data_2IIZ # _model_server_result.job_id '_gYQmtIOOB924wPAGabd7w' _model_server_result.datetime_utc '2024-11-26 06:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2iiz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 2IIZ # _exptl.entry_id 2IIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IIZ _cell.length_a 94.837 _cell.length_b 94.837 _cell.length_c 116.666 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 6 A ASN 5 1_555 A N MSE 7 A MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C MSE 7 A MSE 6 1_555 A N PRO 8 A PRO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 A C LEU 25 A LEU 24 1_555 A N MSE 26 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 26 A MSE 25 1_555 A N PHE 27 A PHE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C GLU 81 A GLU 80 1_555 A N MSE 82 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 82 A MSE 81 1_555 A N LEU 83 A LEU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C ALA 88 A ALA 87 1_555 A N MSE 89 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 89 A MSE 88 1_555 A N GLN 90 A GLN 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C GLN 124 A GLN 123 1_555 A N MSE 125 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 125 A MSE 124 1_555 A N PHE 126 A PHE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C PHE 141 A PHE 140 1_555 A N MSE 142 A MSE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 A C MSE 142 A MSE 141 1_555 A N ASP 143 A ASP 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale13 A C SER 245 A SER 244 1_555 A N MSE 246 A MSE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C MSE 246 A MSE 245 1_555 A N PRO 247 A PRO 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale15 A C LEU 256 A LEU 255 1_555 A N MSE 257 A MSE 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 257 A MSE 256 1_555 A N PHE 258 A PHE 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 A C LYS 270 A LYS 269 1_555 A N MSE 271 A MSE 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 A C MSE 271 A MSE 270 1_555 A N LEU 272 A LEU 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 A C SER 274 A SER 273 1_555 A N MSE 275 A MSE 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale20 A C MSE 275 A MSE 274 1_555 A N VAL 276 A VAL 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 A C LEU 287 A LEU 286 1_555 A N MSE 288 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale22 A C MSE 288 A MSE 287 1_555 A N HIS 289 A HIS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale23 A C LEU 307 A LEU 306 1_555 A N MSE 308 A MSE 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 A C MSE 308 A MSE 307 1_555 A N GLN 309 A GLN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? metalc ? metalc1 A NE2 HIS 225 A HIS 224 1_555 C FE HEM . A HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2IIZ _atom_sites.fract_transf_matrix[1][1] 0.01054 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 312 4 NA NA . C 3 HEM A 1 400 400 HEM HEM . D 4 EDO A 1 401 1 EDO EDO . E 4 EDO A 1 402 2 EDO EDO . F 5 IPA A 1 403 3 IPA IPA . G 6 HOH A 1 404 5 HOH HOH . G 6 HOH A 2 405 6 HOH HOH . G 6 HOH A 3 406 7 HOH HOH . G 6 HOH A 4 407 8 HOH HOH . G 6 HOH A 5 408 9 HOH HOH . G 6 HOH A 6 409 10 HOH HOH . G 6 HOH A 7 410 11 HOH HOH . G 6 HOH A 8 411 12 HOH HOH . G 6 HOH A 9 412 13 HOH HOH . G 6 HOH A 10 413 14 HOH HOH . G 6 HOH A 11 414 15 HOH HOH . G 6 HOH A 12 415 16 HOH HOH . G 6 HOH A 13 416 17 HOH HOH . G 6 HOH A 14 417 18 HOH HOH . G 6 HOH A 15 418 19 HOH HOH . G 6 HOH A 16 419 20 HOH HOH . G 6 HOH A 17 420 21 HOH HOH . G 6 HOH A 18 421 22 HOH HOH . G 6 HOH A 19 422 23 HOH HOH . G 6 HOH A 20 423 24 HOH HOH . G 6 HOH A 21 424 25 HOH HOH . G 6 HOH A 22 425 26 HOH HOH . G 6 HOH A 23 426 27 HOH HOH . G 6 HOH A 24 427 28 HOH HOH . G 6 HOH A 25 428 29 HOH HOH . G 6 HOH A 26 429 30 HOH HOH . G 6 HOH A 27 430 31 HOH HOH . G 6 HOH A 28 431 32 HOH HOH . G 6 HOH A 29 432 33 HOH HOH . G 6 HOH A 30 433 34 HOH HOH . G 6 HOH A 31 434 35 HOH HOH . G 6 HOH A 32 435 36 HOH HOH . G 6 HOH A 33 436 37 HOH HOH . G 6 HOH A 34 437 38 HOH HOH . G 6 HOH A 35 438 39 HOH HOH . G 6 HOH A 36 439 40 HOH HOH . G 6 HOH A 37 440 41 HOH HOH . G 6 HOH A 38 441 42 HOH HOH . G 6 HOH A 39 442 43 HOH HOH . G 6 HOH A 40 443 44 HOH HOH . G 6 HOH A 41 444 45 HOH HOH . G 6 HOH A 42 445 46 HOH HOH . G 6 HOH A 43 446 47 HOH HOH . G 6 HOH A 44 447 48 HOH HOH . G 6 HOH A 45 448 49 HOH HOH . G 6 HOH A 46 449 50 HOH HOH . G 6 HOH A 47 450 51 HOH HOH . G 6 HOH A 48 451 52 HOH HOH . G 6 HOH A 49 452 53 HOH HOH . G 6 HOH A 50 453 54 HOH HOH . G 6 HOH A 51 454 55 HOH HOH . G 6 HOH A 52 455 56 HOH HOH . G 6 HOH A 53 456 57 HOH HOH . G 6 HOH A 54 457 58 HOH HOH . G 6 HOH A 55 458 59 HOH HOH . G 6 HOH A 56 459 60 HOH HOH . G 6 HOH A 57 460 61 HOH HOH . G 6 HOH A 58 461 62 HOH HOH . G 6 HOH A 59 462 63 HOH HOH . G 6 HOH A 60 463 64 HOH HOH . G 6 HOH A 61 464 65 HOH HOH . G 6 HOH A 62 465 66 HOH HOH . G 6 HOH A 63 466 67 HOH HOH . G 6 HOH A 64 467 68 HOH HOH . G 6 HOH A 65 468 69 HOH HOH . G 6 HOH A 66 469 70 HOH HOH . G 6 HOH A 67 470 71 HOH HOH . G 6 HOH A 68 471 72 HOH HOH . G 6 HOH A 69 472 73 HOH HOH . G 6 HOH A 70 473 74 HOH HOH . G 6 HOH A 71 474 75 HOH HOH . G 6 HOH A 72 475 76 HOH HOH . G 6 HOH A 73 476 77 HOH HOH . G 6 HOH A 74 477 78 HOH HOH . G 6 HOH A 75 478 79 HOH HOH . G 6 HOH A 76 479 80 HOH HOH . G 6 HOH A 77 480 81 HOH HOH . G 6 HOH A 78 481 82 HOH HOH . G 6 HOH A 79 482 83 HOH HOH . G 6 HOH A 80 483 84 HOH HOH . G 6 HOH A 81 484 85 HOH HOH . G 6 HOH A 82 485 86 HOH HOH . G 6 HOH A 83 486 87 HOH HOH . G 6 HOH A 84 487 88 HOH HOH . G 6 HOH A 85 488 89 HOH HOH . G 6 HOH A 86 489 90 HOH HOH . G 6 HOH A 87 490 91 HOH HOH . G 6 HOH A 88 491 92 HOH HOH . G 6 HOH A 89 492 93 HOH HOH . G 6 HOH A 90 493 94 HOH HOH . G 6 HOH A 91 494 95 HOH HOH . G 6 HOH A 92 495 96 HOH HOH . G 6 HOH A 93 496 97 HOH HOH . G 6 HOH A 94 497 98 HOH HOH . G 6 HOH A 95 498 99 HOH HOH . G 6 HOH A 96 499 100 HOH HOH . G 6 HOH A 97 500 101 HOH HOH . G 6 HOH A 98 501 102 HOH HOH . G 6 HOH A 99 502 103 HOH HOH . G 6 HOH A 100 503 104 HOH HOH . G 6 HOH A 101 504 105 HOH HOH . G 6 HOH A 102 505 106 HOH HOH . G 6 HOH A 103 506 107 HOH HOH . G 6 HOH A 104 507 108 HOH HOH . G 6 HOH A 105 508 109 HOH HOH . G 6 HOH A 106 509 110 HOH HOH . G 6 HOH A 107 510 111 HOH HOH . G 6 HOH A 108 511 112 HOH HOH . G 6 HOH A 109 512 113 HOH HOH . G 6 HOH A 110 513 114 HOH HOH . G 6 HOH A 111 514 115 HOH HOH . G 6 HOH A 112 515 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -29.674 -23.643 -1.609 1 45.75 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . E 4 -29.06 -22.434 -2.096 1 49.18 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . E 4 -28.593 -24.511 -0.953 1 51.59 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . E 4 -29.128 -25.536 -0.092 1 51.78 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #