data_2IJM # _model_server_result.job_id pIlMooDmznatMfc8Kq-KdQ _model_server_result.datetime_utc '2024-11-21 17:11:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ijm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":800}' # _entry.id 2IJM # _exptl.entry_id 2IJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 99.81 _cell.angle_beta 103.55 _cell.angle_gamma 90.69 _cell.entry_id 2IJM _cell.length_a 45.432 _cell.length_b 51.645 _cell.length_c 66.544 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 48 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 456 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 51 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 459 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.017 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2IJM _atom_sites.fract_transf_matrix[1][1] 0.022011 _atom_sites.fract_transf_matrix[1][2] 0.000265 _atom_sites.fract_transf_matrix[1][3] 0.005439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019364 _atom_sites.fract_transf_matrix[2][3] 0.003506 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 690 535 ATP ATP . D 3 ADP B 1 800 800 ADP ADP . E 4 HOH A 1 38 38 HOH HOH . E 4 HOH A 2 39 39 HOH HOH . E 4 HOH A 3 41 41 HOH HOH . E 4 HOH A 4 42 42 HOH HOH . E 4 HOH A 5 43 43 HOH HOH . E 4 HOH A 6 44 44 HOH HOH . E 4 HOH A 7 45 45 HOH HOH . E 4 HOH A 8 47 47 HOH HOH . E 4 HOH A 9 50 50 HOH HOH . E 4 HOH A 10 51 51 HOH HOH . E 4 HOH A 11 52 52 HOH HOH . E 4 HOH A 12 53 53 HOH HOH . E 4 HOH A 13 54 54 HOH HOH . E 4 HOH A 14 55 55 HOH HOH . E 4 HOH A 15 56 56 HOH HOH . E 4 HOH A 16 60 60 HOH HOH . E 4 HOH A 17 61 61 HOH HOH . E 4 HOH A 18 62 62 HOH HOH . E 4 HOH A 19 66 66 HOH HOH . E 4 HOH A 20 81 81 HOH HOH . E 4 HOH A 21 86 86 HOH HOH . E 4 HOH A 22 88 88 HOH HOH . E 4 HOH A 23 92 92 HOH HOH . E 4 HOH A 24 93 93 HOH HOH . E 4 HOH A 25 94 94 HOH HOH . E 4 HOH A 26 96 96 HOH HOH . E 4 HOH A 27 97 97 HOH HOH . E 4 HOH A 28 133 133 HOH HOH . E 4 HOH A 29 134 134 HOH HOH . E 4 HOH A 30 135 135 HOH HOH . E 4 HOH A 31 139 139 HOH HOH . E 4 HOH A 32 150 150 HOH HOH . E 4 HOH A 33 152 152 HOH HOH . E 4 HOH A 34 153 153 HOH HOH . E 4 HOH A 35 156 156 HOH HOH . E 4 HOH A 36 157 157 HOH HOH . E 4 HOH A 37 171 171 HOH HOH . E 4 HOH A 38 204 204 HOH HOH . E 4 HOH A 39 205 205 HOH HOH . E 4 HOH A 40 206 206 HOH HOH . E 4 HOH A 41 207 207 HOH HOH . E 4 HOH A 42 209 209 HOH HOH . E 4 HOH A 43 210 210 HOH HOH . E 4 HOH A 44 211 211 HOH HOH . E 4 HOH A 45 214 214 HOH HOH . E 4 HOH A 46 215 215 HOH HOH . E 4 HOH A 47 223 223 HOH HOH . E 4 HOH A 48 224 224 HOH HOH . E 4 HOH A 49 225 225 HOH HOH . E 4 HOH A 50 227 227 HOH HOH . E 4 HOH A 51 228 228 HOH HOH . E 4 HOH A 52 232 232 HOH HOH . E 4 HOH A 53 236 236 HOH HOH . E 4 HOH A 54 242 242 HOH HOH . E 4 HOH A 55 246 246 HOH HOH . E 4 HOH A 56 255 255 HOH HOH . E 4 HOH A 57 256 256 HOH HOH . E 4 HOH A 58 262 262 HOH HOH . E 4 HOH A 59 264 264 HOH HOH . E 4 HOH A 60 270 270 HOH HOH . E 4 HOH A 61 292 292 HOH HOH . E 4 HOH A 62 294 294 HOH HOH . E 4 HOH A 63 306 306 HOH HOH . E 4 HOH A 64 307 307 HOH HOH . E 4 HOH A 65 310 310 HOH HOH . E 4 HOH A 66 321 321 HOH HOH . E 4 HOH A 67 322 322 HOH HOH . E 4 HOH A 68 323 323 HOH HOH . E 4 HOH A 69 324 324 HOH HOH . E 4 HOH A 70 325 325 HOH HOH . E 4 HOH A 71 326 326 HOH HOH . E 4 HOH A 72 328 328 HOH HOH . E 4 HOH A 73 329 329 HOH HOH . E 4 HOH A 74 330 330 HOH HOH . E 4 HOH A 75 331 331 HOH HOH . E 4 HOH A 76 332 332 HOH HOH . E 4 HOH A 77 333 333 HOH HOH . E 4 HOH A 78 338 338 HOH HOH . E 4 HOH A 79 339 339 HOH HOH . F 4 HOH B 1 1 1 HOH HOH . F 4 HOH B 2 2 2 HOH HOH . F 4 HOH B 3 3 3 HOH HOH . F 4 HOH B 4 4 4 HOH HOH . F 4 HOH B 5 5 5 HOH HOH . F 4 HOH B 6 7 7 HOH HOH . F 4 HOH B 7 8 8 HOH HOH . F 4 HOH B 8 9 9 HOH HOH . F 4 HOH B 9 10 10 HOH HOH . F 4 HOH B 10 11 11 HOH HOH . F 4 HOH B 11 12 12 HOH HOH . F 4 HOH B 12 17 17 HOH HOH . F 4 HOH B 13 18 18 HOH HOH . F 4 HOH B 14 22 22 HOH HOH . F 4 HOH B 15 24 24 HOH HOH . F 4 HOH B 16 25 25 HOH HOH . F 4 HOH B 17 26 26 HOH HOH . F 4 HOH B 18 27 27 HOH HOH . F 4 HOH B 19 28 28 HOH HOH . F 4 HOH B 20 29 29 HOH HOH . F 4 HOH B 21 31 31 HOH HOH . F 4 HOH B 22 32 32 HOH HOH . F 4 HOH B 23 34 34 HOH HOH . F 4 HOH B 24 35 35 HOH HOH . F 4 HOH B 25 36 36 HOH HOH . F 4 HOH B 26 37 37 HOH HOH . F 4 HOH B 27 105 105 HOH HOH . F 4 HOH B 28 107 107 HOH HOH . F 4 HOH B 29 109 109 HOH HOH . F 4 HOH B 30 110 110 HOH HOH . F 4 HOH B 31 111 111 HOH HOH . F 4 HOH B 32 112 112 HOH HOH . F 4 HOH B 33 114 114 HOH HOH . F 4 HOH B 34 115 115 HOH HOH . F 4 HOH B 35 116 116 HOH HOH . F 4 HOH B 36 117 117 HOH HOH . F 4 HOH B 37 118 118 HOH HOH . F 4 HOH B 38 127 127 HOH HOH . F 4 HOH B 39 128 128 HOH HOH . F 4 HOH B 40 131 131 HOH HOH . F 4 HOH B 41 132 132 HOH HOH . F 4 HOH B 42 151 151 HOH HOH . F 4 HOH B 43 170 170 HOH HOH . F 4 HOH B 44 176 176 HOH HOH . F 4 HOH B 45 177 177 HOH HOH . F 4 HOH B 46 178 178 HOH HOH . F 4 HOH B 47 179 179 HOH HOH . F 4 HOH B 48 180 180 HOH HOH . F 4 HOH B 49 181 181 HOH HOH . F 4 HOH B 50 182 182 HOH HOH . F 4 HOH B 51 183 183 HOH HOH . F 4 HOH B 52 184 184 HOH HOH . F 4 HOH B 53 185 185 HOH HOH . F 4 HOH B 54 186 186 HOH HOH . F 4 HOH B 55 188 188 HOH HOH . F 4 HOH B 56 190 190 HOH HOH . F 4 HOH B 57 191 191 HOH HOH . F 4 HOH B 58 193 193 HOH HOH . F 4 HOH B 59 197 197 HOH HOH . F 4 HOH B 60 198 198 HOH HOH . F 4 HOH B 61 200 200 HOH HOH . F 4 HOH B 62 202 202 HOH HOH . F 4 HOH B 63 203 203 HOH HOH . F 4 HOH B 64 216 216 HOH HOH . F 4 HOH B 65 217 217 HOH HOH . F 4 HOH B 66 218 218 HOH HOH . F 4 HOH B 67 219 219 HOH HOH . F 4 HOH B 68 220 220 HOH HOH . F 4 HOH B 69 221 221 HOH HOH . F 4 HOH B 70 226 226 HOH HOH . F 4 HOH B 71 233 233 HOH HOH . F 4 HOH B 72 234 234 HOH HOH . F 4 HOH B 73 237 237 HOH HOH . F 4 HOH B 74 239 239 HOH HOH . F 4 HOH B 75 241 241 HOH HOH . F 4 HOH B 76 243 243 HOH HOH . F 4 HOH B 77 245 245 HOH HOH . F 4 HOH B 78 250 250 HOH HOH . F 4 HOH B 79 252 252 HOH HOH . F 4 HOH B 80 259 259 HOH HOH . F 4 HOH B 81 260 260 HOH HOH . F 4 HOH B 82 265 265 HOH HOH . F 4 HOH B 83 269 269 HOH HOH . F 4 HOH B 84 271 271 HOH HOH . F 4 HOH B 85 273 273 HOH HOH . F 4 HOH B 86 274 274 HOH HOH . F 4 HOH B 87 275 275 HOH HOH . F 4 HOH B 88 283 283 HOH HOH . F 4 HOH B 89 291 291 HOH HOH . F 4 HOH B 90 301 301 HOH HOH . F 4 HOH B 91 302 302 HOH HOH . F 4 HOH B 92 303 303 HOH HOH . F 4 HOH B 93 304 304 HOH HOH . F 4 HOH B 94 305 305 HOH HOH . F 4 HOH B 95 311 311 HOH HOH . F 4 HOH B 96 313 313 HOH HOH . F 4 HOH B 97 314 314 HOH HOH . F 4 HOH B 98 316 316 HOH HOH . F 4 HOH B 99 317 317 HOH HOH . F 4 HOH B 100 318 318 HOH HOH . F 4 HOH B 101 319 319 HOH HOH . F 4 HOH B 102 320 320 HOH HOH . F 4 HOH B 103 334 334 HOH HOH . F 4 HOH B 104 336 336 HOH HOH . F 4 HOH B 105 337 337 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 3 -6.41 6.92 35.814 1 45.7 ? PB ADP 800 B 1 HETATM 2 O O1B ADP . . . D 3 -6.514 5.555 36.454 1 45.8 ? O1B ADP 800 B 1 HETATM 3 O O2B ADP . . . D 3 -5.065 7.179 35.168 1 44.49 ? O2B ADP 800 B 1 HETATM 4 O O3B ADP . . . D 3 -6.958 8.023 36.68 1 42.23 ? O3B ADP 800 B 1 HETATM 5 P PA ADP . . . D 3 -7.809 8.101 33.629 1 43.55 ? PA ADP 800 B 1 HETATM 6 O O1A ADP . . . D 3 -9.106 8.7 34.108 1 44.46 ? O1A ADP 800 B 1 HETATM 7 O O2A ADP . . . D 3 -6.628 9.009 33.433 1 44.6 ? O2A ADP 800 B 1 HETATM 8 O O3A ADP . . . D 3 -7.437 6.839 34.567 1 44.79 ? O3A ADP 800 B 1 HETATM 9 O O5' ADP . . . D 3 -8.06 7.288 32.261 1 42.71 ? O5' ADP 800 B 1 HETATM 10 C C5' ADP . . . D 3 -6.974 6.831 31.457 1 39.05 ? C5' ADP 800 B 1 HETATM 11 C C4' ADP . . . D 3 -7.052 7.47 30.081 1 35.68 ? C4' ADP 800 B 1 HETATM 12 O O4' ADP . . . D 3 -8.293 7.165 29.437 1 32.7 ? O4' ADP 800 B 1 HETATM 13 C C3' ADP . . . D 3 -7.035 8.991 30.138 1 35.51 ? C3' ADP 800 B 1 HETATM 14 O O3' ADP . . . D 3 -5.723 9.544 30.331 1 38.43 ? O3' ADP 800 B 1 HETATM 15 C C2' ADP . . . D 3 -7.648 9.341 28.81 1 32.36 ? C2' ADP 800 B 1 HETATM 16 O O2' ADP . . . D 3 -6.644 9.128 27.82 1 33.06 ? O2' ADP 800 B 1 HETATM 17 C C1' ADP . . . D 3 -8.739 8.294 28.672 1 29.34 ? C1' ADP 800 B 1 HETATM 18 N N9 ADP . . . D 3 -10.022 8.794 29.251 1 27.79 ? N9 ADP 800 B 1 HETATM 19 C C8 ADP . . . D 3 -10.377 8.638 30.54 1 26.61 ? C8 ADP 800 B 1 HETATM 20 N N7 ADP . . . D 3 -11.572 9.181 30.803 1 25.02 ? N7 ADP 800 B 1 HETATM 21 C C5 ADP . . . D 3 -12.032 9.715 29.662 1 25.88 ? C5 ADP 800 B 1 HETATM 22 C C6 ADP . . . D 3 -13.256 10.445 29.259 1 26.34 ? C6 ADP 800 B 1 HETATM 23 N N6 ADP . . . D 3 -14.235 10.711 30.157 1 26.6 ? N6 ADP 800 B 1 HETATM 24 N N1 ADP . . . D 3 -13.352 10.846 27.977 1 26.36 ? N1 ADP 800 B 1 HETATM 25 C C2 ADP . . . D 3 -12.381 10.584 27.089 1 26.15 ? C2 ADP 800 B 1 HETATM 26 N N3 ADP . . . D 3 -11.249 9.929 27.389 1 25.61 ? N3 ADP 800 B 1 HETATM 27 C C4 ADP . . . D 3 -11.01 9.467 28.636 1 26.51 ? C4 ADP 800 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 1004 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #