data_2IL5 # _model_server_result.job_id nfFN-KW1L7hvNhmGHtu_KQ _model_server_result.datetime_utc '2025-08-07 06:38:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2il5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 2IL5 # _exptl.entry_id 2IL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2IL5 _cell.length_a 107.588 _cell.length_b 107.588 _cell.length_c 39.105 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2IL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 43 A PHE 40 1_555 A N MSE 44 A MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C MSE 44 A MSE 41 1_555 A N THR 45 A THR 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C VAL 85 A VAL 82 1_555 A N MSE 86 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 86 A MSE 83 1_555 A N ASP 87 A ASP 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 A C LYS 91 A LYS 88 1_555 A N MSE 92 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 92 A MSE 89 1_555 A N THR 93 A THR 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C GLY 95 A GLY 92 1_555 A N MSE 96 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 A C MSE 96 A MSE 93 1_555 A N PRO 97 A PRO 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale9 A C GLN 119 A GLN 116 1_555 A N MSE 120 A MSE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 120 A MSE 117 1_555 A N LEU 121 A LEU 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale11 A C ALA 149 A ALA 146 1_555 A N MSE 150 A MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 A C MSE 150 A MSE 147 1_555 A N VAL 151 A VAL 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 A C LEU 156 A LEU 153 1_555 A N MSE 157 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 A C MSE 157 A MSE 154 1_555 A N PHE 158 A PHE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 A C LYS 160 A LYS 157 1_555 A N MSE 161 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale16 A C MSE 161 A MSE 158 1_555 A N TYR 162 A TYR 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2IL5 _atom_sites.fract_transf_matrix[1][1] 0.009295 _atom_sites.fract_transf_matrix[1][2] 0.005366 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 201 NA NA . C 3 HOH A 1 202 1 HOH HOH . C 3 HOH A 2 203 2 HOH HOH . C 3 HOH A 3 204 3 HOH HOH . C 3 HOH A 4 205 4 HOH HOH . C 3 HOH A 5 206 5 HOH HOH . C 3 HOH A 6 207 6 HOH HOH . C 3 HOH A 7 208 7 HOH HOH . C 3 HOH A 8 209 8 HOH HOH . C 3 HOH A 9 210 9 HOH HOH . C 3 HOH A 10 211 10 HOH HOH . C 3 HOH A 11 212 11 HOH HOH . C 3 HOH A 12 213 12 HOH HOH . C 3 HOH A 13 214 13 HOH HOH . C 3 HOH A 14 215 14 HOH HOH . C 3 HOH A 15 216 15 HOH HOH . C 3 HOH A 16 217 16 HOH HOH . C 3 HOH A 17 218 17 HOH HOH . C 3 HOH A 18 219 18 HOH HOH . C 3 HOH A 19 220 19 HOH HOH . C 3 HOH A 20 221 20 HOH HOH . C 3 HOH A 21 222 21 HOH HOH . C 3 HOH A 22 223 22 HOH HOH . C 3 HOH A 23 224 23 HOH HOH . C 3 HOH A 24 225 24 HOH HOH . C 3 HOH A 25 226 25 HOH HOH . C 3 HOH A 26 227 26 HOH HOH . C 3 HOH A 27 228 27 HOH HOH . C 3 HOH A 28 229 28 HOH HOH . C 3 HOH A 29 230 29 HOH HOH . C 3 HOH A 30 231 30 HOH HOH . C 3 HOH A 31 232 31 HOH HOH . C 3 HOH A 32 233 32 HOH HOH . C 3 HOH A 33 234 33 HOH HOH . C 3 HOH A 34 235 34 HOH HOH . C 3 HOH A 35 236 35 HOH HOH . C 3 HOH A 36 237 37 HOH HOH . C 3 HOH A 37 238 38 HOH HOH . C 3 HOH A 38 239 39 HOH HOH . C 3 HOH A 39 240 40 HOH HOH . C 3 HOH A 40 241 41 HOH HOH . C 3 HOH A 41 242 42 HOH HOH . C 3 HOH A 42 243 43 HOH HOH . C 3 HOH A 43 244 44 HOH HOH . C 3 HOH A 44 245 45 HOH HOH . C 3 HOH A 45 246 46 HOH HOH . C 3 HOH A 46 247 47 HOH HOH . C 3 HOH A 47 248 48 HOH HOH . C 3 HOH A 48 249 49 HOH HOH . C 3 HOH A 49 250 50 HOH HOH . C 3 HOH A 50 251 51 HOH HOH . C 3 HOH A 51 252 52 HOH HOH . C 3 HOH A 52 253 53 HOH HOH . C 3 HOH A 53 254 54 HOH HOH . C 3 HOH A 54 255 55 HOH HOH . C 3 HOH A 55 256 56 HOH HOH . C 3 HOH A 56 257 57 HOH HOH . C 3 HOH A 57 258 58 HOH HOH . C 3 HOH A 58 259 59 HOH HOH . C 3 HOH A 59 260 60 HOH HOH . C 3 HOH A 60 261 61 HOH HOH . C 3 HOH A 61 262 62 HOH HOH . C 3 HOH A 62 263 63 HOH HOH . C 3 HOH A 63 264 64 HOH HOH . C 3 HOH A 64 265 65 HOH HOH . C 3 HOH A 65 266 66 HOH HOH . C 3 HOH A 66 267 67 HOH HOH . C 3 HOH A 67 268 68 HOH HOH . C 3 HOH A 68 269 69 HOH HOH . C 3 HOH A 69 270 71 HOH HOH . C 3 HOH A 70 271 72 HOH HOH . C 3 HOH A 71 272 73 HOH HOH . C 3 HOH A 72 273 74 HOH HOH . C 3 HOH A 73 274 75 HOH HOH . C 3 HOH A 74 275 76 HOH HOH . C 3 HOH A 75 276 77 HOH HOH . C 3 HOH A 76 277 78 HOH HOH . C 3 HOH A 77 278 79 HOH HOH . C 3 HOH A 78 279 80 HOH HOH . C 3 HOH A 79 280 81 HOH HOH . C 3 HOH A 80 281 82 HOH HOH . C 3 HOH A 81 282 83 HOH HOH . C 3 HOH A 82 283 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.026 _atom_site.Cartn_y 44.28 _atom_site.Cartn_z 5.743 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #