data_2ILT # _model_server_result.job_id w5XWFgWl7F4kPFBr-UWrZA _model_server_result.datetime_utc '2024-11-07 11:19:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ilt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 2ILT # _exptl.entry_id 2ILT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ILT _cell.length_a 123.871 _cell.length_b 123.871 _cell.length_c 123.871 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ILT _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,2,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 123.871 0 123.871 3 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 123.871 123.871 0 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 123.871 123.871 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 123.871 123.871 7 'crystal symmetry operation' 7_665 -z+1,-x+1,y 0 0 -1 -1 0 0 0 1 0 123.871 123.871 0 8 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 123.871 0 123.871 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_656 -y+1,z,-x+1 0 -1 0 0 0 1 -1 0 0 123.871 0 123.871 11 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 123.871 123.871 12 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 123.871 123.871 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 2 A HIS 12 1_555 C NI NI . A NI 802 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.507 ? metalc ? metalc2 A NE2 HIS 2 A HIS 12 6_566 C NI NI . A NI 802 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 A NE2 HIS 2 A HIS 12 12_665 C NI NI . A NI 802 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.507 ? metalc ? metalc4 A NE2 HIS 4 A HIS 14 1_555 C NI NI . A NI 802 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.326 ? metalc ? metalc5 A NE2 HIS 4 A HIS 14 6_566 C NI NI . A NI 802 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.328 ? metalc ? metalc6 A NE2 HIS 4 A HIS 14 12_665 C NI NI . A NI 802 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 A NE2 HIS 8 A HIS 18 1_555 B NI NI . A NI 801 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.399 ? metalc ? metalc8 A NE2 HIS 8 A HIS 18 6_566 B NI NI . A NI 801 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.396 ? metalc ? metalc9 A NE2 HIS 8 A HIS 18 12_665 B NI NI . A NI 801 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.396 ? metalc ? metalc10 A NE2 HIS 10 A HIS 20 1_555 B NI NI . A NI 801 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 A NE2 HIS 10 A HIS 20 12_665 B NI NI . A NI 801 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.283 ? metalc ? metalc12 A NE2 HIS 10 A HIS 20 6_566 B NI NI . A NI 801 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.28 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ILT _atom_sites.fract_transf_matrix[1][1] 0.008073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 801 801 NI NI . C 2 NI A 1 802 802 NI NI . D 3 NAP A 1 901 901 NAP NAP . E 4 NN1 A 1 902 201 NN1 NN1 . F 5 HOH A 1 903 1 HOH HOH . F 5 HOH A 2 904 2 HOH HOH . F 5 HOH A 3 905 5 HOH HOH . F 5 HOH A 4 906 6 HOH HOH . F 5 HOH A 5 907 7 HOH HOH . F 5 HOH A 6 908 8 HOH HOH . F 5 HOH A 7 909 9 HOH HOH . F 5 HOH A 8 910 10 HOH HOH . F 5 HOH A 9 911 12 HOH HOH . F 5 HOH A 10 912 14 HOH HOH . F 5 HOH A 11 913 15 HOH HOH . F 5 HOH A 12 914 16 HOH HOH . F 5 HOH A 13 915 17 HOH HOH . F 5 HOH A 14 916 18 HOH HOH . F 5 HOH A 15 917 19 HOH HOH . F 5 HOH A 16 918 20 HOH HOH . F 5 HOH A 17 919 21 HOH HOH . F 5 HOH A 18 920 22 HOH HOH . F 5 HOH A 19 921 24 HOH HOH . F 5 HOH A 20 922 25 HOH HOH . F 5 HOH A 21 923 26 HOH HOH . F 5 HOH A 22 924 28 HOH HOH . F 5 HOH A 23 925 29 HOH HOH . F 5 HOH A 24 926 31 HOH HOH . F 5 HOH A 25 927 32 HOH HOH . F 5 HOH A 26 928 35 HOH HOH . F 5 HOH A 27 929 37 HOH HOH . F 5 HOH A 28 930 38 HOH HOH . F 5 HOH A 29 931 39 HOH HOH . F 5 HOH A 30 932 41 HOH HOH . F 5 HOH A 31 933 42 HOH HOH . F 5 HOH A 32 934 43 HOH HOH . F 5 HOH A 33 935 44 HOH HOH . F 5 HOH A 34 936 45 HOH HOH . F 5 HOH A 35 937 46 HOH HOH . F 5 HOH A 36 938 47 HOH HOH . F 5 HOH A 37 939 48 HOH HOH . F 5 HOH A 38 940 49 HOH HOH . F 5 HOH A 39 941 51 HOH HOH . F 5 HOH A 40 942 52 HOH HOH . F 5 HOH A 41 943 53 HOH HOH . F 5 HOH A 42 944 54 HOH HOH . F 5 HOH A 43 945 55 HOH HOH . F 5 HOH A 44 946 56 HOH HOH . F 5 HOH A 45 947 57 HOH HOH . F 5 HOH A 46 948 58 HOH HOH . F 5 HOH A 47 949 59 HOH HOH . F 5 HOH A 48 950 60 HOH HOH . F 5 HOH A 49 951 61 HOH HOH . F 5 HOH A 50 952 62 HOH HOH . F 5 HOH A 51 953 63 HOH HOH . F 5 HOH A 52 954 64 HOH HOH . F 5 HOH A 53 955 65 HOH HOH . F 5 HOH A 54 956 66 HOH HOH . F 5 HOH A 55 957 67 HOH HOH . F 5 HOH A 56 958 68 HOH HOH . F 5 HOH A 57 959 69 HOH HOH . F 5 HOH A 58 960 70 HOH HOH . F 5 HOH A 59 961 71 HOH HOH . F 5 HOH A 60 962 72 HOH HOH . F 5 HOH A 61 963 73 HOH HOH . F 5 HOH A 62 964 75 HOH HOH . F 5 HOH A 63 965 76 HOH HOH . F 5 HOH A 64 966 77 HOH HOH . F 5 HOH A 65 967 78 HOH HOH . F 5 HOH A 66 968 79 HOH HOH . F 5 HOH A 67 969 80 HOH HOH . F 5 HOH A 68 970 81 HOH HOH . F 5 HOH A 69 971 82 HOH HOH . F 5 HOH A 70 972 83 HOH HOH . F 5 HOH A 71 973 84 HOH HOH . F 5 HOH A 72 974 85 HOH HOH . F 5 HOH A 73 975 86 HOH HOH . F 5 HOH A 74 976 87 HOH HOH . F 5 HOH A 75 977 88 HOH HOH . F 5 HOH A 76 978 90 HOH HOH . F 5 HOH A 77 979 91 HOH HOH . F 5 HOH A 78 980 92 HOH HOH . F 5 HOH A 79 981 93 HOH HOH . F 5 HOH A 80 982 94 HOH HOH . F 5 HOH A 81 983 95 HOH HOH . F 5 HOH A 82 984 96 HOH HOH . F 5 HOH A 83 985 97 HOH HOH . F 5 HOH A 84 986 98 HOH HOH . F 5 HOH A 85 987 99 HOH HOH . F 5 HOH A 86 988 100 HOH HOH . F 5 HOH A 87 989 101 HOH HOH . F 5 HOH A 88 990 102 HOH HOH . F 5 HOH A 89 991 103 HOH HOH . F 5 HOH A 90 992 105 HOH HOH . F 5 HOH A 91 993 106 HOH HOH . F 5 HOH A 92 994 107 HOH HOH . F 5 HOH A 93 995 108 HOH HOH . F 5 HOH A 94 996 109 HOH HOH . F 5 HOH A 95 997 110 HOH HOH . F 5 HOH A 96 998 113 HOH HOH . F 5 HOH A 97 999 114 HOH HOH . F 5 HOH A 98 1000 115 HOH HOH . F 5 HOH A 99 1001 116 HOH HOH . F 5 HOH A 100 1002 117 HOH HOH . F 5 HOH A 101 1003 118 HOH HOH . F 5 HOH A 102 1004 119 HOH HOH . F 5 HOH A 103 1005 120 HOH HOH . F 5 HOH A 104 1006 121 HOH HOH . F 5 HOH A 105 1007 122 HOH HOH . F 5 HOH A 106 1008 123 HOH HOH . F 5 HOH A 107 1009 124 HOH HOH . F 5 HOH A 108 1010 125 HOH HOH . F 5 HOH A 109 1011 126 HOH HOH . F 5 HOH A 110 1012 127 HOH HOH . F 5 HOH A 111 1013 128 HOH HOH . F 5 HOH A 112 1014 129 HOH HOH . F 5 HOH A 113 1015 130 HOH HOH . F 5 HOH A 114 1016 131 HOH HOH . F 5 HOH A 115 1017 132 HOH HOH . F 5 HOH A 116 1018 133 HOH HOH . F 5 HOH A 117 1019 134 HOH HOH . F 5 HOH A 118 1020 135 HOH HOH . F 5 HOH A 119 1021 136 HOH HOH . F 5 HOH A 120 1022 137 HOH HOH . F 5 HOH A 121 1023 138 HOH HOH . F 5 HOH A 122 1024 139 HOH HOH . F 5 HOH A 123 1025 140 HOH HOH . F 5 HOH A 124 1026 141 HOH HOH . F 5 HOH A 125 1027 142 HOH HOH . F 5 HOH A 126 1028 144 HOH HOH . F 5 HOH A 127 1029 145 HOH HOH . F 5 HOH A 128 1030 146 HOH HOH . F 5 HOH A 129 1031 147 HOH HOH . F 5 HOH A 130 1032 148 HOH HOH . F 5 HOH A 131 1033 149 HOH HOH . F 5 HOH A 132 1034 150 HOH HOH . F 5 HOH A 133 1035 152 HOH HOH . F 5 HOH A 134 1036 153 HOH HOH . F 5 HOH A 135 1037 154 HOH HOH . F 5 HOH A 136 1038 155 HOH HOH . F 5 HOH A 137 1039 156 HOH HOH . F 5 HOH A 138 1040 157 HOH HOH . F 5 HOH A 139 1041 158 HOH HOH . F 5 HOH A 140 1042 159 HOH HOH . F 5 HOH A 141 1043 160 HOH HOH . F 5 HOH A 142 1044 162 HOH HOH . F 5 HOH A 143 1045 163 HOH HOH . F 5 HOH A 144 1046 164 HOH HOH . F 5 HOH A 145 1047 165 HOH HOH . F 5 HOH A 146 1048 166 HOH HOH . F 5 HOH A 147 1049 167 HOH HOH . F 5 HOH A 148 1050 168 HOH HOH . F 5 HOH A 149 1051 169 HOH HOH . F 5 HOH A 150 1052 170 HOH HOH . F 5 HOH A 151 1053 171 HOH HOH . F 5 HOH A 152 1054 172 HOH HOH . F 5 HOH A 153 1055 173 HOH HOH . F 5 HOH A 154 1056 174 HOH HOH . F 5 HOH A 155 1057 175 HOH HOH . F 5 HOH A 156 1058 177 HOH HOH . F 5 HOH A 157 1059 178 HOH HOH . F 5 HOH A 158 1060 181 HOH HOH . F 5 HOH A 159 1061 182 HOH HOH . F 5 HOH A 160 1062 183 HOH HOH . F 5 HOH A 161 1063 184 HOH HOH . F 5 HOH A 162 1064 185 HOH HOH . F 5 HOH A 163 1065 186 HOH HOH . F 5 HOH A 164 1066 187 HOH HOH . F 5 HOH A 165 1067 188 HOH HOH . F 5 HOH A 166 1068 189 HOH HOH . F 5 HOH A 167 1069 191 HOH HOH . F 5 HOH A 168 1070 192 HOH HOH . F 5 HOH A 169 1071 193 HOH HOH . F 5 HOH A 170 1072 194 HOH HOH . F 5 HOH A 171 1073 195 HOH HOH . F 5 HOH A 172 1074 196 HOH HOH . F 5 HOH A 173 1075 197 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id A _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 39.733 _atom_site.Cartn_y 84.14 _atom_site.Cartn_z 39.734 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 30.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 801 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #