data_2IL2 # _model_server_result.job_id VYhGIEb-5rxl-3CSwBJLzg _model_server_result.datetime_utc '2025-08-02 19:01:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2il2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2IL2 # _exptl.entry_id 2IL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2IL2 _cell.length_a 141.533 _cell.length_b 141.533 _cell.length_c 141.533 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 46 1_555 A SG CYS 58 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 217 A CYS 212 1_555 A SG CYS 221 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 259 A CYS 254 1_555 A SG CYS 296 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 51 B CYS 46 1_555 B SG CYS 58 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 B SG CYS 217 B CYS 212 1_555 B SG CYS 221 B CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 B SG CYS 259 B CYS 254 1_555 B SG CYS 296 B CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 2IL2 _atom_sites.fract_transf_matrix[1][1] 0.007065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LIX A 1 401 401 LIX LIX . D 3 CIT A 1 501 501 CIT CIT . E 2 LIX B 1 402 402 LIX LIX . F 4 HOH A 1 502 1 HOH HOH . F 4 HOH A 2 503 2 HOH HOH . F 4 HOH A 3 504 3 HOH HOH . F 4 HOH A 4 505 4 HOH HOH . F 4 HOH A 5 506 5 HOH HOH . F 4 HOH A 6 507 7 HOH HOH . F 4 HOH A 7 508 11 HOH HOH . F 4 HOH A 8 509 13 HOH HOH . F 4 HOH A 9 510 15 HOH HOH . F 4 HOH A 10 511 17 HOH HOH . F 4 HOH A 11 512 21 HOH HOH . F 4 HOH A 12 513 22 HOH HOH . F 4 HOH A 13 514 23 HOH HOH . F 4 HOH A 14 515 24 HOH HOH . F 4 HOH A 15 516 25 HOH HOH . F 4 HOH A 16 517 26 HOH HOH . F 4 HOH A 17 518 27 HOH HOH . F 4 HOH A 18 519 28 HOH HOH . F 4 HOH A 19 520 30 HOH HOH . F 4 HOH A 20 521 31 HOH HOH . F 4 HOH A 21 522 33 HOH HOH . F 4 HOH A 22 523 34 HOH HOH . F 4 HOH A 23 524 39 HOH HOH . F 4 HOH A 24 525 41 HOH HOH . F 4 HOH A 25 526 42 HOH HOH . F 4 HOH A 26 527 44 HOH HOH . F 4 HOH A 27 528 46 HOH HOH . F 4 HOH A 28 529 47 HOH HOH . F 4 HOH A 29 530 48 HOH HOH . F 4 HOH A 30 531 49 HOH HOH . F 4 HOH A 31 532 51 HOH HOH . F 4 HOH A 32 533 52 HOH HOH . F 4 HOH A 33 534 55 HOH HOH . F 4 HOH A 34 535 58 HOH HOH . F 4 HOH A 35 536 59 HOH HOH . F 4 HOH A 36 537 60 HOH HOH . F 4 HOH A 37 538 61 HOH HOH . F 4 HOH A 38 539 62 HOH HOH . F 4 HOH A 39 540 63 HOH HOH . F 4 HOH A 40 541 64 HOH HOH . F 4 HOH A 41 542 67 HOH HOH . F 4 HOH A 42 543 69 HOH HOH . F 4 HOH A 43 544 70 HOH HOH . F 4 HOH A 44 545 72 HOH HOH . F 4 HOH A 45 546 74 HOH HOH . F 4 HOH A 46 547 75 HOH HOH . F 4 HOH A 47 548 78 HOH HOH . F 4 HOH A 48 549 79 HOH HOH . F 4 HOH A 49 550 82 HOH HOH . F 4 HOH A 50 551 83 HOH HOH . F 4 HOH A 51 552 85 HOH HOH . F 4 HOH A 52 553 86 HOH HOH . F 4 HOH A 53 554 87 HOH HOH . F 4 HOH A 54 555 88 HOH HOH . F 4 HOH A 55 556 89 HOH HOH . F 4 HOH A 56 557 91 HOH HOH . F 4 HOH A 57 558 92 HOH HOH . F 4 HOH A 58 559 93 HOH HOH . F 4 HOH A 59 560 95 HOH HOH . F 4 HOH A 60 561 98 HOH HOH . F 4 HOH A 61 562 106 HOH HOH . F 4 HOH A 62 563 107 HOH HOH . F 4 HOH A 63 564 108 HOH HOH . F 4 HOH A 64 565 109 HOH HOH . F 4 HOH A 65 566 113 HOH HOH . F 4 HOH A 66 567 114 HOH HOH . F 4 HOH A 67 568 115 HOH HOH . F 4 HOH A 68 569 116 HOH HOH . F 4 HOH A 69 570 120 HOH HOH . F 4 HOH A 70 571 121 HOH HOH . F 4 HOH A 71 572 122 HOH HOH . F 4 HOH A 72 573 124 HOH HOH . F 4 HOH A 73 574 126 HOH HOH . F 4 HOH A 74 575 127 HOH HOH . F 4 HOH A 75 576 130 HOH HOH . F 4 HOH A 76 577 132 HOH HOH . F 4 HOH A 77 578 135 HOH HOH . F 4 HOH A 78 579 136 HOH HOH . F 4 HOH A 79 580 137 HOH HOH . F 4 HOH A 80 581 140 HOH HOH . F 4 HOH A 81 582 145 HOH HOH . F 4 HOH A 82 583 150 HOH HOH . F 4 HOH A 83 584 153 HOH HOH . F 4 HOH A 84 585 154 HOH HOH . F 4 HOH A 85 586 161 HOH HOH . F 4 HOH A 86 587 165 HOH HOH . F 4 HOH A 87 588 166 HOH HOH . F 4 HOH A 88 589 167 HOH HOH . F 4 HOH A 89 590 168 HOH HOH . F 4 HOH A 90 591 172 HOH HOH . F 4 HOH A 91 592 173 HOH HOH . F 4 HOH A 92 593 176 HOH HOH . F 4 HOH A 93 594 177 HOH HOH . F 4 HOH A 94 595 180 HOH HOH . F 4 HOH A 95 596 185 HOH HOH . F 4 HOH A 96 597 190 HOH HOH . F 4 HOH A 97 598 192 HOH HOH . F 4 HOH A 98 599 194 HOH HOH . F 4 HOH A 99 600 197 HOH HOH . F 4 HOH A 100 601 198 HOH HOH . F 4 HOH A 101 602 202 HOH HOH . F 4 HOH A 102 603 206 HOH HOH . F 4 HOH A 103 604 209 HOH HOH . F 4 HOH A 104 605 212 HOH HOH . F 4 HOH A 105 606 213 HOH HOH . F 4 HOH A 106 607 216 HOH HOH . F 4 HOH A 107 608 218 HOH HOH . F 4 HOH A 108 609 219 HOH HOH . F 4 HOH A 109 610 220 HOH HOH . F 4 HOH A 110 611 222 HOH HOH . F 4 HOH A 111 612 227 HOH HOH . F 4 HOH A 112 613 233 HOH HOH . F 4 HOH A 113 614 234 HOH HOH . F 4 HOH A 114 615 238 HOH HOH . F 4 HOH A 115 616 240 HOH HOH . F 4 HOH A 116 617 242 HOH HOH . F 4 HOH A 117 618 246 HOH HOH . F 4 HOH A 118 619 247 HOH HOH . F 4 HOH A 119 620 253 HOH HOH . F 4 HOH A 120 621 256 HOH HOH . F 4 HOH A 121 622 257 HOH HOH . F 4 HOH A 122 623 262 HOH HOH . F 4 HOH A 123 624 267 HOH HOH . F 4 HOH A 124 625 268 HOH HOH . F 4 HOH A 125 626 272 HOH HOH . F 4 HOH A 126 627 275 HOH HOH . F 4 HOH A 127 628 276 HOH HOH . F 4 HOH A 128 629 278 HOH HOH . F 4 HOH A 129 630 279 HOH HOH . F 4 HOH A 130 631 282 HOH HOH . F 4 HOH A 131 632 283 HOH HOH . F 4 HOH A 132 633 289 HOH HOH . F 4 HOH A 133 634 295 HOH HOH . F 4 HOH A 134 635 301 HOH HOH . F 4 HOH A 135 636 305 HOH HOH . F 4 HOH A 136 637 312 HOH HOH . F 4 HOH A 137 638 320 HOH HOH . F 4 HOH A 138 639 325 HOH HOH . F 4 HOH A 139 640 328 HOH HOH . F 4 HOH A 140 641 331 HOH HOH . G 4 HOH B 1 403 6 HOH HOH . G 4 HOH B 2 404 8 HOH HOH . G 4 HOH B 3 405 9 HOH HOH . G 4 HOH B 4 406 10 HOH HOH . G 4 HOH B 5 407 12 HOH HOH . G 4 HOH B 6 408 14 HOH HOH . G 4 HOH B 7 409 16 HOH HOH . G 4 HOH B 8 410 18 HOH HOH . G 4 HOH B 9 411 20 HOH HOH . G 4 HOH B 10 412 36 HOH HOH . G 4 HOH B 11 413 37 HOH HOH . G 4 HOH B 12 414 40 HOH HOH . G 4 HOH B 13 415 50 HOH HOH . G 4 HOH B 14 416 54 HOH HOH . G 4 HOH B 15 417 56 HOH HOH . G 4 HOH B 16 418 65 HOH HOH . G 4 HOH B 17 419 66 HOH HOH . G 4 HOH B 18 420 68 HOH HOH . G 4 HOH B 19 421 71 HOH HOH . G 4 HOH B 20 422 73 HOH HOH . G 4 HOH B 21 423 84 HOH HOH . G 4 HOH B 22 424 90 HOH HOH . G 4 HOH B 23 425 94 HOH HOH . G 4 HOH B 24 426 96 HOH HOH . G 4 HOH B 25 427 97 HOH HOH . G 4 HOH B 26 428 100 HOH HOH . G 4 HOH B 27 429 102 HOH HOH . G 4 HOH B 28 430 103 HOH HOH . G 4 HOH B 29 431 104 HOH HOH . G 4 HOH B 30 432 110 HOH HOH . G 4 HOH B 31 433 111 HOH HOH . G 4 HOH B 32 434 112 HOH HOH . G 4 HOH B 33 435 117 HOH HOH . G 4 HOH B 34 436 123 HOH HOH . G 4 HOH B 35 437 125 HOH HOH . G 4 HOH B 36 438 128 HOH HOH . G 4 HOH B 37 439 129 HOH HOH . G 4 HOH B 38 440 131 HOH HOH . G 4 HOH B 39 441 133 HOH HOH . G 4 HOH B 40 442 134 HOH HOH . G 4 HOH B 41 443 139 HOH HOH . G 4 HOH B 42 444 141 HOH HOH . G 4 HOH B 43 445 142 HOH HOH . G 4 HOH B 44 446 143 HOH HOH . G 4 HOH B 45 447 146 HOH HOH . G 4 HOH B 46 448 148 HOH HOH . G 4 HOH B 47 449 152 HOH HOH . G 4 HOH B 48 450 155 HOH HOH . G 4 HOH B 49 451 156 HOH HOH . G 4 HOH B 50 452 158 HOH HOH . G 4 HOH B 51 453 159 HOH HOH . G 4 HOH B 52 454 160 HOH HOH . G 4 HOH B 53 455 169 HOH HOH . G 4 HOH B 54 456 171 HOH HOH . G 4 HOH B 55 457 179 HOH HOH . G 4 HOH B 56 458 181 HOH HOH . G 4 HOH B 57 459 182 HOH HOH . G 4 HOH B 58 460 183 HOH HOH . G 4 HOH B 59 461 186 HOH HOH . G 4 HOH B 60 462 193 HOH HOH . G 4 HOH B 61 463 195 HOH HOH . G 4 HOH B 62 464 200 HOH HOH . G 4 HOH B 63 465 203 HOH HOH . G 4 HOH B 64 466 205 HOH HOH . G 4 HOH B 65 467 207 HOH HOH . G 4 HOH B 66 468 208 HOH HOH . G 4 HOH B 67 469 214 HOH HOH . G 4 HOH B 68 470 217 HOH HOH . G 4 HOH B 69 471 221 HOH HOH . G 4 HOH B 70 472 226 HOH HOH . G 4 HOH B 71 473 229 HOH HOH . G 4 HOH B 72 474 232 HOH HOH . G 4 HOH B 73 475 235 HOH HOH . G 4 HOH B 74 476 244 HOH HOH . G 4 HOH B 75 477 250 HOH HOH . G 4 HOH B 76 478 252 HOH HOH . G 4 HOH B 77 479 254 HOH HOH . G 4 HOH B 78 480 255 HOH HOH . G 4 HOH B 79 481 259 HOH HOH . G 4 HOH B 80 482 260 HOH HOH . G 4 HOH B 81 483 263 HOH HOH . G 4 HOH B 82 484 273 HOH HOH . G 4 HOH B 83 485 284 HOH HOH . G 4 HOH B 84 486 285 HOH HOH . G 4 HOH B 85 487 287 HOH HOH . G 4 HOH B 86 488 288 HOH HOH . G 4 HOH B 87 489 290 HOH HOH . G 4 HOH B 88 490 292 HOH HOH . G 4 HOH B 89 491 294 HOH HOH . G 4 HOH B 90 492 296 HOH HOH . G 4 HOH B 91 493 297 HOH HOH . G 4 HOH B 92 494 298 HOH HOH . G 4 HOH B 93 495 299 HOH HOH . G 4 HOH B 94 496 304 HOH HOH . G 4 HOH B 95 497 311 HOH HOH . G 4 HOH B 96 498 313 HOH HOH . G 4 HOH B 97 499 314 HOH HOH . G 4 HOH B 98 500 315 HOH HOH . G 4 HOH B 99 501 326 HOH HOH . G 4 HOH B 100 502 327 HOH HOH . G 4 HOH B 101 503 329 HOH HOH . G 4 HOH B 102 504 330 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 3 -20.452 -8.929 -9.764 1 80.56 ? C1 CIT 501 A 1 HETATM 2 O O1 CIT . . . D 3 -20.939 -7.868 -10.218 1 80.14 ? O1 CIT 501 A 1 HETATM 3 O O2 CIT . . . D 3 -19.385 -8.867 -9.107 1 79.48 ? O2 CIT 501 A 1 HETATM 4 C C2 CIT . . . D 3 -21.159 -10.256 -9.997 1 80.81 ? C2 CIT 501 A 1 HETATM 5 C C3 CIT . . . D 3 -21.075 -10.761 -11.451 1 80.76 ? C3 CIT 501 A 1 HETATM 6 O O7 CIT . . . D 3 -21.202 -9.627 -12.346 1 80.73 ? O7 CIT 501 A 1 HETATM 7 C C4 CIT . . . D 3 -22.256 -11.703 -11.758 1 81.47 ? C4 CIT 501 A 1 HETATM 8 C C5 CIT . . . D 3 -22.278 -12.314 -13.153 1 81.13 ? C5 CIT 501 A 1 HETATM 9 O O3 CIT . . . D 3 -21.937 -11.662 -14.159 1 79.83 ? O3 CIT 501 A 1 HETATM 10 O O4 CIT . . . D 3 -22.655 -13.499 -13.314 1 81.67 ? O4 CIT 501 A 1 HETATM 11 C C6 CIT . . . D 3 -19.736 -11.485 -11.635 1 80.61 ? C6 CIT 501 A 1 HETATM 12 O O5 CIT . . . D 3 -18.734 -11.204 -10.927 1 80.75 ? O5 CIT 501 A 1 HETATM 13 O O6 CIT . . . D 3 -19.607 -12.387 -12.495 1 80 ? O6 CIT 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #