM . . . M 5 -9.438 -57.603 0.176 1 29.39 ? CBC HEM 700 B 1 HETATM 29 C C1D HEM . . . M 5 -7.726 -62.926 -0.672 1 27.37 ? C1D HEM 700 B 1 HETATM 30 C C2D HEM . . . M 5 -7.11 -63.691 0.382 1 28.99 ? C2D HEM 700 B 1 HETATM 31 C C3D HEM . . . M 5 -6.898 -65.088 -0.206 1 30.05 ? C3D HEM 700 B 1 HETATM 32 C C4D HEM . . . M 5 -7.404 -65.035 -1.549 1 27.33 ? C4D HEM 700 B 1 HETATM 33 C CMD HEM . . . M 5 -6.73 -63.224 1.797 1 28.12 ? CMD HEM 700 B 1 HETATM 34 C CAD HEM . . . M 5 -6.291 -66.321 0.485 1 29.81 ? CAD HEM 700 B 1 HETATM 35 C CBD HEM . . . M 5 -4.866 -66.534 0.043 1 33.91 ? CBD HEM 700 B 1 HETATM 36 C CGD HEM . . . M 5 -4.432 -67.802 0.738 1 36.13 ? CGD HEM 700 B 1 HETATM 37 O O1D HEM . . . M 5 -4.559 -68.883 0.1 1 39.5 ? O1D HEM 700 B 1 HETATM 38 O O2D HEM . . . M 5 -3.998 -67.737 1.917 1 34.64 ? O2D HEM 700 B 1 HETATM 39 N NA HEM . . . M 5 -8.409 -65.02 -4.346 1 25.02 ? NA HEM 700 B 1 HETATM 40 N NB HEM . . . M 5 -9.245 -62.407 -5.44 1 25.86 ? NB HEM 700 B 1 HETATM 41 N NC HEM . . . M 5 -8.687 -61.14 -2.931 1 26.66 ? NC HEM 700 B 1 HETATM 42 N ND HEM . . . M 5 -7.881 -63.751 -1.781 1 26.58 ? ND HEM 700 B 1 HETATM 43 FE FE HEM . . . M 5 -8.612 -63.104 -3.623 1 24.89 ? FE HEM 700 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #