data_2IJM # _model_server_result.job_id 9nV-JZS3roe4s62HITl85Q _model_server_result.datetime_utc '2024-11-24 02:16:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ijm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":690}' # _entry.id 2IJM # _exptl.entry_id 2IJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 99.81 _cell.angle_beta 103.55 _cell.angle_gamma 90.69 _cell.entry_id 2IJM _cell.length_a 45.432 _cell.length_b 51.645 _cell.length_c 66.544 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 48 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 456 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 51 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 459 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.017 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 2IJM _atom_sites.fract_transf_matrix[1][1] 0.022011 _atom_sites.fract_transf_matrix[1][2] 0.000265 _atom_sites.fract_transf_matrix[1][3] 0.005439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019364 _atom_sites.fract_transf_matrix[2][3] 0.003506 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 690 535 ATP ATP . D 3 ADP B 1 800 800 ADP ADP . E 4 HOH A 1 38 38 HOH HOH . E 4 HOH A 2 39 39 HOH HOH . E 4 HOH A 3 41 41 HOH HOH . E 4 HOH A 4 42 42 HOH HOH . E 4 HOH A 5 43 43 HOH HOH . E 4 HOH A 6 44 44 HOH HOH . E 4 HOH A 7 45 45 HOH HOH . E 4 HOH A 8 47 47 HOH HOH . E 4 HOH A 9 50 50 HOH HOH . E 4 HOH A 10 51 51 HOH HOH . E 4 HOH A 11 52 52 HOH HOH . E 4 HOH A 12 53 53 HOH HOH . E 4 HOH A 13 54 54 HOH HOH . E 4 HOH A 14 55 55 HOH HOH . E 4 HOH A 15 56 56 HOH HOH . E 4 HOH A 16 60 60 HOH HOH . E 4 HOH A 17 61 61 HOH HOH . E 4 HOH A 18 62 62 HOH HOH . E 4 HOH A 19 66 66 HOH HOH . E 4 HOH A 20 81 81 HOH HOH . E 4 HOH A 21 86 86 HOH HOH . E 4 HOH A 22 88 88 HOH HOH . E 4 HOH A 23 92 92 HOH HOH . E 4 HOH A 24 93 93 HOH HOH . E 4 HOH A 25 94 94 HOH HOH . E 4 HOH A 26 96 96 HOH HOH . E 4 HOH A 27 97 97 HOH HOH . E 4 HOH A 28 133 133 HOH HOH . E 4 HOH A 29 134 134 HOH HOH . E 4 HOH A 30 135 135 HOH HOH . E 4 HOH A 31 139 139 HOH HOH . E 4 HOH A 32 150 150 HOH HOH . E 4 HOH A 33 152 152 HOH HOH . E 4 HOH A 34 153 153 HOH HOH . E 4 HOH A 35 156 156 HOH HOH . E 4 HOH A 36 157 157 HOH HOH . E 4 HOH A 37 171 171 HOH HOH . E 4 HOH A 38 204 204 HOH HOH . E 4 HOH A 39 205 205 HOH HOH . E 4 HOH A 40 206 206 HOH HOH . E 4 HOH A 41 207 207 HOH HOH . E 4 HOH A 42 209 209 HOH HOH . E 4 HOH A 43 210 210 HOH HOH . E 4 HOH A 44 211 211 HOH HOH . E 4 HOH A 45 214 214 HOH HOH . E 4 HOH A 46 215 215 HOH HOH . E 4 HOH A 47 223 223 HOH HOH . E 4 HOH A 48 224 224 HOH HOH . E 4 HOH A 49 225 225 HOH HOH . E 4 HOH A 50 227 227 HOH HOH . E 4 HOH A 51 228 228 HOH HOH . E 4 HOH A 52 232 232 HOH HOH . E 4 HOH A 53 236 236 HOH HOH . E 4 HOH A 54 242 242 HOH HOH . E 4 HOH A 55 246 246 HOH HOH . E 4 HOH A 56 255 255 HOH HOH . E 4 HOH A 57 256 256 HOH HOH . E 4 HOH A 58 262 262 HOH HOH . E 4 HOH A 59 264 264 HOH HOH . E 4 HOH A 60 270 270 HOH HOH . E 4 HOH A 61 292 292 HOH HOH . E 4 HOH A 62 294 294 HOH HOH . E 4 HOH A 63 306 306 HOH HOH . E 4 HOH A 64 307 307 HOH HOH . E 4 HOH A 65 310 310 HOH HOH . E 4 HOH A 66 321 321 HOH HOH . E 4 HOH A 67 322 322 HOH HOH . E 4 HOH A 68 323 323 HOH HOH . E 4 HOH A 69 324 324 HOH HOH . E 4 HOH A 70 325 325 HOH HOH . E 4 HOH A 71 326 326 HOH HOH . E 4 HOH A 72 328 328 HOH HOH . E 4 HOH A 73 329 329 HOH HOH . E 4 HOH A 74 330 330 HOH HOH . E 4 HOH A 75 331 331 HOH HOH . E 4 HOH A 76 332 332 HOH HOH . E 4 HOH A 77 333 333 HOH HOH . E 4 HOH A 78 338 338 HOH HOH . E 4 HOH A 79 339 339 HOH HOH . F 4 HOH B 1 1 1 HOH HOH . F 4 HOH B 2 2 2 HOH HOH . F 4 HOH B 3 3 3 HOH HOH . F 4 HOH B 4 4 4 HOH HOH . F 4 HOH B 5 5 5 HOH HOH . F 4 HOH B 6 7 7 HOH HOH . F 4 HOH B 7 8 8 HOH HOH . F 4 HOH B 8 9 9 HOH HOH . F 4 HOH B 9 10 10 HOH HOH . F 4 HOH B 10 11 11 HOH HOH . F 4 HOH B 11 12 12 HOH HOH . F 4 HOH B 12 17 17 HOH HOH . F 4 HOH B 13 18 18 HOH HOH . F 4 HOH B 14 22 22 HOH HOH . F 4 HOH B 15 24 24 HOH HOH . F 4 HOH B 16 25 25 HOH HOH . F 4 HOH B 17 26 26 HOH HOH . F 4 HOH B 18 27 27 HOH HOH . F 4 HOH B 19 28 28 HOH HOH . F 4 HOH B 20 29 29 HOH HOH . F 4 HOH B 21 31 31 HOH HOH . F 4 HOH B 22 32 32 HOH HOH . F 4 HOH B 23 34 34 HOH HOH . F 4 HOH B 24 35 35 HOH HOH . F 4 HOH B 25 36 36 HOH HOH . F 4 HOH B 26 37 37 HOH HOH . F 4 HOH B 27 105 105 HOH HOH . F 4 HOH B 28 107 107 HOH HOH . F 4 HOH B 29 109 109 HOH HOH . F 4 HOH B 30 110 110 HOH HOH . F 4 HOH B 31 111 111 HOH HOH . F 4 HOH B 32 112 112 HOH HOH . F 4 HOH B 33 114 114 HOH HOH . F 4 HOH B 34 115 115 HOH HOH . F 4 HOH B 35 116 116 HOH HOH . F 4 HOH B 36 117 117 HOH HOH . F 4 HOH B 37 118 118 HOH HOH . F 4 HOH B 38 127 127 HOH HOH . F 4 HOH B 39 128 128 HOH HOH . F 4 HOH B 40 131 131 HOH HOH . F 4 HOH B 41 132 132 HOH HOH . F 4 HOH B 42 151 151 HOH HOH . F 4 HOH B 43 170 170 HOH HOH . F 4 HOH B 44 176 176 HOH HOH . F 4 HOH B 45 177 177 HOH HOH . F 4 HOH B 46 178 178 HOH HOH . F 4 HOH B 47 179 179 HOH HOH . F 4 HOH B 48 180 180 HOH HOH . F 4 HOH B 49 181 181 HOH HOH . F 4 HOH B 50 182 182 HOH HOH . F 4 HOH B 51 183 183 HOH HOH . F 4 HOH B 52 184 184 HOH HOH . F 4 HOH B 53 185 185 HOH HOH . F 4 HOH B 54 186 186 HOH HOH . F 4 HOH B 55 188 188 HOH HOH . F 4 HOH B 56 190 190 HOH HOH . F 4 HOH B 57 191 191 HOH HOH . F 4 HOH B 58 193 193 HOH HOH . F 4 HOH B 59 197 197 HOH HOH . F 4 HOH B 60 198 198 HOH HOH . F 4 HOH B 61 200 200 HOH HOH . F 4 HOH B 62 202 202 HOH HOH . F 4 HOH B 63 203 203 HOH HOH . F 4 HOH B 64 216 216 HOH HOH . F 4 HOH B 65 217 217 HOH HOH . F 4 HOH B 66 218 218 HOH HOH . F 4 HOH B 67 219 219 HOH HOH . F 4 HOH B 68 220 220 HOH HOH . F 4 HOH B 69 221 221 HOH HOH . F 4 HOH B 70 226 226 HOH HOH . F 4 HOH B 71 233 233 HOH HOH . F 4 HOH B 72 234 234 HOH HOH . F 4 HOH B 73 237 237 HOH HOH . F 4 HOH B 74 239 239 HOH HOH . F 4 HOH B 75 241 241 HOH HOH . F 4 HOH B 76 243 243 HOH HOH . F 4 HOH B 77 245 245 HOH HOH . F 4 HOH B 78 250 250 HOH HOH . F 4 HOH B 79 252 252 HOH HOH . F 4 HOH B 80 259 259 HOH HOH . F 4 HOH B 81 260 260 HOH HOH . F 4 HOH B 82 265 265 HOH HOH . F 4 HOH B 83 269 269 HOH HOH . F 4 HOH B 84 271 271 HOH HOH . F 4 HOH B 85 273 273 HOH HOH . F 4 HOH B 86 274 274 HOH HOH . F 4 HOH B 87 275 275 HOH HOH . F 4 HOH B 88 283 283 HOH HOH . F 4 HOH B 89 291 291 HOH HOH . F 4 HOH B 90 301 301 HOH HOH . F 4 HOH B 91 302 302 HOH HOH . F 4 HOH B 92 303 303 HOH HOH . F 4 HOH B 93 304 304 HOH HOH . F 4 HOH B 94 305 305 HOH HOH . F 4 HOH B 95 311 311 HOH HOH . F 4 HOH B 96 313 313 HOH HOH . F 4 HOH B 97 314 314 HOH HOH . F 4 HOH B 98 316 316 HOH HOH . F 4 HOH B 99 317 317 HOH HOH . F 4 HOH B 100 318 318 HOH HOH . F 4 HOH B 101 319 319 HOH HOH . F 4 HOH B 102 320 320 HOH HOH . F 4 HOH B 103 334 334 HOH HOH . F 4 HOH B 104 336 336 HOH HOH . F 4 HOH B 105 337 337 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 5.098 2.114 7.349 0.8 60.58 ? PG ATP 690 A 1 HETATM 2 O O1G ATP . . . C 2 6.193 2.623 6.437 0.8 61.11 ? O1G ATP 690 A 1 HETATM 3 O O2G ATP . . . C 2 5.346 0.715 7.886 0.8 59.5 ? O2G ATP 690 A 1 HETATM 4 O O3G ATP . . . C 2 3.7 2.395 6.828 0.8 59 ? O3G ATP 690 A 1 HETATM 5 P PB ATP . . . C 2 4.221 3.023 9.893 1 56.84 ? PB ATP 690 A 1 HETATM 6 O O1B ATP . . . C 2 3.548 1.674 9.997 1 58.74 ? O1B ATP 690 A 1 HETATM 7 O O2B ATP . . . C 2 4.977 3.58 11.059 1 57.49 ? O2B ATP 690 A 1 HETATM 8 O O3B ATP . . . C 2 5.257 3.042 8.66 1 59.06 ? O3B ATP 690 A 1 HETATM 9 P PA ATP . . . C 2 3.679 5.457 8.767 1 51.34 ? PA ATP 690 A 1 HETATM 10 O O1A ATP . . . C 2 4.82 5.922 9.636 1 52.58 ? O1A ATP 690 A 1 HETATM 11 O O2A ATP . . . C 2 3.901 5.245 7.291 1 51.74 ? O2A ATP 690 A 1 HETATM 12 O O3A ATP . . . C 2 3.129 4.097 9.404 1 54.91 ? O3A ATP 690 A 1 HETATM 13 O O5' ATP . . . C 2 2.47 6.483 8.966 1 48.34 ? O5' ATP 690 A 1 HETATM 14 C C5' ATP . . . C 2 2.132 6.948 10.263 1 42.68 ? C5' ATP 690 A 1 HETATM 15 C C4' ATP . . . C 2 0.885 7.791 10.127 1 39.39 ? C4' ATP 690 A 1 HETATM 16 O O4' ATP . . . C 2 1.267 9.113 9.757 1 36.74 ? O4' ATP 690 A 1 HETATM 17 C C3' ATP . . . C 2 -0.018 7.307 9.004 1 39.03 ? C3' ATP 690 A 1 HETATM 18 O O3' ATP . . . C 2 -1.011 6.384 9.452 1 40.87 ? O3' ATP 690 A 1 HETATM 19 C C2' ATP . . . C 2 -0.663 8.58 8.543 1 37.34 ? C2' ATP 690 A 1 HETATM 20 O O2' ATP . . . C 2 -1.723 8.824 9.471 1 36.77 ? O2' ATP 690 A 1 HETATM 21 C C1' ATP . . . C 2 0.431 9.622 8.711 1 34.71 ? C1' ATP 690 A 1 HETATM 22 N N9 ATP . . . C 2 1.255 9.76 7.475 1 32.1 ? N9 ATP 690 A 1 HETATM 23 C C8 ATP . . . C 2 2.39 9.063 7.214 1 29.58 ? C8 ATP 690 A 1 HETATM 24 N N7 ATP . . . C 2 2.92 9.415 6.024 1 27.67 ? N7 ATP 690 A 1 HETATM 25 C C5 ATP . . . C 2 2.135 10.353 5.491 1 27.54 ? C5 ATP 690 A 1 HETATM 26 C C6 ATP . . . C 2 2.137 11.145 4.246 1 27.99 ? C6 ATP 690 A 1 HETATM 27 N N6 ATP . . . C 2 3.11 10.986 3.314 1 28.87 ? N6 ATP 690 A 1 HETATM 28 N N1 ATP . . . C 2 1.135 12.032 4.068 1 28.78 ? N1 ATP 690 A 1 HETATM 29 C C2 ATP . . . C 2 0.161 12.19 4.985 1 27.44 ? C2 ATP 690 A 1 HETATM 30 N N3 ATP . . . C 2 0.106 11.502 6.128 1 27.44 ? N3 ATP 690 A 1 HETATM 31 C C4 ATP . . . C 2 1.045 10.591 6.445 1 28.58 ? C4 ATP 690 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #