data_2ILU # _model_server_result.job_id Y8oaGDoJA9gwEW8QT7uguw _model_server_result.datetime_utc '2024-11-25 18:11:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ilu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":482}' # _entry.id 2ILU # _exptl.entry_id 2ILU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ILU _cell.length_a 143.566 _cell.length_b 143.566 _cell.length_c 108.763 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ILU _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.783 124.331803 0 3 'crystal symmetry operation' 7_556 y,x,-z+4/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 145.017333 4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+4/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 71.783 124.331803 145.017333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 248 A VAL 248 1_555 A N OCS 249 A OCS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C OCS 249 A OCS 249 1_555 A N LEU 250 A LEU 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 2ILU _atom_sites.fract_transf_matrix[1][1] 0.006965 _atom_sites.fract_transf_matrix[1][2] 0.004021 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 480 1 SO4 SO4 . C 2 SO4 A 1 481 2 SO4 SO4 . D 3 NDP A 1 482 1 NDP NDP . E 4 HOH A 1 483 1 HOH WAT . E 4 HOH A 2 484 2 HOH WAT . E 4 HOH A 3 485 3 HOH WAT . E 4 HOH A 4 486 4 HOH WAT . E 4 HOH A 5 487 5 HOH WAT . E 4 HOH A 6 488 6 HOH WAT . E 4 HOH A 7 489 7 HOH WAT . E 4 HOH A 8 490 8 HOH WAT . E 4 HOH A 9 491 9 HOH WAT . E 4 HOH A 10 492 10 HOH WAT . E 4 HOH A 11 493 11 HOH WAT . E 4 HOH A 12 494 12 HOH WAT . E 4 HOH A 13 495 13 HOH WAT . E 4 HOH A 14 496 14 HOH WAT . E 4 HOH A 15 497 15 HOH WAT . E 4 HOH A 16 498 16 HOH WAT . E 4 HOH A 17 499 17 HOH WAT . E 4 HOH A 18 500 18 HOH WAT . E 4 HOH A 19 501 19 HOH WAT . E 4 HOH A 20 502 20 HOH WAT . E 4 HOH A 21 503 21 HOH WAT . E 4 HOH A 22 504 22 HOH WAT . E 4 HOH A 23 505 23 HOH WAT . E 4 HOH A 24 506 24 HOH WAT . E 4 HOH A 25 507 25 HOH WAT . E 4 HOH A 26 508 26 HOH WAT . E 4 HOH A 27 509 27 HOH WAT . E 4 HOH A 28 510 28 HOH WAT . E 4 HOH A 29 511 29 HOH WAT . E 4 HOH A 30 512 30 HOH WAT . E 4 HOH A 31 513 31 HOH WAT . E 4 HOH A 32 514 32 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 3 32.414 27.845 62.905 1 35.06 ? PA NDP 482 A 1 HETATM 2 O O1A NDP . . . D 3 31.096 28.514 62.872 1 38.79 ? O1A NDP 482 A 1 HETATM 3 O O2A NDP . . . D 3 32.488 26.404 62.62 1 37.73 ? O2A NDP 482 A 1 HETATM 4 O O5B NDP . . . D 3 32.99 28.195 64.315 1 33.88 ? O5B NDP 482 A 1 HETATM 5 C C5B NDP . . . D 3 34.309 27.75 64.656 1 26.42 ? C5B NDP 482 A 1 HETATM 6 C C4B NDP . . . D 3 34.567 28.103 66.116 1 23.51 ? C4B NDP 482 A 1 HETATM 7 O O4B NDP . . . D 3 33.215 28.166 66.748 1 23.41 ? O4B NDP 482 A 1 HETATM 8 C C3B NDP . . . D 3 35.253 26.949 66.767 1 23.4 ? C3B NDP 482 A 1 HETATM 9 O O3B NDP . . . D 3 35.915 27.37 67.967 1 22.29 ? O3B NDP 482 A 1 HETATM 10 C C2B NDP . . . D 3 34.082 26.06 67.01 1 24.09 ? C2B NDP 482 A 1 HETATM 11 O O2B NDP . . . D 3 34.341 24.859 67.673 1 28.51 ? O2B NDP 482 A 1 HETATM 12 C C1B NDP . . . D 3 33.124 27.029 67.661 1 22.21 ? C1B NDP 482 A 1 HETATM 13 N N9A NDP . . . D 3 31.736 26.56 67.676 1 20.86 ? N9A NDP 482 A 1 HETATM 14 C C8A NDP . . . D 3 31.115 25.794 66.701 1 18.89 ? C8A NDP 482 A 1 HETATM 15 N N7A NDP . . . D 3 29.877 25.432 67.019 1 17.37 ? N7A NDP 482 A 1 HETATM 16 C C5A NDP . . . D 3 29.682 25.983 68.24 1 19.9 ? C5A NDP 482 A 1 HETATM 17 C C6A NDP . . . D 3 28.55 25.96 69.111 1 19.42 ? C6A NDP 482 A 1 HETATM 18 N N6A NDP . . . D 3 27.422 25.323 68.816 1 20.05 ? N6A NDP 482 A 1 HETATM 19 N N1A NDP . . . D 3 28.688 26.638 70.296 1 17.97 ? N1A NDP 482 A 1 HETATM 20 C C2A NDP . . . D 3 29.819 27.297 70.629 1 17.54 ? C2A NDP 482 A 1 HETATM 21 N N3A NDP . . . D 3 30.953 27.379 69.867 1 18.41 ? N3A NDP 482 A 1 HETATM 22 C C4A NDP . . . D 3 30.828 26.698 68.663 1 19.94 ? C4A NDP 482 A 1 HETATM 23 O O3 NDP . . . D 3 33.428 28.643 61.935 1 45.25 ? O3 NDP 482 A 1 HETATM 24 P PN NDP . . . D 3 34.721 28.325 61.07 1 51.13 ? PN NDP 482 A 1 HETATM 25 O O1N NDP . . . D 3 35.532 27.297 61.771 1 51.18 ? O1N NDP 482 A 1 HETATM 26 O O2N NDP . . . D 3 35.358 29.654 60.83 1 52.45 ? O2N NDP 482 A 1 HETATM 27 O O5D NDP . . . D 3 34.218 27.796 59.628 1 56.34 ? O5D NDP 482 A 1 HETATM 28 C C5D NDP . . . D 3 33.237 26.734 59.467 1 65.47 ? C5D NDP 482 A 1 HETATM 29 C C4D NDP . . . D 3 33.908 25.394 59.29 1 71.33 ? C4D NDP 482 A 1 HETATM 30 O O4D NDP . . . D 3 33.572 24.493 60.395 1 74.7 ? O4D NDP 482 A 1 HETATM 31 C C3D NDP . . . D 3 33.533 24.597 58.028 1 73.54 ? C3D NDP 482 A 1 HETATM 32 O O3D NDP . . . D 3 34.118 25.075 56.846 1 73.18 ? O3D NDP 482 A 1 HETATM 33 C C2D NDP . . . D 3 33.907 23.177 58.434 1 75.25 ? C2D NDP 482 A 1 HETATM 34 O O2D NDP . . . D 3 35.287 22.956 58.14 1 75.46 ? O2D NDP 482 A 1 HETATM 35 C C1D NDP . . . D 3 33.578 23.146 59.936 1 76.98 ? C1D NDP 482 A 1 HETATM 36 N N1N NDP . . . D 3 32.252 22.474 60.264 1 80.12 ? N1N NDP 482 A 1 HETATM 37 C C2N NDP . . . D 3 32.251 21.11 60.513 1 81.72 ? C2N NDP 482 A 1 HETATM 38 C C3N NDP . . . D 3 31.081 20.409 60.821 1 83.14 ? C3N NDP 482 A 1 HETATM 39 C C7N NDP . . . D 3 31.073 18.903 61.096 1 83.08 ? C7N NDP 482 A 1 HETATM 40 O O7N NDP . . . D 3 31.654 18.142 60.317 1 82.57 ? O7N NDP 482 A 1 HETATM 41 N N7N NDP . . . D 3 30.422 18.499 62.203 1 82.17 ? N7N NDP 482 A 1 HETATM 42 C C4N NDP . . . D 3 29.827 21.138 60.88 1 82.71 ? C4N NDP 482 A 1 HETATM 43 C C5N NDP . . . D 3 29.83 22.532 60.626 1 81.68 ? C5N NDP 482 A 1 HETATM 44 C C6N NDP . . . D 3 31.01 23.203 60.322 1 81.47 ? C6N NDP 482 A 1 HETATM 45 P P2B NDP . . . D 3 34.99 23.618 66.85 1 29.33 ? P2B NDP 482 A 1 HETATM 46 O O1X NDP . . . D 3 36.364 24.037 66.432 1 27.9 ? O1X NDP 482 A 1 HETATM 47 O O2X NDP . . . D 3 34.927 22.506 67.859 1 33.8 ? O2X NDP 482 A 1 HETATM 48 O O3X NDP . . . D 3 34.07 23.378 65.678 1 31.78 ? O3X NDP 482 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 499 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #