data_2IKU
#
_model_server_result.job_id            H08Sl1rzaZWXFOIBExH3zw 
_model_server_result.datetime_utc      '2025-02-03 10:05:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2iku 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":336}' 
#
_entry.id    2IKU 
#
_exptl.entry_id    2IKU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              417.547 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-ETHYL-5-[(2S)-1-(3-METHOXYPROPYL)-2-PHENYL-1,2,3,4-TETRAHYDROQUINOLIN-7-YL]PYRIMIDINE-2,4-DIAMINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2IKU 
_cell.length_a            141.162 
_cell.length_b            141.162 
_cell.length_c            141.162 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2IKU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -70.581 0 -70.581 
3 'crystal symmetry operation' 10_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 70.581 -70.581 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 51 A CYS 46 1_555 A SG CYS 58 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf2 A SG CYS 217 A CYS 212 1_555 A SG CYS 221 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 259 A CYS 254 1_555 A SG CYS 296 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 B SG CYS 51 B CYS 46 1_555 B SG CYS 58 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf5 B SG CYS 217 B CYS 212 1_555 B SG CYS 221 B CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf6 B SG CYS 259 B CYS 254 1_555 B SG CYS 296 B CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
#
_chem_comp.formula           'C25 H31 N5 O' 
_chem_comp.formula_weight    417.547 
_chem_comp.id                LIY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-ETHYL-5-[(2S)-1-(3-METHOXYPROPYL)-2-PHENYL-1,2,3,4-TETRAHYDROQUINOLIN-7-YL]PYRIMIDINE-2,4-DIAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 LIY sing 194 n y 
N1 C2 LIY doub 195 n y 
N3 C1 LIY sing 196 n n 
N3 HN31 LIY sing 197 n n 
N3 HN32 LIY sing 198 n n 
C4 C12 LIY sing 199 n y 
C4 C1 LIY doub 200 n y 
C4 C3 LIY sing 201 n y 
C6 C3 LIY sing 202 n n 
C6 C20 LIY sing 203 n n 
C6 H61 LIY sing 204 n n 
C6 H62 LIY sing 205 n n 
C7 C8 LIY sing 206 n y 
C7 C12 LIY doub 207 n y 
C7 H7 LIY sing 208 n n 
C8 C9 LIY doub 209 n y 
C8 H8 LIY sing 210 n n 
C10 C9 LIY sing 211 n y 
C10 N5 LIY sing 212 n n 
C10 C11 LIY doub 213 n y 
C13 C14 LIY sing 214 n n 
C13 C9 LIY sing 215 n n 
C13 H131 LIY sing 216 n n 
C13 H132 LIY sing 217 n n 
C15 C21 LIY sing 218 n n 
C15 C14 LIY sing 219 n n 
C15 N5 LIY sing 220 n n 
C15 H15 LIY sing 221 n n 
C17 C16 LIY sing 222 n n 
C17 C18 LIY sing 223 n n 
C17 H171 LIY sing 224 n n 
C17 H172 LIY sing 225 n n 
C20 H201 LIY sing 226 n n 
C20 H202 LIY sing 227 n n 
C20 H203 LIY sing 228 n n 
C21 C26 LIY doub 229 n y 
C21 C22 LIY sing 230 n y 
C22 C23 LIY doub 231 n y 
C22 H22 LIY sing 232 n n 
C24 C25 LIY doub 233 n y 
C24 C23 LIY sing 234 n y 
C24 H24 LIY sing 235 n n 
C26 C25 LIY sing 236 n y 
C26 H26 LIY sing 237 n n 
C3 N2 LIY doub 238 n y 
N2 C2 LIY sing 239 n y 
C2 N4 LIY sing 240 n n 
N4 HN41 LIY sing 241 n n 
N4 HN42 LIY sing 242 n n 
C12 C11 LIY sing 243 n y 
C11 H11 LIY sing 244 n n 
C14 H141 LIY sing 245 n n 
C14 H142 LIY sing 246 n n 
C23 H23 LIY sing 247 n n 
C25 H25 LIY sing 248 n n 
N5 C16 LIY sing 249 n n 
C16 H161 LIY sing 250 n n 
C16 H162 LIY sing 251 n n 
C18 O1 LIY sing 252 n n 
C18 H181 LIY sing 253 n n 
C18 H182 LIY sing 254 n n 
O1 C19 LIY sing 255 n n 
C19 H191 LIY sing 256 n n 
C19 H192 LIY sing 257 n n 
C19 H193 LIY sing 258 n n 
#
_atom_sites.entry_id                     2IKU 
_atom_sites.fract_transf_matrix[1][1]    0.007084 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007084 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LIY A 1 336 101 LIY LIY . 
D 2 LIY B 1 336 102 LIY LIY . 
E 3 HOH A 1 337 1 HOH HOH . 
E 3 HOH A 2 338 2 HOH HOH . 
E 3 HOH A 3 339 3 HOH HOH . 
E 3 HOH A 4 340 6 HOH HOH . 
E 3 HOH A 5 341 7 HOH HOH . 
E 3 HOH A 6 342 8 HOH HOH . 
E 3 HOH A 7 343 10 HOH HOH . 
E 3 HOH A 8 344 11 HOH HOH . 
E 3 HOH A 9 345 12 HOH HOH . 
E 3 HOH A 10 346 14 HOH HOH . 
E 3 HOH A 11 347 16 HOH HOH . 
E 3 HOH A 12 348 17 HOH HOH . 
E 3 HOH A 13 349 18 HOH HOH . 
E 3 HOH A 14 350 19 HOH HOH . 
E 3 HOH A 15 351 20 HOH HOH . 
E 3 HOH A 16 352 22 HOH HOH . 
E 3 HOH A 17 353 23 HOH HOH . 
E 3 HOH A 18 354 26 HOH HOH . 
E 3 HOH A 19 355 29 HOH HOH . 
E 3 HOH A 20 356 34 HOH HOH . 
E 3 HOH A 21 357 35 HOH HOH . 
E 3 HOH A 22 358 38 HOH HOH . 
E 3 HOH A 23 359 39 HOH HOH . 
E 3 HOH A 24 360 40 HOH HOH . 
E 3 HOH A 25 361 41 HOH HOH . 
E 3 HOH A 26 362 42 HOH HOH . 
E 3 HOH A 27 363 43 HOH HOH . 
E 3 HOH A 28 364 46 HOH HOH . 
E 3 HOH A 29 365 47 HOH HOH . 
E 3 HOH A 30 366 52 HOH HOH . 
E 3 HOH A 31 367 53 HOH HOH . 
E 3 HOH A 32 368 55 HOH HOH . 
E 3 HOH A 33 369 57 HOH HOH . 
E 3 HOH A 34 370 58 HOH HOH . 
E 3 HOH A 35 371 60 HOH HOH . 
E 3 HOH A 36 372 61 HOH HOH . 
E 3 HOH A 37 373 62 HOH HOH . 
E 3 HOH A 38 374 69 HOH HOH . 
E 3 HOH A 39 375 72 HOH HOH . 
E 3 HOH A 40 376 73 HOH HOH . 
E 3 HOH A 41 377 75 HOH HOH . 
E 3 HOH A 42 378 78 HOH HOH . 
E 3 HOH A 43 379 80 HOH HOH . 
E 3 HOH A 44 380 81 HOH HOH . 
E 3 HOH A 45 381 83 HOH HOH . 
E 3 HOH A 46 382 85 HOH HOH . 
E 3 HOH A 47 383 87 HOH HOH . 
E 3 HOH A 48 384 88 HOH HOH . 
F 3 HOH B 1 337 4 HOH HOH . 
F 3 HOH B 2 338 5 HOH HOH . 
F 3 HOH B 3 339 9 HOH HOH . 
F 3 HOH B 4 340 13 HOH HOH . 
F 3 HOH B 5 341 15 HOH HOH . 
F 3 HOH B 6 342 21 HOH HOH . 
F 3 HOH B 7 343 24 HOH HOH . 
F 3 HOH B 8 344 25 HOH HOH . 
F 3 HOH B 9 345 27 HOH HOH . 
F 3 HOH B 10 346 28 HOH HOH . 
F 3 HOH B 11 347 30 HOH HOH . 
F 3 HOH B 12 348 31 HOH HOH . 
F 3 HOH B 13 349 32 HOH HOH . 
F 3 HOH B 14 350 33 HOH HOH . 
F 3 HOH B 15 351 36 HOH HOH . 
F 3 HOH B 16 352 37 HOH HOH . 
F 3 HOH B 17 353 44 HOH HOH . 
F 3 HOH B 18 354 45 HOH HOH . 
F 3 HOH B 19 355 48 HOH HOH . 
F 3 HOH B 20 356 49 HOH HOH . 
F 3 HOH B 21 357 51 HOH HOH . 
F 3 HOH B 22 358 54 HOH HOH . 
F 3 HOH B 23 359 56 HOH HOH . 
F 3 HOH B 24 360 59 HOH HOH . 
F 3 HOH B 25 361 63 HOH HOH . 
F 3 HOH B 26 362 64 HOH HOH . 
F 3 HOH B 27 363 65 HOH HOH . 
F 3 HOH B 28 364 66 HOH HOH . 
F 3 HOH B 29 365 67 HOH HOH . 
F 3 HOH B 30 366 68 HOH HOH . 
F 3 HOH B 31 367 71 HOH HOH . 
F 3 HOH B 32 368 76 HOH HOH . 
F 3 HOH B 33 369 77 HOH HOH . 
F 3 HOH B 34 370 79 HOH HOH . 
F 3 HOH B 35 371 82 HOH HOH . 
F 3 HOH B 36 372 84 HOH HOH . 
F 3 HOH B 37 373 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LIY . . . C 2 -9.652 28.012 -34.267 1 32.71 ? N1 LIY 336 A 1 
HETATM 2 N N3 LIY . . . C 2 -10.785 27.776 -36.288 1 32.12 ? N3 LIY 336 A 1 
HETATM 3 C C4 LIY . . . C 2 -11.613 26.6 -34.287 1 32.41 ? C4 LIY 336 A 1 
HETATM 4 C C6 LIY . . . C 2 -12.243 25.426 -32.024 1 32.09 ? C6 LIY 336 A 1 
HETATM 5 C C7 LIY . . . C 2 -14.019 26.227 -35.035 1 32.68 ? C7 LIY 336 A 1 
HETATM 6 C C8 LIY . . . C 2 -14.892 25.452 -35.803 1 32.37 ? C8 LIY 336 A 1 
HETATM 7 C C10 LIY . . . C 2 -13.011 24.052 -36.559 1 32.92 ? C10 LIY 336 A 1 
HETATM 8 C C13 LIY . . . C 2 -15.371 23.566 -37.394 1 32.69 ? C13 LIY 336 A 1 
HETATM 9 C C15 LIY . . . C 2 -13.367 22.239 -38.296 1 34.46 ? C15 LIY 336 A 1 
HETATM 10 C C17 LIY . . . C 2 -10.767 21.874 -35.985 1 36.1 ? C17 LIY 336 A 1 
HETATM 11 C C20 LIY . . . C 2 -11.867 23.988 -32.315 1 31.49 ? C20 LIY 336 A 1 
HETATM 12 C C21 LIY . . . C 2 -13.399 22.823 -39.663 1 35.49 ? C21 LIY 336 A 1 
HETATM 13 C C22 LIY . . . C 2 -13.815 21.995 -40.715 1 35.52 ? C22 LIY 336 A 1 
HETATM 14 C C24 LIY . . . C 2 -13.515 23.793 -42.284 1 35.31 ? C24 LIY 336 A 1 
HETATM 15 C C26 LIY . . . C 2 -13.048 24.149 -39.934 1 35.76 ? C26 LIY 336 A 1 
HETATM 16 C C1 LIY . . . C 2 -10.662 27.48 -34.98 1 32.49 ? C1 LIY 336 A 1 
HETATM 17 C C3 LIY . . . C 2 -11.368 26.338 -32.85 1 31.95 ? C3 LIY 336 A 1 
HETATM 18 N N2 LIY . . . C 2 -10.332 26.949 -32.264 1 32.06 ? N2 LIY 336 A 1 
HETATM 19 C C2 LIY . . . C 2 -9.485 27.744 -32.957 1 32.34 ? C2 LIY 336 A 1 
HETATM 20 N N4 LIY . . . C 2 -8.448 28.33 -32.321 1 32.84 ? N4 LIY 336 A 1 
HETATM 21 C C12 LIY . . . C 2 -12.68 25.925 -35.046 1 32.18 ? C12 LIY 336 A 1 
HETATM 22 C C11 LIY . . . C 2 -12.189 24.856 -35.789 1 32.65 ? C11 LIY 336 A 1 
HETATM 23 C C9 LIY . . . C 2 -14.435 24.379 -36.555 1 31.78 ? C9 LIY 336 A 1 
HETATM 24 C C14 LIY . . . C 2 -14.783 22.206 -37.737 1 33.79 ? C14 LIY 336 A 1 
HETATM 25 C C23 LIY . . . C 2 -13.869 22.475 -42.016 1 34.94 ? C23 LIY 336 A 1 
HETATM 26 C C25 LIY . . . C 2 -13.103 24.625 -41.25 1 35.89 ? C25 LIY 336 A 1 
HETATM 27 N N5 LIY . . . C 2 -12.53 22.978 -37.343 1 34.57 ? N5 LIY 336 A 1 
HETATM 28 C C16 LIY . . . C 2 -11.123 22.514 -37.332 1 36.33 ? C16 LIY 336 A 1 
HETATM 29 C C18 LIY . . . C 2 -9.257 21.693 -35.862 1 36.67 ? C18 LIY 336 A 1 
HETATM 30 O O1 LIY . . . C 2 -8.857 20.923 -34.717 1 37.7 ? O1 LIY 336 A 1 
HETATM 31 C C19 LIY . . . C 2 -7.424 20.823 -34.595 1 37.27 ? C19 LIY 336 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#